Emsy (EMSY transcriptional repressor, BRCA2 interacting) - Rat Genome Database

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Gene: Emsy (EMSY transcriptional repressor, BRCA2 interacting) Rattus norvegicus
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Symbol: Emsy
Name: EMSY transcriptional repressor, BRCA2 interacting
RGD ID: 1310712
Description: Predicted to enable identical protein binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be active in nucleoplasm. Orthologous to human EMSY (EMSY transcriptional repressor, BRCA2 interacting); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BRCA2-interacting transcriptional repressor EMSY; EMSY BRCA2-interacting transcriptional repressor; LOC361607; RGD1310712; similar to EMSY protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81162,295,167 - 162,364,742 (-)NCBIGRCr8
mRatBN7.21152,881,485 - 152,960,420 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1160,873,340 - 160,942,633 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01168,053,517 - 168,122,810 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01160,927,031 - 160,996,328 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01163,541,071 - 163,618,576 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1163,545,326 - 163,611,299 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,747,123 - 169,839,501 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41155,861,200 - 155,932,861 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11155,940,649 - 156,009,533 (-)NCBI
Celera1150,973,049 - 151,047,360 (-)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15947784  


Genomics

Comparative Map Data
Emsy
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81162,295,167 - 162,364,742 (-)NCBIGRCr8
mRatBN7.21152,881,485 - 152,960,420 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1160,873,340 - 160,942,633 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01168,053,517 - 168,122,810 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01160,927,031 - 160,996,328 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01163,541,071 - 163,618,576 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1163,545,326 - 163,611,299 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,747,123 - 169,839,501 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41155,861,200 - 155,932,861 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11155,940,649 - 156,009,533 (-)NCBI
Celera1150,973,049 - 151,047,360 (-)NCBICelera
Cytogenetic Map1q32NCBI
EMSY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381176,445,018 - 76,553,031 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1176,444,923 - 76,553,031 (+)EnsemblGRCh38hg38GRCh38
GRCh371176,156,062 - 76,264,075 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361175,833,717 - 75,940,237 (+)NCBINCBI36Build 36hg18NCBI36
Build 341175,833,716 - 75,940,236NCBI
Celera1173,463,866 - 73,570,375 (+)NCBICelera
Cytogenetic Map11q13.5NCBI
HuRef1172,452,941 - 72,559,477 (+)NCBIHuRef
CHM1_11176,039,558 - 76,146,132 (+)NCBICHM1_1
T2T-CHM13v2.01176,374,728 - 76,482,726 (+)NCBIT2T-CHM13v2.0
Emsy
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39798,236,344 - 98,308,779 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl798,236,344 - 98,305,990 (-)EnsemblGRCm39 Ensembl
GRCm38798,587,130 - 98,656,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl798,587,137 - 98,656,783 (-)EnsemblGRCm38mm10GRCm38
MGSCv377105,739,104 - 105,805,079 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36798,463,584 - 98,531,976 (-)NCBIMGSCv36mm8
Celera798,911,156 - 98,980,911 (-)NCBICelera
Cytogenetic Map7E1NCBI
cM Map753.86NCBI
Emsy
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541415,401,664 - 15,477,828 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541415,395,851 - 15,482,490 (-)NCBIChiLan1.0ChiLan1.0
EMSY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2977,367,342 - 77,476,035 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11178,412,566 - 78,520,514 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01171,496,577 - 71,604,230 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11174,932,490 - 75,029,953 (-)NCBIpanpan1.1PanPan1.1panPan2
EMSY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12122,149,131 - 22,289,857 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2122,149,127 - 22,289,875 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2121,976,172 - 22,066,414 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02122,349,723 - 22,440,312 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12122,124,481 - 22,214,924 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02122,344,100 - 22,434,365 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02122,263,335 - 22,353,692 (-)NCBIUU_Cfam_GSD_1.0
Emsy
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494763,530,876 - 63,613,738 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364985,130,470 - 5,213,919 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364985,130,503 - 5,213,341 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EMSY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl910,628,053 - 10,716,396 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1910,628,053 - 10,715,814 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2911,731,933 - 11,826,557 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EMSY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,657,747 - 67,762,157 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,657,753 - 67,760,610 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604358,025,648 - 58,131,443 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Emsy
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624817624,168 - 717,333 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624817634,134 - 719,387 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Emsy
258 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:42
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000020882, ENSRNOT00000030463, ENSRNOT00000043788
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1151162512201278233Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1151646613196646613Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144017057197814409Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
631202Gluco13Glucose level QTL 130.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1131763437159756369Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
631206Niddm40Non-insulin dependent diabetes mellitus QTL 40blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1136745990163747690Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
9685799Bp375Blood pressure QTL 375arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121833674166833674Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
9685802Bp376Blood pressure QTL 376arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1126540680171540680Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1123350408182418476Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1144267916172949660Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144267916174133260Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
2313060Bss71Bone structure and strength QTL 712.60.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1118944747163944747Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1136830018181830018Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501168883176Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512201278233Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350408181759564Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1123350408182418476Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1151162512201278233Rat

Markers in Region
D1Rat231  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21152,903,814 - 152,904,046 (+)MAPPERmRatBN7.2
Rnor_6.01163,563,403 - 163,563,634NCBIRnor6.0
Rnor_5.01169,766,954 - 169,767,185UniSTSRnor5.0
RGSC_v3.41155,880,320 - 155,880,552RGDRGSC3.4
RGSC_v3.41155,880,321 - 155,880,552UniSTSRGSC3.4
RGSC_v3.11155,958,727 - 155,958,958RGD
Celera1150,992,882 - 150,993,119UniSTS
RH 3.4 Map11212.8RGD
RH 3.4 Map11212.8UniSTS
RH 2.0 Map1786.8RGD
SHRSP x BN Map176.2299RGD
Cytogenetic Map1q32UniSTS
BE106040  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21152,928,670 - 152,928,880 (+)MAPPERmRatBN7.2
Rnor_6.01163,588,213 - 163,588,422NCBIRnor6.0
Rnor_5.01169,791,781 - 169,791,990UniSTSRnor5.0
RGSC_v3.41155,907,088 - 155,907,297UniSTSRGSC3.4
Celera1151,017,825 - 151,018,034UniSTS
RH 3.4 Map11209.99UniSTS
Cytogenetic Map1q32UniSTS
RH138509  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21152,954,529 - 152,954,701 (+)MAPPERmRatBN7.2
Rnor_6.01163,614,033 - 163,614,204NCBIRnor6.0
Rnor_5.01169,817,601 - 169,817,772UniSTSRnor5.0
RGSC_v3.41155,933,862 - 155,934,033UniSTSRGSC3.4
Celera1151,042,817 - 151,042,988UniSTS
RH 3.4 Map11210.9UniSTS
Cytogenetic Map1q32UniSTS
AI231560  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21152,900,560 - 152,900,780 (+)MAPPERmRatBN7.2
Rnor_6.01163,560,149 - 163,560,368NCBIRnor6.0
Rnor_5.01169,763,700 - 169,763,919UniSTSRnor5.0
RGSC_v3.41155,877,067 - 155,877,286UniSTSRGSC3.4
Celera1150,989,628 - 150,989,847UniSTS
RH 3.4 Map11210.3UniSTS
Cytogenetic Map1q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 27 22 6 19 6 1 1 74 25 40 11 1
Low 1 16 35 35 35 7 10 10 1 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001400843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY724538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000043788   ⟹   ENSRNOP00000040421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)Ensembl
Rnor_6.0 Ensembl1163,545,326 - 163,611,299 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081509   ⟹   ENSRNOP00000068873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1163,551,196 - 163,554,839 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098402   ⟹   ENSRNOP00000082935
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112537   ⟹   ENSRNOP00000097921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117742   ⟹   ENSRNOP00000094017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119160   ⟹   ENSRNOP00000077337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000120187   ⟹   ENSRNOP00000079335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)Ensembl
RefSeq Acc Id: NM_001400843   ⟹   NP_001387772
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,169 - 162,364,707 (-)NCBI
mRatBN7.21152,883,986 - 152,953,531 (-)NCBI
RefSeq Acc Id: XM_006229802   ⟹   XP_006229864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,881,485 - 152,960,419 (-)NCBI
Rnor_6.01163,541,071 - 163,618,576 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229804   ⟹   XP_006229866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,418 (-)NCBI
Rnor_6.01163,545,116 - 163,618,575 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229805   ⟹   XP_006229867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,418 (-)NCBI
Rnor_6.01163,545,116 - 163,618,575 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229807   ⟹   XP_006229869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,420 (-)NCBI
Rnor_6.01163,545,116 - 163,618,576 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229808   ⟹   XP_006229870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,416 (-)NCBI
Rnor_6.01163,545,116 - 163,618,575 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229809   ⟹   XP_006229871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,419 (-)NCBI
Rnor_6.01163,545,116 - 163,618,575 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229810   ⟹   XP_006229872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,418 (-)NCBI
Rnor_6.01163,545,116 - 163,618,575 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229811   ⟹   XP_006229873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,881,485 - 152,960,419 (-)NCBI
Rnor_6.01163,541,071 - 163,618,575 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229812   ⟹   XP_006229874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,299,770 - 162,364,742 (-)NCBI
mRatBN7.21152,888,587 - 152,960,419 (-)NCBI
Rnor_6.01163,548,225 - 163,618,576 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590189   ⟹   XP_017445678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,419 (-)NCBI
Rnor_6.01163,545,116 - 163,618,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039101091   ⟹   XP_038957019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,419 (-)NCBI
RefSeq Acc Id: XM_039101092   ⟹   XP_038957020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,418 (-)NCBI
RefSeq Acc Id: XM_039101094   ⟹   XP_038957022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,415 (-)NCBI
RefSeq Acc Id: XM_039101095   ⟹   XP_038957023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,416 (-)NCBI
RefSeq Acc Id: XM_039101096   ⟹   XP_038957024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,881,485 - 152,960,418 (-)NCBI
RefSeq Acc Id: XM_039101097   ⟹   XP_038957025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,881,485 - 152,960,415 (-)NCBI
RefSeq Acc Id: XM_039101098   ⟹   XP_038957026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,881,485 - 152,960,415 (-)NCBI
RefSeq Acc Id: XM_039101099   ⟹   XP_038957027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,881,485 - 152,960,414 (-)NCBI
RefSeq Acc Id: XM_063267084   ⟹   XP_063123154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267093   ⟹   XP_063123163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267101   ⟹   XP_063123171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267113   ⟹   XP_063123183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267114   ⟹   XP_063123184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267115   ⟹   XP_063123185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267121   ⟹   XP_063123191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267128   ⟹   XP_063123198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267133   ⟹   XP_063123203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267137   ⟹   XP_063123207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267141   ⟹   XP_063123211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267144   ⟹   XP_063123214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267146   ⟹   XP_063123216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267148   ⟹   XP_063123218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267155   ⟹   XP_063123225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,320,892 (-)NCBI
RefSeq Acc Id: XM_063267156   ⟹   XP_063123226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,320,890 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001387772 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229864 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229866 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229867 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229869 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229870 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229871 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229872 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229873 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229874 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445678 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957019 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957020 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957022 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957023 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957024 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957025 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957026 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957027 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123154 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123163 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123171 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123183 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123184 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123185 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123191 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123198 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123203 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123207 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123211 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123214 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123216 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123218 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123225 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123226 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000040421.5
  ENSRNOP00000077337.1
  ENSRNOP00000079335.1
  ENSRNOP00000082935.1
  ENSRNOP00000094017.1
  ENSRNOP00000097921.1
RefSeq Acc Id: XP_006229869   ⟸   XM_006229807
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZY83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229873   ⟸   XM_006229811
- Peptide Label: isoform X16
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229867   ⟸   XM_006229805
- Peptide Label: isoform X4
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229872   ⟸   XM_006229810
- Peptide Label: isoform X15
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229871   ⟸   XM_006229809
- Peptide Label: isoform X11
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229866   ⟸   XM_006229804
- Peptide Label: isoform X3
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229864   ⟸   XM_006229802
- Peptide Label: isoform X1
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229870   ⟸   XM_006229808
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AMY7 (UniProtKB/TrEMBL),   D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229874   ⟸   XM_006229812
- Peptide Label: isoform X22
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445678   ⟸   XM_017590189
- Peptide Label: isoform X6
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000040421   ⟸   ENSRNOT00000043788
RefSeq Acc Id: ENSRNOP00000068873   ⟸   ENSRNOT00000081509
RefSeq Acc Id: XP_038957024   ⟸   XM_039101096
- Peptide Label: isoform X18
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957026   ⟸   XM_039101098
- Peptide Label: isoform X34
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957025   ⟸   XM_039101097
- Peptide Label: isoform X12
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957027   ⟸   XM_039101099
- Peptide Label: isoform X25
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957019   ⟸   XM_039101091
- Peptide Label: isoform X2
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957020   ⟸   XM_039101092
- Peptide Label: isoform X5
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957023   ⟸   XM_039101095
- Peptide Label: isoform X13
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957022   ⟸   XM_039101094
- Peptide Label: isoform X10
- UniProtKB: A0A8I5YCB7 (UniProtKB/TrEMBL),   D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000094017   ⟸   ENSRNOT00000117742
RefSeq Acc Id: ENSRNOP00000097921   ⟸   ENSRNOT00000112537
RefSeq Acc Id: ENSRNOP00000077337   ⟸   ENSRNOT00000119160
RefSeq Acc Id: ENSRNOP00000082935   ⟸   ENSRNOT00000098402
RefSeq Acc Id: ENSRNOP00000079335   ⟸   ENSRNOT00000120187
RefSeq Acc Id: NP_001387772   ⟸   NM_001400843
- UniProtKB: A0A8I6ATJ6 (UniProtKB/TrEMBL),   D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123214   ⟸   XM_063267144
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063123185   ⟸   XM_063267115
- Peptide Label: isoform X21
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123218   ⟸   XM_063267148
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063123211   ⟸   XM_063267141
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063123183   ⟸   XM_063267113
- Peptide Label: isoform X19
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123207   ⟸   XM_063267137
- Peptide Label: isoform X27
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123198   ⟸   XM_063267128
- Peptide Label: isoform X24
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123216   ⟸   XM_063267146
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063123163   ⟸   XM_063267093
- Peptide Label: isoform X14
- UniProtKB: A0A8I5ZY83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123171   ⟸   XM_063267101
- Peptide Label: isoform X17
- UniProtKB: D4AC97 (UniProtKB/TrEMBL),   A0A8I5ZN84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123191   ⟸   XM_063267121
- Peptide Label: isoform X23
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123154   ⟸   XM_063267084
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZY83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123184   ⟸   XM_063267114
- Peptide Label: isoform X20
- UniProtKB: A0A8I5ZY83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123203   ⟸   XM_063267133
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063123225   ⟸   XM_063267155
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063123226   ⟸   XM_063267156
- Peptide Label: isoform X33
Protein Domains
ENT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AC97-F1-model_v2 AlphaFold D4AC97 1-1265 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310712 AgrOrtholog
BioCyc Gene G2FUF-58418 BioCyc
Ensembl Genes ENSRNOG00000015560 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043788.7 UniProtKB/TrEMBL
  ENSRNOT00000098402.1 UniProtKB/TrEMBL
  ENSRNOT00000112537.1 UniProtKB/TrEMBL
  ENSRNOT00000117742.1 UniProtKB/TrEMBL
  ENSRNOT00000119160.1 UniProtKB/TrEMBL
  ENSRNOT00000120187.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1240.40 UniProtKB/TrEMBL
InterPro EMSY UniProtKB/TrEMBL
  ENT_dom-like_sf UniProtKB/TrEMBL
  ENT_N UniProtKB/TrEMBL
NCBI Gene 361607 ENTREZGENE
PANTHER BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY UniProtKB/TrEMBL
  PTHR16500 UniProtKB/TrEMBL
Pfam ENT UniProtKB/TrEMBL
PhenoGen Emsy PhenoGen
PROSITE ENT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015560 RatGTEx
SMART ENT UniProtKB/TrEMBL
Superfamily-SCOP SSF158639 UniProtKB/TrEMBL
UniProt A0A8I5YCB7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZN84 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZY83 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AMY7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATJ6 ENTREZGENE, UniProtKB/TrEMBL
  D4AC97 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Emsy  EMSY transcriptional repressor, BRCA2 interacting  Emsy  EMSY BRCA2-interacting transcriptional repressor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-05 Emsy  EMSY BRCA2-interacting transcriptional repressor  RGD1310712  similar to EMSY protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310712  similar to EMSY protein   RGD1310712_predicted  similar to EMSY protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1310712_predicted  similar to EMSY protein (predicted)  LOC361607_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361607_predicted  similar to EMSY protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL