Zfat (zinc finger and AT hook domain containing) - Rat Genome Database

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Gene: Zfat (zinc finger and AT hook domain containing) Rattus norvegicus
Analyze
Symbol: Zfat
Name: zinc finger and AT hook domain containing
RGD ID: 1310886
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within several processes, including DNA-templated transcription elongation; hematopoietic progenitor cell differentiation; and spongiotrophoblast layer development. Human ortholog(s) of this gene implicated in autoimmune thyroiditis. Orthologous to human ZFAT (zinc finger and AT-hook domain containing); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362925; ZFAT zinc finger 1; Zfat1; Zfp406; zinc finger protein 406; zinc finger protein ZFAT
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2799,886,954 - 100,054,288 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl799,886,954 - 100,054,274 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7101,651,871 - 101,826,734 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07103,853,558 - 104,028,415 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07103,772,860 - 103,947,722 (-)NCBIRnor_WKY
Rnor_6.07109,037,777 - 109,207,511 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7109,037,845 - 109,205,354 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07108,980,615 - 109,149,677 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47105,570,121 - 105,736,965 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17105,604,960 - 105,771,196 (-)NCBI
Celera796,398,419 - 96,565,690 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20660741  


Genomics

Comparative Map Data
Zfat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2799,886,954 - 100,054,288 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl799,886,954 - 100,054,274 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7101,651,871 - 101,826,734 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07103,853,558 - 104,028,415 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07103,772,860 - 103,947,722 (-)NCBIRnor_WKY
Rnor_6.07109,037,777 - 109,207,511 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7109,037,845 - 109,205,354 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07108,980,615 - 109,149,677 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47105,570,121 - 105,736,965 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17105,604,960 - 105,771,196 (-)NCBI
Celera796,398,419 - 96,565,690 (-)NCBICelera
Cytogenetic Map7q34NCBI
ZFAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388134,477,788 - 134,832,339 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl8134,477,788 - 134,713,049 (-)EnsemblGRCh38hg38GRCh38
GRCh378135,490,031 - 135,725,274 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368135,559,213 - 135,794,463 (-)NCBINCBI36Build 36hg18NCBI36
Build 348135,559,212 - 135,794,463NCBI
Celera8131,694,988 - 131,897,996 (-)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8130,805,939 - 131,040,970 (-)NCBIHuRef
CHM1_18135,532,148 - 135,767,381 (-)NCBICHM1_1
T2T-CHM13v2.08135,595,711 - 135,830,869 (-)NCBIT2T-CHM13v2.0
Zfat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391567,955,563 - 68,130,771 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1567,955,613 - 68,130,705 (-)EnsemblGRCm39 Ensembl
GRCm381568,083,714 - 68,258,922 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1568,083,764 - 68,258,856 (-)EnsemblGRCm38mm10GRCm38
MGSCv371567,915,300 - 68,090,418 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361567,913,435 - 68,088,516 (-)NCBIMGSCv36mm8
Celera1569,599,468 - 69,776,200 (-)NCBICelera
Cytogenetic Map15D2NCBI
Zfat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554618,862,686 - 9,137,182 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554618,863,200 - 9,152,307 (-)NCBIChiLan1.0ChiLan1.0
ZFAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18134,102,879 - 134,337,255 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8134,102,879 - 134,337,255 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08131,148,934 - 131,383,113 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ZFAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11330,649,971 - 30,842,941 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1330,650,654 - 30,841,543 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1330,628,405 - 30,818,191 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01331,015,917 - 31,208,692 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1331,015,920 - 31,208,860 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11330,738,470 - 30,928,309 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01330,838,493 - 31,027,240 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01331,187,246 - 31,377,513 (-)NCBIUU_Cfam_GSD_1.0
Zfat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053037,551,227 - 7,724,930 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647014,977,496 - 15,151,041 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493647014,974,493 - 15,151,029 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl47,016,774 - 7,174,985 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.146,969,692 - 7,174,989 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.246,821,635 - 6,852,447 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18128,882,903 - 129,115,594 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8128,882,905 - 129,115,454 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603910,976,877 - 11,210,561 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Zfat
934 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:74
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000068291
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
10450828Scl79Serum cholesterol level QTL 793.50.001blood HDL cholesterol amount (VT:0000184)blood low density lipoprotein cholesterol level (CMO:0000053)789867376101773158Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)793595647106839474Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)799736187103146217Rat

Markers in Region
D7Rat137  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27100,005,580 - 100,005,753 (+)MAPPERmRatBN7.2
Rnor_6.07109,156,622 - 109,156,794NCBIRnor6.0
Rnor_5.07109,099,451 - 109,099,623UniSTSRnor5.0
RGSC_v3.47105,688,746 - 105,688,919RGDRGSC3.4
RGSC_v3.47105,688,747 - 105,688,919UniSTSRGSC3.4
RGSC_v3.17105,722,673 - 105,723,165RGD
Celera796,517,061 - 96,517,233UniSTS
SHRSP x BN Map757.9199UniSTS
SHRSP x BN Map757.9199RGD
Cytogenetic Map7q34UniSTS
D7Got85  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27100,006,584 - 100,006,727 (+)MAPPERmRatBN7.2
Rnor_6.07109,157,626 - 109,157,768NCBIRnor6.0
Rnor_5.07109,100,455 - 109,100,597UniSTSRnor5.0
RGSC_v3.47105,689,751 - 105,689,893RGDRGSC3.4
RGSC_v3.47105,689,751 - 105,689,893UniSTSRGSC3.4
RGSC_v3.17105,723,981 - 105,724,123RGD
Celera796,518,065 - 96,518,207UniSTS
RH 3.4 Map7688.0RGD
RH 3.4 Map7688.0UniSTS
RH 2.0 Map7527.5RGD
Cytogenetic Map7q34UniSTS
D7Got79  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2799,929,570 - 99,929,753 (+)MAPPERmRatBN7.2
Rnor_6.07109,080,407 - 109,080,589NCBIRnor6.0
Rnor_5.07109,023,236 - 109,023,418UniSTSRnor5.0
RGSC_v3.47105,612,738 - 105,612,920RGDRGSC3.4
RGSC_v3.47105,612,739 - 105,612,921UniSTSRGSC3.4
RGSC_v3.17105,646,968 - 105,647,150RGD
Celera796,441,023 - 96,441,209UniSTS
RH 3.4 Map7686.69UniSTS
RH 3.4 Map7686.69RGD
Cytogenetic Map7q34UniSTS
BE110410  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2799,887,502 - 99,887,675 (+)MAPPERmRatBN7.2
Rnor_6.07109,038,337 - 109,038,509NCBIRnor6.0
Rnor_5.07108,981,166 - 108,981,338UniSTSRnor5.0
RGSC_v3.47105,570,670 - 105,570,842UniSTSRGSC3.4
Celera796,398,968 - 96,399,140UniSTS
RH 3.4 Map7687.1UniSTS
Cytogenetic Map7q34UniSTS
RH135231  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2799,887,054 - 99,887,249 (+)MAPPERmRatBN7.2
Rnor_6.07109,037,889 - 109,038,083NCBIRnor6.0
Rnor_5.07108,980,718 - 108,980,912UniSTSRnor5.0
RGSC_v3.47105,570,222 - 105,570,416UniSTSRGSC3.4
Celera796,398,520 - 96,398,714UniSTS
RH 3.4 Map7687.1UniSTS
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 1 12 9
Low 3 39 56 41 7 41 8 11 74 35 32 11 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000068291   ⟹   ENSRNOP00000059224
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl799,886,954 - 100,054,274 (-)Ensembl
Rnor_6.0 Ensembl7109,037,845 - 109,205,354 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093145   ⟹   ENSRNOP00000076243
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7109,038,400 - 109,205,194 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093363
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl799,978,550 - 100,020,882 (-)Ensembl
Rnor_6.0 Ensembl7109,129,914 - 109,159,979 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093541
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7109,137,874 - 109,160,089 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094312   ⟹   ENSRNOP00000092217
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl799,986,136 - 100,054,148 (-)Ensembl
RefSeq Acc Id: NM_001134957   ⟹   NP_001128429
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2799,886,954 - 100,054,274 (-)NCBI
Rnor_6.07109,037,788 - 109,205,369 (-)NCBI
Rnor_5.07108,980,615 - 109,149,677 (-)NCBI
RGSC_v3.47105,570,121 - 105,736,965 (-)RGD
Celera796,398,419 - 96,565,690 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241713   ⟹   XP_006241775
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2799,886,954 - 100,054,288 (-)NCBI
Rnor_6.07109,037,777 - 109,207,511 (-)NCBI
Rnor_5.07108,980,615 - 109,149,677 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594960   ⟹   XP_017450449
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2799,886,954 - 100,054,288 (-)NCBI
Rnor_6.07109,037,777 - 109,207,511 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594961   ⟹   XP_017450450
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2799,886,954 - 100,053,993 (-)NCBI
Rnor_6.07109,037,777 - 109,205,129 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079527   ⟹   XP_038935455
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2799,921,086 - 100,054,288 (-)NCBI
RefSeq Acc Id: XM_039079528   ⟹   XP_038935456
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2799,920,949 - 100,054,288 (-)NCBI
RefSeq Acc Id: XM_039079529   ⟹   XP_038935457
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2799,921,086 - 100,054,288 (-)NCBI
RefSeq Acc Id: XR_005486668
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2799,912,193 - 100,054,288 (-)NCBI
RefSeq Acc Id: XR_005486669
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2799,912,193 - 100,054,288 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001128429   ⟸   NM_001134957
- UniProtKB: D4A2U0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241775   ⟸   XM_006241713
- Peptide Label: isoform X1
- UniProtKB: A0A1W2Q6E1 (UniProtKB/TrEMBL),   D4A2U0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450449   ⟸   XM_017594960
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017450450   ⟸   XM_017594961
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000076243   ⟸   ENSRNOT00000093145
RefSeq Acc Id: ENSRNOP00000059224   ⟸   ENSRNOT00000068291
RefSeq Acc Id: XP_038935456   ⟸   XM_039079528
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038935457   ⟸   XM_039079529
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038935455   ⟸   XM_039079527
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000092217   ⟸   ENSRNOT00000094312
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1W2Q6E1-F1-model_v2 AlphaFold A0A1W2Q6E1 1-1235 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695368
Promoter ID:EPDNEW_R5893
Type:single initiation site
Name:Zfat_1
Description:zinc finger and AT hook domain containing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07109,205,363 - 109,205,423EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310886 AgrOrtholog
BioCyc Gene G2FUF-33107 BioCyc
Ensembl Genes ENSRNOG00000025140 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000059224 ENTREZGENE
  ENSRNOP00000059224.2 UniProtKB/TrEMBL
  ENSRNOP00000092217.1 UniProtKB/TrEMBL
  ENSRNOP00000092695.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068291 ENTREZGENE
  ENSRNOT00000068291.3 UniProtKB/TrEMBL
  ENSRNOT00000093363.2 UniProtKB/TrEMBL
  ENSRNOT00000094312.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:362925 UniProtKB/TrEMBL
NCBI Gene 362925 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN ZFAT UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_5 UniProtKB/TrEMBL
PhenoGen Zfat PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A1W2Q6E1 ENTREZGENE
  A0A8I6AGQ2_RAT UniProtKB/TrEMBL
  A0A8I6GJX1_RAT UniProtKB/TrEMBL
  D4A2U0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-05-02 Zfat  zinc finger and AT hook domain containing  Zfat1  ZFAT zinc finger 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Zfat1  ZFAT zinc finger 1  Zfp406_predicted  zinc finger protein 406 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Zfp406_predicted  zinc finger protein 406 (predicted)      Symbol and Name status set to approved 70820 APPROVED