Zfand5 (zinc finger AN1-type containing 5)

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Gene: Zfand5 (zinc finger AN1-type containing 5) Rattus norvegicus

Analyze

Symbol:

Zfand5

Name:

zinc finger AN1-type containing 5

RGD ID:

1310776

Description:

Predicted to have DNA binding activity and zinc ion binding activity. Predicted to be involved in several processes, including face development; fibroblast migration; and respiratory system process. Predicted to localize to cytoplasm. Orthologous to human ZFAND5 (zinc finger AN1-type containing 5); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

AN1-type zinc finger protein 5; LOC293960; Zfp216; zinc finger protein 216; zinc finger, AN1-type domain 5

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZFAND5 (zinc finger AN1-type containing 5)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfand5 (zinc finger, AN1-type domain 5)	HGNC	Treefam, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Zfand5 (zinc finger AN1-type containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZFAND5 (zinc finger AN1-type containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZFAND5 (zinc finger AN1-type containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zfand5 (zinc finger AN1-type containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZFAND5 (zinc finger AN1-type containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ZFAND5 (zinc finger AN1-type containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zfand5 (zinc finger AN1-type containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Zfand5 (zinc finger, AN1-type domain 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	ZFAND5 (zinc finger AN1-type containing 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	zfand5a (zinc finger, AN1-type domain 5a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	zfand5b (zinc finger, AN1-type domain 5b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG15368	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	F22D6.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG45050	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	1	238,842,506 - 238,854,030 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	238,843,338 - 238,852,566 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	246,131,037 - 246,141,413 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	224,442,733 - 224,448,701 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	224,599,098 - 224,612,452 (+)	NCBI
Celera	1	216,025,336 - 216,031,304 (+)	NCBI		Celera
Cytogenetic Map	1	q51	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

alpha-pinene (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

chloroform (ISO)

chloropicrin (ISO)

chromium(6+) (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

fluoranthene (ISO)

flutamide (EXP)

folic acid (ISO)

indometacin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

leflunomide (EXP,ISO)

methyl methanesulfonate (ISO)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

ozone (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (ISO)

toluene (EXP)

trichostatin A (ISO)

trovafloxacin (ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

face development (ISO)

fibroblast migration (ISO)

in utero embryonic development (ISO)

platelet-derived growth factor receptor signaling pathway (ISO)

respiratory system process (ISO)

skeletal system morphogenesis (ISO)

smooth muscle tissue development (ISO)

vasculature development (ISO)

Cellular Component

cytoplasm (IEA)

Molecular Function

DNA binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated


1.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17143286

Genomics

Comparative Map Data

Zfand5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	1	238,842,506 - 238,854,030 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	238,843,338 - 238,852,566 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	246,131,037 - 246,141,413 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	224,442,733 - 224,448,701 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	224,599,098 - 224,612,452 (+)	NCBI
Celera	1	216,025,336 - 216,031,304 (+)	NCBI		Celera
Cytogenetic Map	1	q51	NCBI

ZFAND5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	9	72,351,413 - 72,365,235 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	9	72,351,413 - 72,365,208 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	9	74,966,341 - 74,980,163 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	74,156,161 - 74,169,983 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	9	72,198,927 - 72,209,446	NCBI
Celera	9	45,539,096 - 45,552,933 (-)	NCBI
Cytogenetic Map	9	q21.13	NCBI
HuRef	9	44,789,852 - 44,803,687 (-)	NCBI		HuRef
CHM1_1	9	75,113,014 - 75,126,847 (-)	NCBI		CHM1_1

Zfand5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	21,249,150 - 21,264,204 (+)	NCBI	GRCm39		mm39
GRCm38	19	21,271,786 - 21,286,840 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	21,272,278 - 21,286,840 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	21,346,768 - 21,356,779 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	19	21,339,375 - 21,349,386 (+)	NCBI			mm8
Celera	19	21,998,177 - 22,007,973 (+)	NCBI		Celera
Cytogenetic Map	19	B	NCBI
cM Map	19	14.32	NCBI

Zfand5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955434	841,409 - 847,598 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955434	841,410 - 847,598 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZFAND5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	71,144,900 - 71,154,993 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	71,144,900 - 71,154,869 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	52,446,788 - 52,457,527 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

ZFAND5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	1	85,420,127 - 85,428,424 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	1	85,420,091 - 85,429,843 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Zfand5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936503	8,377,544 - 8,382,530 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZFAND5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	225,703,199 - 225,714,365 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	225,703,027 - 225,714,522 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	252,229,611 - 252,241,057 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZFAND5
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	83,403,552 - 83,414,572 (-)	NCBI
ChlSab1.1 Ensembl	12	83,401,111 - 83,414,591 (-)	Ensembl

Zfand5
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624736	611,726 - 621,360 (+)	NCBI

Position Markers

D9S1986

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	238,852,007 - 238,852,282	NCBI	Rnor6.0
Rnor_5.0	1	246,140,579 - 246,140,854	UniSTS	Rnor5.0
RGSC_v3.4	1	224,447,867 - 224,448,142	UniSTS	RGSC3.4
Celera	1	216,030,470 - 216,030,745	UniSTS
Cytogenetic Map	1	q51	UniSTS

RH132680

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	238,841,935 - 238,842,153	NCBI	Rnor6.0
Rnor_5.0	1	246,130,507 - 246,130,725	UniSTS	Rnor5.0
RGSC_v3.4	1	224,437,794 - 224,438,012	UniSTS	RGSC3.4
Celera	1	216,020,411 - 216,020,629	UniSTS
Cytogenetic Map	1	q51	UniSTS
RH 3.4 Map	7	297.8	UniSTS

AW531357

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	238,855,216 - 238,855,389	NCBI	Rnor6.0
Rnor_5.0	1	246,143,788 - 246,143,961	UniSTS	Rnor5.0
RGSC_v3.4	1	224,451,076 - 224,451,249	UniSTS	RGSC3.4
Celera	1	216,033,679 - 216,033,852	UniSTS
Cytogenetic Map	1	q51	UniSTS
RH 3.4 Map	1	1615.01	UniSTS

AU021721

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	238,850,332 - 238,851,015	NCBI	Rnor6.0
Rnor_5.0	1	246,138,904 - 246,139,587	UniSTS	Rnor5.0
RGSC_v3.4	1	224,446,192 - 224,446,875	UniSTS	RGSC3.4
Celera	1	216,028,795 - 216,029,478	UniSTS
Cytogenetic Map	1	q51	UniSTS

MARC_26819-26820:1034280769:3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	238,847,486 - 238,848,174	NCBI	Rnor6.0
Rnor_5.0	1	246,136,058 - 246,136,746	UniSTS	Rnor5.0
RGSC_v3.4	1	224,443,346 - 224,444,034	UniSTS	RGSC3.4
Celera	1	216,025,949 - 216,026,637	UniSTS
Cytogenetic Map	1	q51	UniSTS

RH124463

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	238,850,288 - 238,850,993	NCBI	Rnor6.0
Rnor_5.0	1	246,138,860 - 246,139,565	UniSTS	Rnor5.0
RGSC_v3.4	1	224,446,148 - 224,446,853	UniSTS	RGSC3.4
Celera	1	216,028,751 - 216,029,456	UniSTS
Cytogenetic Map	1	q51	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2292216	Bw80	Body weight QTL 80	3.23	0.0019	body mass (VT:0001259)	body weight (CMO:0000012)	1	233490105	264802994	Rat
2292218	Kidm35	Kidney mass QTL 35			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	217372257	244992610	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	236795785	281795785	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	236265430	281265430	Rat
2302375	Bw83	Body weight QTL 83	4.87	0.0002	body mass (VT:0001259)	body weight (CMO:0000012)	1	215711860	260711860	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	156446196	274977688	Rat
61455	Niddm7	Non-insulin dependent diabetes mellitus QTL 7	5.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	236763415	258766873	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	161321152	273792054	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	238830534	278228767	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	233663100	273792054	Rat
734768	Niddm59	Non-insulin dependent diabetes mellitus QTL 59			body mass (VT:0001259)	body weight (CMO:0000012)	1	235850810	280850810	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	156446196	243311614	Rat
1298084	Thym4	Thymus enlargement QTL 4	10.68		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	215828102	260828102	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	216324817	261324817	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	197963658	242963658	Rat
1331790	Bp201	Blood pressure QTL 201	3.127		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	216213318	245529710	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	167394665	278228889	Rat
1582206	Kidm33	Kidney mass QTL 33	6.9		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	205603081	244401301	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	191825895	279986079	Rat
1300168	Bp170	Blood pressure QTL 170	2.76		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	227107736	249206417	Rat
1641926	Teswt2	Testicular weight QTL 2	2.82		testis mass (VT:1000644)	both testes wet weight (CMO:0000175)	1	215711860	258765521	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	238824734	279986079	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	221901238	266901238	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	221901238	266901238	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	221901238	266901238	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	221901238	266901238	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	205195290	250195290	Rat
634312	Bp143	Blood pressure QTL 143	3	0.0002	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	198446729	240017341	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	217054291	281795785	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	193968438	261264776	Rat
634340	Hcar5	Hepatocarcinoma resistance QTL 5	8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	236763415	247065599	Rat
1357335	Bw39	Body weight QTL 39	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	1	215828102	260828102	Rat
1357399	Bw45	Body weight QTL 45	3.05		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	1	225689973	270689973	Rat
1357404	Bw42	Body weight QTL 42	4.49	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	1	225689973	270689973	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	195598053	265002735	Rat
1600374	Mcs17	Mammary carcinoma susceptibility QTL 17	3		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	215684498	260684498	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	194554354	239554354	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	213476630	278978026	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	213476630	278978026	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	213476630	278978026	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	226706329	271706329	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	161321256	273791893	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	196395041	282763074	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	161321256	273791893	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	82788437	239853971	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	201146802	241482368	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	161784169	278228889	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	192639698	278228889	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	161784169	278228889	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	192639698	278228889	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	161784169	278228889	Rat
1549910	Bw54	Body weight QTL 54		0.05	body mass (VT:0001259)	body weight (CMO:0000012)	1	236795785	281795785	Rat
1558658	Bw59	Body weight QTL 59	3.5	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	1	196738546	241738546	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	163796316	282763074	Rat
1358191	Ept10	Estrogen-induced pituitary tumorigenesis QTL 10	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	210360774	264802828	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	174905700	264802994	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	198655722	244992610	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	201358068	252480016	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	161784422	246226103	Rat
1358890	Bp259	Blood pressure QTL 259	3.06		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	230420627	282645769	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	208517798	266948272	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	230420627	262031693	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	0.00000081	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	216324817	261324817	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	236265430	281265430	Rat
61376	Bp42	Blood pressure QTL 42	23.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	215828102	260828102	Rat
61400	Niddm1	Non-insulin dependent diabetes mellitus QTL 1	11		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	238830408	266793958	Rat
61403	Niddm4	Non-insulin dependent diabetes mellitus QTL 4			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	225689973	247836969	Rat
5508828	Leukc3	Leukocyte quantity QTL 3			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	1	238220189	244401301	Rat
8693618	Alc25	Alcohol consumption QTL 25	3	0.28	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	227509470	249252048	Rat
8693661	Alc34	Alcohol consumption QTL 34	2.2	0.611	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	227509470	249252048	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	202571665	264802994	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	122614824	262664716	Rat
8693637	Alc29	Alcohol consumption QTL 29	2.7	0.258	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	227509470	255131140	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	144634295	241482368	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	125875758	262433692	Rat
8552891	Epfw5	Epididymal fat weight QTL 5	4.4		epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	1	210652654	255652654	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	221901238	266901238	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	202571665	264802994	Rat
10059587	Bw173	Body weight QTL 173	3.23	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	1	222492538	267492538	Rat
10059590	Kidm44	Kidney mass QTL 44	3.42	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	210990171	255990171	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	194872362	239872362	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	153
Count of miRNA genes:	116
Interacting mature miRNAs:	130
Transcripts:	ENSRNOT00000024583
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07006536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01009907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000024583 ⟹ ENSRNOP00000024583

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	238,843,338 - 238,852,566 (+)	Ensembl

RefSeq Acc Id:

NM_001106356 ⟹ NP_001099826

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	238,846,873 - 238,852,841 (+)	NCBI
Rnor_5.0	1	246,131,037 - 246,141,413 (+)	NCBI
RGSC_v3.4	1	224,442,733 - 224,448,701 (+)	RGD
Celera	1	216,025,336 - 216,031,304 (+)	RGD

Sequence:

show sequence

CACAAAAATATGGCTCAGGAGACTAACCAGACCCCAGGGCCCATGCTGTGTAGTACTGGATGTG
GCTTTTATGGGAATCCTAGGACAAATGGAATGTGTTCTGTTTGCTACAAAGAACATCTTCAGAG
ACAGCAGAATAGTGGCAGAATGAGCCCAATGGGTAAGTTGTTTCCAAGAAAAAAACACTTGAAC
TGGTGGAGAGAAAATCTAAGAATCAAGAATGTCGAAAAATCAAGGAGAGAATGCCTGACTGACA
AGAACTTAACATAAGACAACAGCCCAAGTGCATTGCTACCTCAAGAACAAATGGCTATTCTGCA
GACTTCTTATAACATTCTTAGTTTTCTTTTTGGAAGTTTTGTTTTATACATGTGTTTTTTGGGA
TATGACTCTTTTTTTGTCTGAATGTCAAGTATAGGATTGCAGTGCAGTGAAGGTGCTTAGATCG
CTAAATTAAATGCAAGTATTGATACTTACTAAGTCTTTATTAAGTGGGTTTTTGTAGTGCTGAT
TTGTGTCTTACCGGGTTCTCTTTTTACATAGGGACAGCTAGTGGTTCCAACAGTCCTACCTCAG
ACTCTGCGTCTGTACAAAGAGCAGATGCTACTTTAAACAACTGTGAAGGTGCTGCTGGCAGCAC
ATCTGAAAAATCAAGAAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATG
AGCATTTCAAGAGAGGACAAAATAACCTCCCCGAAAACAGAGGTGTCAGAGCCAGTTGTCACTC
AGCCCAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCC
CAAACCAAAGAAGAACAGATGTTTTATGTGTAGAAAGAAAGTTGGCCTTACAGGGTTTGACTGC
CGATGTGGAAATTTGTTTTGTGGACTTCACCGTTACTCTGACAAGCACAACTGTCCTTATGATT
ACAAAGCAGAAGCTGCAGCAAAAATCAGAAAAGAAAATCCAGTTGTTGTGGCTGAAAAAATCCA
GAGAATATAAAATTACTACATGTGAAGAGACTGAAACTTTGTTTTTATTTTAATATATCGTAGG
AAAACATTAAAGAGCAGATGCATGGCCATTTTCCTTTGATGTTCTCCAGAGTTTTGCTTTATAC
TTGTCTGTCATATAATTGATATTTTAGGATGTTTGGGTGTTTGTTACAGGCAGAATTGGATAGA
TACAGCCCAACAAATGTATATGCCCTCCCCTCAGTAAAATTGGACAAAAATATGCACAGCAAAT
TGAAATACACATATACTAGGAACAAAATTTAGTTCCATGTGCCAAACTGAATGAAATCTCTGCA
TGTTTGCAGCATATCTGCCTTTTGGGAATGTAATCAAGGTATAATCTTTGGCTAGTGTTATGTG
CCTGTACTTTAAAAAAATGGTACACCAGAAAAGGACTGGCAGTCTACTACCATAGTCAAACTTC
ACCTTAATTTCGACATGCTTTTGGAAGCAGGAAGAAAGCTACAAAACCAGTATTTGGTGCCATG
TGTGAGCCTGGTTAAATTGGTCTTCTAAAAGCTGTCAATTAGGACATTCTGCGAAAGGTAACAT
CACAACTGGTTCTGAGTAAAACCATCAAGTCAACAGCAGGGTGCCTGAGATAATCTTTGAAGCT
TATTGTGCTGGCCTGCACCAGAAGATATCTGCATTCTCATTACTAAAATTGTAGCACAGAACTG
CACTAGGATTTGTTTACAAGAAGAAATTAAAACTCTACGTTTGGTTTTCACATATAGCAGCTCT
GTTAAATAACATGCATCTGAATTTTAAGTTGCAAAGGTATCTGAGCAGTTAGTTTTTCATGTGC
ATCTTTTGTTGAATGTTTTGGTTCAAGAAAGAATGTTTAAAGCTTTTTAAAGACTTCAGTTCTT
AATGTAACTGTACCCTTCTGCATGGAAAATCATAACCAACATGGCTGCAGTAGACTTCTTTAGT
GGTATCCAGCACCACTTGCAGAGGGCTGCTTTATCATATTGTATTTGGGTGTAGGACTCTAGTG
TTCTTGGGTGTATTGCATGGGCTGCATTATCTACAGCATTGTACAATAACAACTAGAAAAGGCA
GTATACTTCACTGATGCTTGTCTGGTAATATCACTTCTGTGTTATAATGGAAGGTTTTTTGTGA
TGTATGAAACTTGTGTTTTTTATATATAAATGAGTATAGTTAGATTAGTGTTGTGGTAATGCCT
GTTTTCATCTGTAAATAGTTAAGTATGTACACAAGGCACTACTTCTGATTTATTGCAGTGTTCA
GTCCTAGTTTTTCTTTATTAAAACATTCAGTTTTGCTTCAATTTTATGTACTTTAGTTCTAAGT
TAGATTTGCAGATGTGTACAGATAGTTCATATTTATGTATTGCACATAATCATGCTATTCAGCA
TTGATGCTATATTGTATTATGTAAATAATAAAAGCAGTGTACAGAGGGAAACTTCTTGTTCATT
GGGTTTTTAAGCCTTGGACACCTAAACAGAGAAAATAGGAAAGTTTTCATATTCAAATTTATTA
GTTAATTTCATATAGCTTTGTACTACAAAGTTATTTTGGCATGGTCATTCTTGAATTCAGTCAC
GTGAATACCATGAGCTGGTCATGAATCTTTCTCAGGTGTGGCATTATGATAGGCAAATTTCGAA
GAGTGAGATGGGCACCATTAATATGAAGCAGTCCTAAAATTTGAGAAAGGAATGAAATTTAAAT
AAT

hide sequence

RefSeq Acc Id:

XM_008760297 ⟹ XP_008758519

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	238,842,506 - 238,854,030 (+)	NCBI

Sequence:

show sequence

GCGGCGGCAGGCGGAGCTGCGGCGACACCCGGAACCCTGCCAGCCTCCTCCGGGCCGCACCTTC
CCGTCCCGCGGGGAGGGGACCCCAGCGGAGCTGGGGACGAAGCGTGAGAACTGGGTTGGCGGGG
GAGGCTGAGGGCGGACAATAGGGTTAAAAATAGAAGCGCTGCCTCCTTGGACCCGCCGCAGCAG
CTCCACCCAGGCCCCGGCGGGCCGGAGGGTGACTAGGCTACGGTGACCGCAGCCTCCGGGCTCG
CCCCGCCCCCAAGCGCGGCCCCGCCCCCAGCTGGTGCCTGCAGGCCAGGGGCGGGGCCTTGCCC
CGCGACGTCATCGCGCTGCAGGCGTGCCGACCGGGTTTTCGCTGACGCACAGGCCCCGCCTCCG
CCGCCCTTTCCCTCAGATCCCGAACGCTGGTCAGAGCTAGAGCGTCAGTCGTCCGGATCGTGGA
GCTGTGTGCATCTCGTCGTCAGTCGTCCGCTCGCCGCCCGAAGTCGCGCAGCTTCCCTGGCGAA
CGCGGAAGCCCGAAGAGCGCCGTCCTCGGGCCCTGTCGGCGCTCAGGCCCCTTCGCGCGCCTCC
TCGCTCGGCCGGGACGTTGCTGTGGAGGCGTGAGGCGCCGGCGGTCGAGCACCTGGAGCGACGG
TAGCCCGCGGCCTGCGGTTCTTCTCCTCCCCCGCCGCCCTCCCACCCGAGCTGCGGCGGGGCTC
GGCCGCCTCGGTGCTTCTGCACGAACAAAGGAGGCCCCCGCGGCGCCGGCGCAGCTCCATCTGC
GGTCCGATCCACCCGGGCCCGCGGCGGCCGCTAGCCAGCCCTTCCCGGAGGCCTCAGCCCGGCC
CACCGCCCGGCGTCGCGCGCCAGCTCGCTAGTGCATCCGGGCCCCGCAGGCACAAAAATATGGC
TCAGGAGACTAACCAGACCCCAGGGCCCATGCTGTGTAGTACTGGATGTGGCTTTTATGGGAAT
CCTAGGACAAATGGAATGTGTTCTGTTTGCTACAAAGAACATCTTCAGAGACAGCAGAATAGTG
GCAGAATGAGCCCAATGGGGACAGCTAGTGGTTCCAACAGTCCTACCTCAGACTCTGCGTCTGT
ACAAAGAGCAGATGCTACTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCA
AGAAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAG
AGGACAAAATAACCTCCCCGAAAACAGAGGTGTCAGAGCCAGTTGTCACTCAGCCCAGTCCATC
AGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAG
AACAGATGTTTTATGTGTAGAAAGAAAGTTGGCCTTACAGGGTTTGACTGCCGATGTGGAAATT
TGTTTTGTGGACTTCACCGTTACTCTGACAAGCACAACTGTCCTTATGATTACAAAGCAGAAGC
TGCAGCAAAAATCAGAAAAGAAAATCCAGTTGTTGTGGCTGAAAAAATCCAGAGAATATAAAAT
TACTACATGTGAAGAGACTGAAACTTTGTTTTTATTTTAATATATCGTAGGAAAACATTAAAGA
GCAGATGCATGGCCATTTTCCTTTGATGTTCTCCAGAGTTTTGCTTTATACTTGTCTGTCATAT
AATTGATATTTTAGGATGTTTGGGTGTTTGTTACAGGCAGAATTGGATAGATACAGCCCAACAA
ATGTATATGCCCTCCCCTCAGTAAAATTGGACAAAAATATGCACAGCAAATTGAAATACACATA
TACTAGGAACAAAATTTAGTTCCATGTGCCAAACTGAATGAAATCTCTGCATGTTTGCAGCATA
TCTGCCTTTTGGGAATGTAATCAAGGTATAATCTTTGGCTAGTGTTATGTGCCTGTACTTTAAA
AAAATGGTACACCAGAAAAGGACTGGCAGTCTACTACCATAGTCAAACTTCACCTTAATTTCGA
CATGCTTTTGGAAGCAGGAAGAAAGCTACAAAACCAGTATTTGGTGCCATGTGTGAGCCTGGTT
AAATTGGTCTTCTAAAAGCTGTCAATTAGGACATTCTGCGAAAGGTAACATCACAACTGGTTCT
GAGTAAAACCATCAAGTCAACAGCAGGGTGCCTGAGATAATCTTTGAAGCTTATTGTGCTGGCC
TGCACCAGAAGATATCTGCATTCTCATTACTAAAATTGTAGCACAGAACTGCACTAGGATTTGT
TTACAAGAAGAAATTAAAACTCTACGTTTGGTTTTCACATATAGCAGCTCTGTTAAATAACATG
CATCTGAATTTTAAGTTGCAAAGGTATCTGAGCAGTTAGTTTTTCATGTGCATCTTTTGTTGAA
TGTTTTGGTTCAAGAAAGAATGTTTAAAGCTTTTTAAAGACTTCAGTTCTTAATGTAACTGTAC
CCTTCTGCATGGAAAATCATAACCAACATGGCTGCAGTAGACTTCTTTAGTGGTATCCAGCACC
ACTTGCAGAGGGCTGCTTTATCATATTGTATTTGGGTGTAGGACTCTAGTGTTCTTGGGTGTAT
TGCATGGGCTGCATTATCTACAGCATTGTACAATAACAACTAGAAAAGGCAGTATACTTCACTG
ATGCTTGTCTGGTAATATCACTTCTGTGTTATAATGGAAGGTTTTTTGTGATGTATGAAACTTG
TGTTTTTTATATATAAATGAGTATAGTTAGATTAGTGTTGTGGTAATGCCTGTTTTCATCTGTA
AATAGTTAAGTATGTACACAAGGCACTACTTCTGATTTATTGCAGTGTTCAGTCCTAGTTTTTC
TTTATTAAAACATTCAGTTTTGCTTCAATTTTATGTACTTTAGTTCTAAGTTAGATTTGCAGAT
GTGTACAGATAGTTCATATTTATGTATTGCACATAATCATGCTATTCAGCATTGATGCTATATT
GTATTATGTAAATAATAAAAGCAGTGTACAGAGGGAAACTTCTTGTTCATTGGGTTTTTAAGCC
TTGGACACCTAAACAGAGAAAATAGGAAAGTTTTCATATTCAAATTTATTAGTTAATTTCATAT
AGCTTTGTACTACAAAGTTATTTTGGCATGGTCATTCTTGAATTCAGTCACGTGAATACCATGA
GCTGGTCATGAATCTTTCTCAGGTGTGGCATTATGATAGGCAAATTTCGAAGAGTGAGATGGGC
ACCATTAATATGAAGCAGTCCTAAAATTTGAGAAAGGAATGAAATTTAAATAATTGTTCATCCC
TCTCCCCTTTTTTTTTTCCTGGTTAAACAACCCTGAATGGAGATGTAGGTGCTTAAACAAAAAA
CAATTGCTTTATTCCGTATGGGTTTGGATCTAGAGAGGAGAAAATTAATTCAATGCAAGTCTTA
CACTTAGATAAGAAATAACATTTAAATGCTCCAGACTAAATGAAGTCAAGAATAAAACCATTGC
TTATCAGAGATGACTAGAAATAGTGCAACTCCTGCCTATCCACCCTTGAGGATTACTACTTGTA
GATGAAGTATAAATGTTTTACAGAAGTCCATGGTTTGAACAGTAGTAGTACCCCTCAGTTTTGG
GTATTGCATCCCTTGAGTTGAAAACAAGGCATTTAAAAGGAGAACTTGTTTTTAAAATGACTAC
TCTTCACAAGTGTCAACAAATGCTTCAGTACTTTGCCATTTTTTTTTGTTTGTTGGACTAAACC
AAGTCTCATGCATGTTAAAGGAAGTGCTCTTCTGAAGGCTGTGTGGGAGTCCCTGCTCTCTCAG
TTTGTGAAAGCTTCAGTAGCAAGATATTACAATAGTGATAGCATAATCATATTTTGGGACAGAG
ACTTATGTGGGGGTCTTAACCCTAGTTCACAGTGTAGCCCAAGTTAGCCTGTTACTTGTAATCC
TGCCTTAGCTAACTTCCAGGGTGCTGAGATTATAGGAATGAGCTCTTGACTATTCAAATACTCA
TATACATAGGAACTTTGAAGATTTTGGTTTAGATAATCTGTCAGGAACATCAACCAGGGAGAAT
GATTTCAGGAAGGAACCAAGGAAGAGTTGAGTTCTTCATAGATGCTTGGACTCGATGTGTGACT
CATTCCAGACTGATAAGTGCTGTGCACATTGAAGTTAAGTTATGTTACGTAACTAGGCAAATCT
TTGCGTGTAATCTAATGGGCCTCATCTGTTAAGCTTGGACTTCTAACCCAGTGAGTGGTTAGGA
GAAGGATGATTTTGTTTTGTAGTGCTAAGGATGAGGTATAGGTTGTCATTGGACAAGTCACTCC
TTACCACACTGCCCTGCCTCATTTGTTAGGATGATAATAAATACCTAATTCAGGAATGTCCAGA
AAGCACTTAAGGGTTCCTGCCACAATACTTACTATTTAATTTCTCAGGATGAACTTTAGAACTT
GAAGGAAACAATGAGTTTGGTTGCAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099826	(Get FASTA)	NCBI Sequence Viewer
	XP_008758519	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68882	(Get FASTA)	NCBI Sequence Viewer
	B5DF11	(Get FASTA)	NCBI Sequence Viewer
	EDM13001	(Get FASTA)	NCBI Sequence Viewer
	EDM13002	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001099826 ⟸ NM_001106356
- Sequence:	show sequence MTEMSISREDKITSPKTEVSEPVVTQPSPSVSQPSSSQSEEKAPELPKPKKNRCFMCRKKVGLT GFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI hide sequence

RefSeq Acc Id:	XP_008758519 ⟸ XM_008760297
- Peptide Label:	isoform X1
- UniProtKB:	B5DF11 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSA SVQRADATLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITSPKTEVSEPVVTQPS PSVSQPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKA EAAAKIRKENPVVVAEKIQRI hide sequence

RefSeq Acc Id:

ENSRNOP00000024583 ⟸ ENSRNOT00000024583

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310776	AgrOrtholog
Ensembl Genes	ENSRNOG00000018107	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000024583	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000024583	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	4.10.1110.10	UniProtKB/Swiss-Prot
InterPro	AN1-like_Znf	UniProtKB/Swiss-Prot
	Znf_A20	UniProtKB/Swiss-Prot
	Znf_AN1	UniProtKB/Swiss-Prot
NCBI Gene	293960	ENTREZGENE
Pfam	zf-A20	UniProtKB/Swiss-Prot
	zf-AN1	UniProtKB/Swiss-Prot
PhenoGen	Zfand5	PhenoGen
PROSITE	ZF_A20	UniProtKB/Swiss-Prot
	ZF_AN1	UniProtKB/Swiss-Prot
SMART	ZnF_A20	UniProtKB/Swiss-Prot
	ZnF_AN1	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF118310	UniProtKB/Swiss-Prot
UniGene	Rn.4050	ENTREZGENE
UniProt	B5DF11	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Zfand5	zinc finger AN1-type containing 5	Zfand5	zinc finger, AN1-type domain 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	Zfand5	zinc finger, AN1-type domain 5	Zfp216_predicted	zinc finger protein 216 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Zfp216_predicted	zinc finger protein 216 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD