Ifi30 (IFI30, lysosomal thiol reductase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ifi30 (IFI30, lysosomal thiol reductase) Rattus norvegicus
Analyze
Symbol: Ifi30
Name: IFI30, lysosomal thiol reductase
RGD ID: 1310758
Description: Predicted to enable oxidoreductase activity, acting on a sulfur group of donors. Predicted to be involved in antigen processing and presentation of exogenous peptide antigen via MHC class I. Predicted to act upstream of or within antigen processing and presentation of exogenous peptide antigen via MHC class II; negative regulation of fibroblast proliferation; and protein stabilization. Predicted to be located in cell junction; cytosol; and intracellular membrane-bounded organelle. Predicted to be active in lysosome. Orthologous to human IFI30 (IFI30 lysosomal thiol reductase); PARTICIPATES IN antigen processing and presentation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrobenzenesulfonic acid; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: gamma-interferon-inducible lysosomal thiol reductase; interferon gamma inducible protein 30; LOC290644; MGC124690
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,709,570 - 18,713,635 (+)NCBIGRCr8
mRatBN7.21618,675,590 - 18,679,655 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,675,613 - 18,681,175 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,717,984 - 18,722,037 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,850,664 - 19,854,717 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,770,928 - 18,774,981 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,426,566 - 20,430,772 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,426,566 - 20,430,752 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,283,634 - 20,287,840 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,181,236 - 19,185,438 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,181,233 - 19,185,350 (+)NCBI
Celera1618,867,868 - 18,872,074 (+)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4-diaminotoluene  (ISO)
2,6-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetylsalicylic acid  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenamidone  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
Licochalcone B  (ISO)
lidocaine  (EXP)
lucanthone  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
pemetrexed  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propanal  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
topiramate  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10639150   PMID:11701933   PMID:12477932   PMID:17142755   PMID:18218638   PMID:20538950  


Genomics

Comparative Map Data
Ifi30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,709,570 - 18,713,635 (+)NCBIGRCr8
mRatBN7.21618,675,590 - 18,679,655 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,675,613 - 18,681,175 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,717,984 - 18,722,037 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,850,664 - 19,854,717 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,770,928 - 18,774,981 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,426,566 - 20,430,772 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,426,566 - 20,430,752 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,283,634 - 20,287,840 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,181,236 - 19,185,438 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,181,233 - 19,185,350 (+)NCBI
Celera1618,867,868 - 18,872,074 (+)NCBICelera
Cytogenetic Map16p14NCBI
IFI30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381918,173,813 - 18,178,117 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1918,173,162 - 18,178,117 (+)EnsemblGRCh38hg38GRCh38
GRCh371918,284,623 - 18,288,927 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,145,579 - 18,149,927 (+)NCBINCBI36Build 36hg18NCBI36
Build 341918,145,578 - 18,149,927NCBI
Celera1918,186,321 - 18,190,669 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,848,103 - 17,852,447 (+)NCBIHuRef
CHM1_11918,284,148 - 18,288,492 (+)NCBICHM1_1
T2T-CHM13v2.01918,307,946 - 18,312,247 (+)NCBIT2T-CHM13v2.0
Ifi30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,215,418 - 71,219,307 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,215,419 - 71,219,307 (-)EnsemblGRCm39 Ensembl
GRCm38870,762,773 - 70,766,663 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,762,774 - 70,766,663 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,286,672 - 73,290,562 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,691,762 - 73,695,638 (-)NCBIMGSCv36mm8
Celera873,324,071 - 73,327,964 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
Ifi30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,229,257 - 3,231,825 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,229,024 - 3,230,955 (-)NCBIChiLan1.0ChiLan1.0
IFI30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22023,033,781 - 23,038,762 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11922,042,802 - 22,047,108 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01917,652,935 - 17,657,239 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11918,629,663 - 18,634,374 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,629,663 - 18,635,046 (+)Ensemblpanpan1.1panPan2
IFI30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,819,862 - 44,823,261 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2044,819,893 - 44,823,342 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,733,377 - 44,736,798 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,305,204 - 45,308,613 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,305,216 - 45,308,597 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12044,542,363 - 44,545,785 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,952,851 - 44,956,279 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,228,348 - 45,231,774 (-)NCBIUU_Cfam_GSD_1.0
Ifi30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,454,223 - 203,458,200 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,002,809 - 3,007,383 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,003,366 - 3,007,003 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFI30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,629,767 - 59,633,733 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,629,762 - 59,633,714 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,214,057 - 59,218,009 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IFI30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,644,361 - 16,649,599 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl616,644,392 - 16,649,751 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660742,730,359 - 2,735,694 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ifi30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,525,185 - 1,527,978 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,525,290 - 1,528,202 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ifi30
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:45
Interacting mature miRNAs:48
Transcripts:ENSRNOT00000026225
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 4 7 62 35 35 11 4
Low 4 4 12 6 4
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000026225   ⟹   ENSRNOP00000026225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1618,675,631 - 18,679,866 (+)Ensembl
Rnor_6.0 Ensembl1620,426,566 - 20,430,752 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097172   ⟹   ENSRNOP00000076870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1618,675,613 - 18,681,175 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108678   ⟹   ENSRNOP00000078857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1618,675,613 - 18,680,135 (+)Ensembl
RefSeq Acc Id: NM_001030026   ⟹   NP_001025197
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81618,709,570 - 18,713,635 (+)NCBI
mRatBN7.21618,675,590 - 18,679,655 (+)NCBI
Rnor_6.01620,426,566 - 20,430,772 (+)NCBI
Rnor_5.01620,283,634 - 20,287,840 (+)NCBI
RGSC_v3.41619,181,236 - 19,185,438 (+)RGD
Celera1618,867,868 - 18,872,074 (+)RGD
Sequence:
RefSeq Acc Id: NP_001025197   ⟸   NM_001030026
- Peptide Label: precursor
- UniProtKB: Q5I0J7 (UniProtKB/Swiss-Prot),   Q499T2 (UniProtKB/Swiss-Prot),   A0A8I5Y6G3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000026225   ⟸   ENSRNOT00000026225
RefSeq Acc Id: ENSRNOP00000076870   ⟸   ENSRNOT00000097172
RefSeq Acc Id: ENSRNOP00000078857   ⟸   ENSRNOT00000108678

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q499T2-F1-model_v2 AlphaFold Q499T2 1-248 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700017
Promoter ID:EPDNEW_R10539
Type:single initiation site
Name:Ifi30_1
Description:IFI30, lysosomal thiol reductase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01620,426,680 - 20,426,740EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310758 AgrOrtholog
BioCyc Gene G2FUF-11807 BioCyc
Ensembl Genes ENSRNOG00000019387 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055009609 UniProtKB/Swiss-Prot
  ENSRNOG00060010787 UniProtKB/Swiss-Prot
  ENSRNOG00065023771 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000026225 ENTREZGENE
  ENSRNOT00000026225.8 UniProtKB/Swiss-Prot
  ENSRNOT00000097172.1 UniProtKB/TrEMBL
  ENSRNOT00000108678.1 UniProtKB/TrEMBL
  ENSRNOT00055016247 UniProtKB/Swiss-Prot
  ENSRNOT00060018266 UniProtKB/Swiss-Prot
  ENSRNOT00065040742 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7375607 IMAGE-MGC_LOAD
  IMAGE:7932222 IMAGE-MGC_LOAD
InterPro Interferon-induced_GILT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:290644 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109077 IMAGE-MGC_LOAD
  MGC:124690 IMAGE-MGC_LOAD
NCBI Gene 290644 ENTREZGENE
PANTHER GAMMA-INTERFERON-INDUCIBLE LYSOSOMAL THIOL REDUCTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13234 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GILT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ifi30 PhenoGen
RatGTEx ENSRNOG00000019387 RatGTEx
  ENSRNOG00055009609 RatGTEx
  ENSRNOG00060010787 RatGTEx
  ENSRNOG00065023771 RatGTEx
UniProt A0A8I5Y6G3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZLL2_RAT UniProtKB/TrEMBL
  GILT_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5I0J7 ENTREZGENE
UniProt Secondary Q5I0J7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-04 Ifi30  IFI30, lysosomal thiol reductase  Ifi30  interferon gamma inducible protein 30  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Ifi30  interferon gamma inducible protein 30  Ifi30_predicted  interferon gamma inducible protein 30 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ifi30_predicted  interferon gamma inducible protein 30 (predicted)      Symbol and Name status set to approved 70820 APPROVED