Cdca2 (cell division cycle associated 2) - Rat Genome Database

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Gene: Cdca2 (cell division cycle associated 2) Rattus norvegicus
Analyze
Symbol: Cdca2
Name: cell division cycle associated 2
RGD ID: 1311003
Description: Predicted to enable protein phosphatase regulator activity. Predicted to be involved in regulation of mitotic nuclear division. Predicted to act upstream of or within chromosome segregation. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in chromosome and nucleus. Orthologous to human CDCA2 (cell division cycle associated 2); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cell division cycle-associated protein 2; LOC305984
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81546,071,360 - 46,117,524 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1546,071,360 - 46,116,639 (-)EnsemblGRCr8
mRatBN7.21541,895,946 - 41,942,226 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1541,895,901 - 41,941,611 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1543,760,646 - 43,806,313 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01544,910,867 - 44,956,534 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01543,356,180 - 43,401,847 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01544,365,396 - 44,411,601 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1544,365,405 - 44,411,004 (-)Ensemblrn6Rnor6.0
Rnor_5.01547,185,590 - 47,231,348 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41547,225,711 - 47,271,412 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1541,559,981 - 41,605,879 (-)NCBICelera
RGSC_v3.11547,241,861 - 47,287,342 (-)NCBI
Cytogenetic Map15p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-palmitoylglycerol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
azathioprine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
DDT  (EXP)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
diazinon  (EXP)
dibutyl phthalate  (ISO)
dieldrin  (EXP)
diethyl maleate  (EXP)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
geldanamycin  (ISO)
glycidol  (EXP)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
indometacin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
lucanthone  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dichloride  (ISO)
methimazole  (EXP)
miconazole  (ISO)
motexafin gadolinium  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nickel dichloride  (EXP)
niclosamide  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pinosylvin  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
streptozocin  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene 2,4-diisocyanate  (ISO)
topotecan  (EXP)
trans-pinosylvin  (ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zinc acetate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IBA,IEA,ISO)
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22801782  


Genomics

Comparative Map Data
Cdca2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81546,071,360 - 46,117,524 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1546,071,360 - 46,116,639 (-)EnsemblGRCr8
mRatBN7.21541,895,946 - 41,942,226 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1541,895,901 - 41,941,611 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1543,760,646 - 43,806,313 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01544,910,867 - 44,956,534 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01543,356,180 - 43,401,847 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01544,365,396 - 44,411,601 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1544,365,405 - 44,411,004 (-)Ensemblrn6Rnor6.0
Rnor_5.01547,185,590 - 47,231,348 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41547,225,711 - 47,271,412 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1541,559,981 - 41,605,879 (-)NCBICelera
RGSC_v3.11547,241,861 - 47,287,342 (-)NCBI
Cytogenetic Map15p12NCBI
CDCA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38825,458,931 - 25,507,917 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl825,459,199 - 25,507,911 (+)Ensemblhg38GRCh38
GRCh37825,316,447 - 25,365,433 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36825,372,428 - 25,421,342 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34825,372,429 - 25,421,342NCBI
Celera824,278,060 - 24,326,920 (+)NCBICelera
Cytogenetic Map8p21.2NCBI
HuRef823,861,484 - 23,910,346 (+)NCBIHuRef
CHM1_1825,517,979 - 25,566,826 (+)NCBICHM1_1
T2T-CHM13v2.0825,734,151 - 25,783,086 (+)NCBIT2T-CHM13v2.0
Cdca2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391467,910,629 - 67,953,290 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1467,913,780 - 67,953,290 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381467,673,180 - 67,715,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1467,676,331 - 67,715,841 (-)Ensemblmm10GRCm38
MGSCv371468,294,411 - 68,333,898 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361466,629,951 - 66,660,755 (-)NCBIMGSCv36mm8
Celera1465,433,981 - 65,473,487 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.66NCBI
Cdca2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540348,375,287 - 48,419,955 (+)Ensembl
ChiLan1.0NW_00495540348,374,276 - 48,417,130 (+)NCBIChiLan1.0ChiLan1.0
CDCA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2743,998,888 - 44,049,042 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1819,713,275 - 19,763,433 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0824,739,705 - 24,788,898 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1821,648,782 - 21,697,584 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl821,650,086 - 21,697,584 (+)EnsemblpanPan2panpan1.1
CDCA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12531,943,649 - 31,997,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2531,947,094 - 31,996,022 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2532,528,674 - 32,582,189 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02532,142,593 - 32,196,409 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2532,145,921 - 32,195,032 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12532,098,317 - 32,152,106 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02531,947,903 - 32,001,606 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02532,113,782 - 32,166,984 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cdca2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049439,940,250 - 9,997,577 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367571,195,567 - 1,248,237 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367571,195,604 - 1,249,367 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDCA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl149,518,201 - 9,566,588 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1149,517,763 - 9,571,303 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21410,682,849 - 10,731,706 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDCA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1823,582,062 - 23,631,590 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl823,582,744 - 23,632,045 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605218,535,616 - 18,584,889 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdca2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475820,491,118 - 20,538,653 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475820,490,902 - 20,537,171 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdca2
44 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:84
Count of miRNA genes:63
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000031163
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
2306968Anxrr23Anxiety related response QTL 234.83reflex trait (VT:0001961)amplitude of the acoustic startle response (CMO:0001520)154063126846187442Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
7411725Strs7Sensitivity to stroke QTL 73.8cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)154028990149308583Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 160 91 90 59 86 59 6 348 185 11 139 80 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC087063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000031163   ⟹   ENSRNOP00000038312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1546,071,360 - 46,116,639 (-)Ensembl
mRatBN7.2 Ensembl1541,895,901 - 41,941,243 (-)Ensembl
Rnor_6.0 Ensembl1544,365,405 - 44,411,004 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102698   ⟹   ENSRNOP00000079797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1541,896,338 - 41,941,611 (-)Ensembl
RefSeq Acc Id: NM_001107273   ⟹   NP_001100743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,071,360 - 46,117,026 (-)NCBI
mRatBN7.21541,895,960 - 41,941,630 (-)NCBI
Rnor_6.01544,365,405 - 44,411,004 (-)NCBI
Rnor_5.01547,185,590 - 47,231,348 (+)NCBI
RGSC_v3.41547,225,711 - 47,271,412 (-)RGD
Celera1541,559,981 - 41,605,879 (-)RGD
Sequence:
RefSeq Acc Id: XM_006252117   ⟹   XP_006252179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,071,737 - 46,117,068 (-)NCBI
mRatBN7.21541,895,946 - 41,941,837 (-)NCBI
Rnor_6.01544,365,396 - 44,411,074 (-)NCBI
Rnor_5.01547,185,590 - 47,231,348 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252118   ⟹   XP_006252180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,071,737 - 46,117,112 (-)NCBI
mRatBN7.21541,895,946 - 41,941,837 (-)NCBI
Rnor_6.01544,365,396 - 44,411,302 (-)NCBI
Rnor_5.01547,185,590 - 47,231,348 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252120   ⟹   XP_006252182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,071,737 - 46,117,068 (-)NCBI
mRatBN7.21541,895,946 - 41,941,838 (-)NCBI
Rnor_6.01544,365,396 - 44,411,074 (-)NCBI
Rnor_5.01547,185,590 - 47,231,348 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770757   ⟹   XP_008768979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,071,737 - 46,109,544 (-)NCBI
mRatBN7.21541,895,946 - 41,934,147 (-)NCBI
Rnor_6.01544,365,396 - 44,404,014 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599696   ⟹   XP_017455185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,071,737 - 46,117,524 (-)NCBI
mRatBN7.21541,895,946 - 41,942,226 (-)NCBI
Rnor_6.01544,365,447 - 44,411,601 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063274292   ⟹   XP_063130362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,071,737 - 46,117,518 (-)NCBI
RefSeq Acc Id: XM_063274293   ⟹   XP_063130363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,071,737 - 46,109,475 (-)NCBI
RefSeq Acc Id: NP_001100743   ⟸   NM_001107273
- Sequence:
RefSeq Acc Id: XP_006252182   ⟸   XM_006252120
- Peptide Label: isoform X2
- UniProtKB: A6K6P9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252180   ⟸   XM_006252118
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006252179   ⟸   XM_006252117
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008768979   ⟸   XM_008770757
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017455185   ⟸   XM_017599696
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000038312   ⟸   ENSRNOT00000031163
Ensembl Acc Id: ENSRNOP00000079797   ⟸   ENSRNOT00000102698
RefSeq Acc Id: XP_063130362   ⟸   XM_063274292
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063130363   ⟸   XM_063274293
- Peptide Label: isoform X3
Protein Domains
PP1-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ADI8-F1-model_v2 AlphaFold D4ADI8 1-981 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699763
Promoter ID:EPDNEW_R10286
Type:initiation region
Name:Cdca2_1
Description:cell division cycle associated 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01544,410,981 - 44,411,041EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311003 AgrOrtholog
BioCyc Gene G2FUF-13304 BioCyc
Ensembl Genes ENSRNOG00000025302 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031163.5 UniProtKB/TrEMBL
  ENSRNOT00000102698.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7131691 IMAGE-MGC_LOAD
InterPro PP1-bd UniProtKB/TrEMBL
KEGG Report rno:305984 UniProtKB/TrEMBL
MGC_CLONE MGC:94256 IMAGE-MGC_LOAD
NCBI Gene 305984 ENTREZGENE
PANTHER ANTIGEN KI-67-LIKE PROTEIN UniProtKB/TrEMBL
  PTHR21603:SF16 UniProtKB/TrEMBL
Pfam PP1_bind UniProtKB/TrEMBL
PhenoGen Cdca2 PhenoGen
RatGTEx ENSRNOG00000025302 RatGTEx
UniProt A0A8I5ZNC7 ENTREZGENE, UniProtKB/TrEMBL
  A6K6P9 ENTREZGENE, UniProtKB/TrEMBL
  D4ADI8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Cdca2  cell division cycle associated 2  Cdca2_predicted  cell division cycle associated 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cdca2_predicted  cell division cycle associated 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED