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Gene: Cdip1 (cell death-inducing p53 target 1) Rattus norvegicus

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Symbol:

Cdip1

Name:

cell death-inducing p53 target 1

RGD ID:

1310686

Description:

Predicted to enable zinc ion binding activity. Predicted to be involved in intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be active in cytoplasmic side of late endosome membrane; cytoplasmic side of lysosomal membrane; and nucleus. Orthologous to human CDIP1 (cell death inducing p53 target 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cell death-inducing p53-target protein 1; LITAF-like protein; LOC360480; MGC94589; RGD1310686; similar to chromosome 16 open reading frame 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDIP1 (cell death inducing p53 target 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cdip1 (cell death inducing Trp53 target 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdip1 (cell death inducing p53 target 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDIP1 (cell death inducing p53 target 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDIP1 (cell death inducing p53 target 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdip1 (cell death inducing p53 target 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDIP1 (cell death inducing p53 target 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDIP1 (cell death inducing p53 target 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdip1 (cell death inducing p53 target 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ABCC3 (ATP binding cassette subfamily C member 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CDIP1 (cell death inducing p53 target 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cdip1 (cell death inducing Trp53 target 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdip1 (cell death-inducing p53 target 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG32280	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG32280	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y40H7A.11	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Caenorhabditis elegans (roundworm):	F16F9.1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Caenorhabditis elegans (roundworm):	Y37D8A.6	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Caenorhabditis elegans (roundworm):	Y22D7AL.15	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Caenorhabditis elegans (roundworm):	Y22D7AL.15	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	C08E8.1	Alliance	DIOPT (PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	cdip1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cdip1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	11,278,213 - 11,303,415 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	11,293,827 - 11,303,415 (+)	Ensembl				GRCr8
mRatBN7.2	10	10,773,538 - 10,796,979 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	10,774,705 - 10,796,980 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	15,483,031 - 15,505,507 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	14,971,851 - 14,994,329 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	10,641,466 - 10,663,780 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	10,966,819 - 10,989,937 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	10,967,658 - 10,989,936 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	9,733,970 - 9,756,550 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	10,891,559 - 10,914,046 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	9,738,210 - 9,760,386 (+)	NCBI		Celera
RGSC_v3.1	10	10,891,558 - 10,914,045 (+)	NCBI
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

Idiopathic Generalized Epilepsy (ISO)

Kohlschutter-Tonz syndrome (ISO)

Rubinstein-Taybi syndrome (ISO)

short-rib thoracic dysplasia 9 with or without polydactyly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

actinomycin D (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (EXP)

camptothecin (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clofibrate (ISO)

clotrimazole (EXP)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

cyclosporin A (EXP,ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

glafenine (EXP)

metformin (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

N-methyl-4-phenylpyridinium (ISO)

Nutlin-3 (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propanal (ISO)

prothioconazole (ISO)

quercetin (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

tributylstannane (EXP)

triptonide (ISO)

troglitazone (ISO)

valdecoxib (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (IBA,IEA,ISO)

Cellular Component

cytoplasmic side of late endosome membrane (IBA,IEA,ISO,ISS)

cytoplasmic side of lysosomal membrane (IBA,IEA,ISO,ISS)

endosome (IEA)

late endosome membrane (IEA)

lysosomal membrane (IEA)

lysosome (IEA)

membrane (IEA)

nucleus (IBA,IEA,ISO)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:17599062	PMID:22871113	PMID:27582497

Genomics

Comparative Map Data

Cdip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	11,278,213 - 11,303,415 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	11,293,827 - 11,303,415 (+)	Ensembl				GRCr8
mRatBN7.2	10	10,773,538 - 10,796,979 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	10,774,705 - 10,796,980 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	15,483,031 - 15,505,507 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	14,971,851 - 14,994,329 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	10,641,466 - 10,663,780 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	10,966,819 - 10,989,937 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	10,967,658 - 10,989,936 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	9,733,970 - 9,756,550 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	10,891,559 - 10,914,046 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	9,738,210 - 9,760,386 (+)	NCBI		Celera
RGSC_v3.1	10	10,891,558 - 10,914,045 (+)	NCBI
Cytogenetic Map	10	q12	NCBI

CDIP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	4,510,669 - 4,538,773 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	4,510,669 - 4,538,828 (-)	Ensembl			hg38	GRCh38
GRCh37	16	4,560,670 - 4,588,774 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	4,500,677 - 4,528,817 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	4,500,741 - 4,504,857	NCBI
Celera	16	4,769,569 - 4,797,708 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	4,527,844 - 4,555,982 (-)	NCBI		HuRef
CHM1_1	16	4,560,605 - 4,588,750 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	4,540,144 - 4,568,234 (-)	NCBI		T2T-CHM13v2.0

Cdip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	4,583,325 - 4,608,156 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	4,568,212 - 4,608,156 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	4,765,461 - 4,790,292 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	4,750,348 - 4,790,292 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	4,765,461 - 4,789,935 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	4,680,689 - 4,705,163 (-)	NCBI		MGSCv36	mm8
Celera	16	5,397,339 - 5,421,813 (-)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	2.47	NCBI

Cdip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	12,895,702 - 12,913,517 (+)	Ensembl
ChiLan1.0	NW_004955442	12,895,403 - 12,913,517 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDIP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	5,041,441 - 5,069,137 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	8,831,936 - 8,859,591 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	3,437,414 - 3,464,989 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	4,604,954 - 4,633,080 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	4,604,954 - 4,632,724 (-)	Ensembl			panPan2	panpan1.1

CDIP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	36,854,124 - 36,880,231 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	36,854,141 - 36,880,230 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	38,181,578 - 38,209,366 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	37,057,001 - 37,084,791 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	37,057,064 - 37,090,602 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	36,851,429 - 36,879,215 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	36,744,329 - 36,772,120 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	37,146,212 - 37,174,010 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cdip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	106,713,625 - 106,733,441 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936530	4,556,566 - 4,562,503 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936530	4,559,062 - 4,578,896 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDIP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	37,815,710 - 37,839,009 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	37,815,259 - 37,839,266 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	38,870,158 - 38,894,129 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDIP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	4,201,578 - 4,230,583 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	4,199,922 - 4,230,533 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666068	26,457,132 - 26,486,101 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdip1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624824	2,317,562 - 2,338,983 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Cdip1
102 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	518
Count of miRNA genes:	238
Interacting mature miRNAs:	302
Transcripts:	ENSRNOT00000004999
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6154182	15990232	Rat
1576304	Schws7	Schwannoma susceptibility QTL 7		0.0115	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	4765527	19816042	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	1	24158324	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35225947	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	29497586	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
737820	Alc9	Alcohol consumption QTL 9	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	19233348	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	17245662	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat

Markers in Region

RH140533

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	10,796,208 - 10,796,352 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	10,989,167 - 10,989,310	NCBI	Rnor6.0
Rnor_5.0	10	9,755,780 - 9,755,923	UniSTS	Rnor5.0
RGSC_v3.4	10	10,913,276 - 10,913,419	UniSTS	RGSC3.4
Celera	10	9,759,616 - 9,759,759	UniSTS
RH 3.4 Map	10	129.45	UniSTS
Cytogenetic Map	10	q12	UniSTS

RH127993

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	10,796,518 - 10,796,737 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	10,989,477 - 10,989,695	NCBI	Rnor6.0
Rnor_5.0	10	9,756,090 - 9,756,308	UniSTS	Rnor5.0
RGSC_v3.4	10	10,913,586 - 10,913,804	UniSTS	RGSC3.4
Celera	10	9,759,926 - 9,760,144	UniSTS
RH 3.4 Map	10	126.33	UniSTS
Cytogenetic Map	10	q12	UniSTS

RH133204

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	10,797,160 - 10,797,354 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	10,990,119 - 10,990,312	NCBI	Rnor6.0
Rnor_5.0	10	9,756,732 - 9,756,925	UniSTS	Rnor5.0
RGSC_v3.4	10	10,914,228 - 10,914,421	UniSTS	RGSC3.4
Celera	10	9,760,568 - 9,760,761	UniSTS
Cytogenetic Map	10	q12	UniSTS

RH139573

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	10,796,208 - 10,796,401 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	10,989,167 - 10,989,359	NCBI	Rnor6.0
Rnor_5.0	10	9,755,780 - 9,755,972	UniSTS	Rnor5.0
RGSC_v3.4	10	10,913,276 - 10,913,468	UniSTS	RGSC3.4
Celera	10	9,759,616 - 9,759,808	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC085860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004999 ⟹ ENSRNOP00000004999

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	11,293,827 - 11,303,414 (+)	Ensembl
mRatBN7.2 Ensembl	10	10,774,705 - 10,796,978 (+)	Ensembl
Rnor_6.0 Ensembl	10	10,967,658 - 10,989,936 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100719 ⟹ ENSRNOP00000084999

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	11,299,881 - 11,303,415 (+)	Ensembl
mRatBN7.2 Ensembl	10	10,784,141 - 10,796,980 (+)	Ensembl

RefSeq Acc Id:

NM_001008360 ⟹ NP_001008361

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,281,144 - 11,303,415 (+)	NCBI
mRatBN7.2	10	10,774,705 - 10,796,979 (+)	NCBI
Rnor_6.0	10	10,967,658 - 10,989,937 (+)	NCBI
Rnor_5.0	10	9,733,970 - 9,756,550 (+)	NCBI
RGSC_v3.4	10	10,891,559 - 10,914,046 (+)	RGD
Celera	10	9,738,210 - 9,760,386 (+)	RGD

Sequence:

show sequence

GAGTGCTGCGAGCCCTCTGGTAGAGGGGCTCGTCTGAGCACCGGGCTGGACCCTTTCAGATTTC
TGACCCCCTGGCCTCAGGCTCCTGGATTCCGAGCCCTGCTTTCATAGGAAAAACCAGTGCGAGG
CAGTGAGACTTCAGCCTTTTGTTCATGGCACCATGAGATCCAGCCTCCTAGATCTGTCTCGGCT
GAATTACTCTCACCCGTTTCCATTCTGTGTGCACCAGAAATCTGAGATCCAGGAGTATCAACAG
CAAAGATGTCTAATGAGCCACCCCCTCCTTATCCAGGAGGTCCTACAGCCCCACTACTGGAGGA
AAAAAGTGGAGCCCCACATACCCCAGGCCGAACCTCTCCAGCTGTGATGCAGCCACCACCAGGC
ATGCCACTGCCCTCTGCTGACATTGCCCCCCCGCCCTATGAGCCGCCTGGCCATCCAGTGCCTC
AGCCTGGTTTCGTGCCCCCCCACATGAATGCAGATGGCACCTACATGCCTGCAGGTTTCTACCC
TCCTCCAGGCCCTCACCCACCTATGGGCTATTATCCACCAGGACCCTACCCACCAGGGTCCTAC
CCTGGCCCCGGGGGCCACACGGCCACAGTATTGGTCCCATCAGGGGCAGCCACCACGGTGACAG
TACTGCAGGGAGAGATCTTTGAAGGCGCCCCAGTGCAGACAGTGTGTCCTCACTGCCAGCAGGC
CATTACCACCAAGATCTCCTACGAGATAGGCCTGATGAACTTTGTGCTGGGTTTCTTCTGCTGC
TTCATGGGGTGTGACCTGGGCTGCTGCTTGATCCCCTGCCTCATCAATGACTTCAAGGATGTGA
CGCACACATGTCCCAGCTGCAAAGCCTACATCTGCACATACAAGCGCTTGTGCTAACAGAGCCA
GACTTGGACTCCCCCGCCTATCAGTCTGGCCCCATGTGCTTTGCTCCCCATGCTCAGTGGTTAT
TACTCCCCAAACCCCACTTACGGTTGGAAGTTTTGCCACTGTACCCTGGAAATCCTGTCCTCAC
CTTGCCCTTCCCTGAGCATCCGACTCTTCCAGCAAAATTCTGTTGGATTGAAGGCCAAGGGCCA
GTGGGTGGCATGGGGGTGGCACTGATCCTGTGTGTTGCTTGGACATTTGCAATTCAGAAGATAA
GCTAGAGTGGCTCTCTTACTGGGGTCCTCATTTCTCCTTTCTGTGTAAATAGACGGTTCAGGCT
GGTCCTTATTCTTCCTGGGACCAAAAGCACCCAGAGGCATCAACAGGCCCCCCAGACTAGGGCC
TACAGTGAGGATCGTGCCTGGAACCACAGTTCCTGACCTGCTGGAATGAAGTCAGGGTTTTATC
TAAAGTTAAGTGGACCCAAGCAAGACAGGGTCTTATGGTTTAAGTGGGGTTTGTTGTCTCGGGT
ACCAAGATAGGGAAAGAAATGAAGACTGCTAACCCTGGACCTCAGAACTCTCAGGTATGGAGAC
ACCCAAGAGCTGCCTGGTATAAGGCAGAGAGGATGCTGGGCTATTTAAAGCTCTGGTAACGAAG
AAGAACTTGCCCCTGTCCTCACCTAGCTTCTTTGAGTCAGTCAGTATGCAGATCTCCTTTCTGG
CCACACCTCTGTGAGCCCCTCTATTTTCTGGGGCCGGAAGGAATGAATGCCCATGAGCCTGTCC
TGTCTACTTCTGTCTCTGTGCTATGTAGGTGCAACTTCTGCCTGGTGGTTTGCTGACATGGCAG
GTCAGAAGCACCTCCTTGTAAGTTCATTGGTCTCTGGAGTAAGTGCCAGCCTTTTTGCCATAGT
TGACTTGCTTCCATATTGGAGCTCCTCAATAGGAACGAACAGCTGTGGCACCGGGGACCAGGAA
AGAAGTCACAAGTGGTGGGAGTATCCTAGGGACATGAGTCGTGCCCTGGGTGTAAGCCCAAACC
TGTCCATTTCTTGAATGGTCTGTGAATATGCCCATGTGGACGCTGTAACCTGCTGCTGTCCCTC
TCCTGGTCTCACACACTGCATGGCCTCCTATCACTGTGAACTGTGGCCTGGTCCCAGTTTGTAG
TTTCATTAAATTGGCCCTTTCACTCCCCTGCCCTGGGCCTCTGCTGTCTTGCCTGGCTTCCTTC
TTTTCTGAGAGACAGGGTGGGACTACAGGTAGTCAGTCTAGTGGCAGGCAGGAGCCTGGGCCTG
GGAAACAACACATTCAAGAACCCAATTACACCAAACCAGAATTATATATAGACCTGCCCTGGGG
GAACCGAGCTGTTCTGGGCCAGGGCATTGGTTTCTACCGTTGCATAATTAGATGTCCAGGCTTC
TGAGCCTGCAAATTGGAGCCCTGTCCTAGCTTAGTGACCTCCTAACCTATAGCTATTGCTCTTT
TGTCCTTAAAGAATACAGCACTACTGGACTAAGACCTTATATCTGAAGATGACACACTGAAGTC
TCGGCACTCAGTTCTTGGTAAAATCAATCTTCTGAACTGTGAAAGTGGTGAGCTCAAGTCTTTT
TGAGTTTCCCTGCTGTTCTACCATTTTTTTCACACAAAGACTTTTATAGGAATAGATTCCTACT
AATAAAGACATTTAACTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006245811 ⟹ XP_006245873

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,281,033 - 11,302,914 (+)	NCBI
mRatBN7.2	10	10,774,631 - 10,796,979 (+)	NCBI
Rnor_6.0	10	10,967,575 - 10,989,937 (+)	NCBI
Rnor_5.0	10	9,733,970 - 9,756,550 (+)	NCBI

Sequence:

show sequence

GAGTTGTAGGCCCCCGCCTCAGGGAATGCTGCGGGTGCGCCGAAGGACTACAAATTCCAGGGTC
CTCTCCGTGCGGGGGCGGTGAGTGCTGCGAGCCCTCTGGTAGAGGGGCTCGTCTGAGCACCGGG
CTGGACCCTTTCAGATTTCTGACCCCCTGGCCTCAGGCTCCTGGATTCCGAGCCTCCTAGATCT
GTCTCGGCTGAATTACTCTCACCCGTTTCCATTCTGTGTGCACCAGAAATCTGAGATCCAGGAG
TATCAACAGCAAAGATGTCTAATGAGCCACCCCCTCCTTATCCAGGAGGTCCTACAGCCCCACT
ACTGGAGGAAAAAAGTGGAGCCCCACATACCCCAGGCCGAACCTCTCCAGCTGTGATGCAGCCA
CCACCAGGCATGCCACTGCCCTCTGCTGACATTGCCCCCCCGCCCTATGAGCCGCCTGGCCATC
CAGTGCCTCAGCCTGGTTTCGTGCCCCCCCACATGAATGCAGATGGCACCTACATGCCTGCAGG
TTTCTACCCTCCTCCAGGCCCTCACCCACCTATGGGCTATTATCCACCAGGACCCTACCCACCA
GGGTCCTACCCTGGCCCCGGGGGCCACACGGCCACAGTATTGGTCCCATCAGGGGCAGCCACCA
CGGTGACAGTACTGCAGGGAGAGATCTTTGAAGGCGCCCCAGTGCAGACAGTGTGTCCTCACTG
CCAGCAGGCCATTACCACCAAGATCTCCTACGAGATAGGCCTGATGAACTTTGTGCTGGGTTTC
TTCTGCTGCTTCATGGGGTGTGACCTGGGCTGCTGCTTGATCCCCTGCCTCATCAATGACTTCA
AGGATGTGACGCACACATGTCCCAGCTGCAAAGCCTACATCTGCACATACAAGCGCTTGTGCTA
ACAGAGCCAGACTTGGACTCCCCCGCCTATCAGTCTGGCCCCATGTGCTTTGCTCCCCATGCTC
AGTGGTTATTACTCCCCAAACCCCACTTACGGTTGGAAGTTTTGCCACTGTACCCTGGAAATCC
TGTCCTCACCTTGCCCTTCCCTGAGCATCCGACTCTTCCAGCAAAATTCTGTTGGATTGAAGGC
CAAGGGCCAGTGGGTGGCATGGGGGTGGCACTGATCCTGTGTGTTGCTTGGACATTTGCAATTC
AGAAGATAAGCTAGAGTGGCTCTCTTACTGGGGTCCTCATTTCTCCTTTCTGTGTAAATAGACG
GTTCAGGCTGGTCCTTATTCTTCCTGGGACCAAAAGCACCCAGAGGCATCAACAGGCCCCCCAG
ACTAGGGCCTACAGTGAGGATCGTGCCTGGAACCACAGTTCCTGACCTGCTGGAATGAAGTCAG
GGTTTTATCTAAAGTTAAGTGGACCCAAGCAAGACAGGGTCTTATGGTTTAAGTGGGGTTTGTT
GTCTCGGGTACCAAGATAGGGAAAGAAATGAAGACTGCTAACCCTGGACCTCAGAACTCTCAGG
TATGGAGACACCCAAGAGCTGCCTGGTATAAGGCAGAGAGGATGCTGGGCTATTTAAAGCTCTG
GTAACGAAGAAGAACTTGCCCCTGTCCTCACCTAGCTTCTTTGAGTCAGTCAGTATGCAGATCT
CCTTTCTGGCCACACCTCTGTGAGCCCCTCTATTTTCTGGGGCCGGAAGGAATGAATGCCCATG
AGCCTGTCCTGTCTACTTCTGTCTCTGTGCTATGTAGGTGCAACTTCTGCCTGGTGGTTTGCTG
ACATGGCAGGTCAGAAGCACCTCCTTGTAAGTTCATTGGTCTCTGGAGTAAGTGCCAGCCTTTT
TGCCATAGTTGACTTGCTTCCATATTGGAGCTCCTCAATAGGAACGAACAGCTGTGGCACCGGG
GACCAGGAAAGAAGTCACAAGTGGTGGGAGTATCCTAGGGACATGAGTCGTGCCCTGGGTGTAA
GCCCAAACCTGTCCATTTCTTGAATGGTCTGTGAATATGCCCATGTGGACGCTGTAACCTGCTG
CTGTCCCTCTCCTGGTCTCACACACTGCATGGCCTCCTATCACTGTGAACTGTGGCCTGGTCCC
AGTTTGTAGTTTCATTAAATTGGCCCTTTCACTCCCCTGCCCTGGGCCTCTGCTGTCTTGCCTG
GCTTCCTTCTTTTCTGAGAGACAGGGTGGGACTACAGGTAGTCAGTCTAGTGGCAGGCAGGAGC
CTGGGCCTGGGAAACAACACATTCAAGAACCCAATTACACCAAACCAGAATTATATATAGACCT
GCCCTGGGGGAACCGAGCTGTTCTGGGCCAGGGCATTGGTTTCTACCGTTGCATAATTAGATGT
CCAGGCTTCTGAGCCTGCAAATTGGAGCCCTGTCCTAGCTTAGTGACCTCCTAACCTATAGCTA
TTGCTCTTTTGTCCTTAAAGAATACAGCACTACTGGACTAAGACCTTATATCTGAAGATGACAC
ACTGAAGTCTCGGCACTCAGTTCTTGGTAAAATCAATCTTCTGAACTGTGAAAGTGGTGAGCTC
AAGTCTTTTTGAGTTTCCCTGCTGTTCTACCATTTTTTTCACACAAAGACTTTTATAGGAATAG
ATTCCTACTAATAAAGACATTTAACTTCA

hide sequence

RefSeq Acc Id:

XM_006245812 ⟹ XP_006245874

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,281,056 - 11,302,914 (+)	NCBI
mRatBN7.2	10	10,774,631 - 10,796,979 (+)	NCBI
Rnor_6.0	10	10,967,575 - 10,989,937 (+)	NCBI
Rnor_5.0	10	9,733,970 - 9,756,550 (+)	NCBI

Sequence:

show sequence

GAGTTGTAGGCCCCCGCCTCAGGGAATGCTGCGGGTGCGCCGAAGGACTACAAATTCCAGGGTC
CTCTCCGTGCGGGGGCGGTGAGTGCTGCGAGCCCTCTGGTAGAGGGGCTCGTCTGAGCACCGGG
CTGGACCCTTTCAGATTTCTGACCCCCTGGCCTCAGGCTCCTGGATTCCGAGCCCTGCTTTCAT
AGGAAAAACCAGTGCGAGGCAGTGAGACTTCAGCCTTTTGTTCATGGCACCATGAGATCCAGAT
GCCTCAGAACTAAGTTGAAAGAAAGTACTGGAGCCTGAGTTGGATCAAGGCAGGGGCATCGACC
TGCACCAGTCTTTACCACTACACAAAGCAGCGCACACATAAAGAAAGCCTCCTAGATCTGTCTC
GGCTGAATTACTCTCACCCGTTTCCATTCTGTGTGCACCAGAAATCTGAGATCCAGGAGTATCA
ACAGCAAAGATGTCTAATGAGCCACCCCCTCCTTATCCAGGAGGTCCTACAGCCCCACTACTGG
AGGAAAAAAGTGGAGCCCCACATACCCCAGGCCGAACCTCTCCAGCTGTGATGCAGCCACCACC
AGGCATGCCACTGCCCTCTGCTGACATTGCCCCCCCGCCCTATGAGCCGCCTGGCCATCCAGTG
CCTCAGCCTGGTTTCGTGCCCCCCCACATGAATGCAGATGGCACCTACATGCCTGCAGGTTTCT
ACCCTCCTCCAGGCCCTCACCCACCTATGGGCTATTATCCACCAGGACCCTACCCACCAGGGTC
CTACCCTGGCCCCGGGGGCCACACGGCCACAGTATTGGTCCCATCAGGGGCAGCCACCACGGTG
ACAGTACTGCAGGGAGAGATCTTTGAAGGCGCCCCAGTGCAGACAGTGTGTCCTCACTGCCAGC
AGGCCATTACCACCAAGATCTCCTACGAGATAGGCCTGATGAACTTTGTGCTGGGTTTCTTCTG
CTGCTTCATGGGGTGTGACCTGGGCTGCTGCTTGATCCCCTGCCTCATCAATGACTTCAAGGAT
GTGACGCACACATGTCCCAGCTGCAAAGCCTACATCTGCACATACAAGCGCTTGTGCTAACAGA
GCCAGACTTGGACTCCCCCGCCTATCAGTCTGGCCCCATGTGCTTTGCTCCCCATGCTCAGTGG
TTATTACTCCCCAAACCCCACTTACGGTTGGAAGTTTTGCCACTGTACCCTGGAAATCCTGTCC
TCACCTTGCCCTTCCCTGAGCATCCGACTCTTCCAGCAAAATTCTGTTGGATTGAAGGCCAAGG
GCCAGTGGGTGGCATGGGGGTGGCACTGATCCTGTGTGTTGCTTGGACATTTGCAATTCAGAAG
ATAAGCTAGAGTGGCTCTCTTACTGGGGTCCTCATTTCTCCTTTCTGTGTAAATAGACGGTTCA
GGCTGGTCCTTATTCTTCCTGGGACCAAAAGCACCCAGAGGCATCAACAGGCCCCCCAGACTAG
GGCCTACAGTGAGGATCGTGCCTGGAACCACAGTTCCTGACCTGCTGGAATGAAGTCAGGGTTT
TATCTAAAGTTAAGTGGACCCAAGCAAGACAGGGTCTTATGGTTTAAGTGGGGTTTGTTGTCTC
GGGTACCAAGATAGGGAAAGAAATGAAGACTGCTAACCCTGGACCTCAGAACTCTCAGGTATGG
AGACACCCAAGAGCTGCCTGGTATAAGGCAGAGAGGATGCTGGGCTATTTAAAGCTCTGGTAAC
GAAGAAGAACTTGCCCCTGTCCTCACCTAGCTTCTTTGAGTCAGTCAGTATGCAGATCTCCTTT
CTGGCCACACCTCTGTGAGCCCCTCTATTTTCTGGGGCCGGAAGGAATGAATGCCCATGAGCCT
GTCCTGTCTACTTCTGTCTCTGTGCTATGTAGGTGCAACTTCTGCCTGGTGGTTTGCTGACATG
GCAGGTCAGAAGCACCTCCTTGTAAGTTCATTGGTCTCTGGAGTAAGTGCCAGCCTTTTTGCCA
TAGTTGACTTGCTTCCATATTGGAGCTCCTCAATAGGAACGAACAGCTGTGGCACCGGGGACCA
GGAAAGAAGTCACAAGTGGTGGGAGTATCCTAGGGACATGAGTCGTGCCCTGGGTGTAAGCCCA
AACCTGTCCATTTCTTGAATGGTCTGTGAATATGCCCATGTGGACGCTGTAACCTGCTGCTGTC
CCTCTCCTGGTCTCACACACTGCATGGCCTCCTATCACTGTGAACTGTGGCCTGGTCCCAGTTT
GTAGTTTCATTAAATTGGCCCTTTCACTCCCCTGCCCTGGGCCTCTGCTGTCTTGCCTGGCTTC
CTTCTTTTCTGAGAGACAGGGTGGGACTACAGGTAGTCAGTCTAGTGGCAGGCAGGAGCCTGGG
CCTGGGAAACAACACATTCAAGAACCCAATTACACCAAACCAGAATTATATATAGACCTGCCCT
GGGGGAACCGAGCTGTTCTGGGCCAGGGCATTGGTTTCTACCGTTGCATAATTAGATGTCCAGG
CTTCTGAGCCTGCAAATTGGAGCCCTGTCCTAGCTTAGTGACCTCCTAACCTATAGCTATTGCT
CTTTTGTCCTTAAAGAATACAGCACTACTGGACTAAGACCTTATATCTGAAGATGACACACTGA
AGTCTCGGCACTCAGTTCTTGGTAAAATCAATCTTCTGAACTGTGAAAGTGGTGAGCTCAAGTC
TTTTTGAGTTTCCCTGCTGTTCTACCATTTTTTTCACACAAAGACTTTTATAGGAATAGATTCC
TACTAATAAAGACATTTAACTTCA

hide sequence

RefSeq Acc Id:

XM_006245813 ⟹ XP_006245875

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,278,213 - 11,302,914 (+)	NCBI
mRatBN7.2	10	10,773,539 - 10,796,979 (+)	NCBI
Rnor_6.0	10	10,966,819 - 10,989,937 (+)	NCBI
Rnor_5.0	10	9,733,970 - 9,756,550 (+)	NCBI

Sequence:

show sequence

TTTCCACATGTAATGATCCAAACTTCATTGATGACCTTGGTGACTTGGATCTAGCCTGTGTTTC
CAGAGTCTTCACCTTGCTGGCCAAAATGTCTTTCAGTTCTTCTACAACAGACTCTTTACTTCAC
ACCTCACCCCACCATTGCCTTTCCTACCTTCCCTGCCCAGAGGCAACCCTATAATTCTGTTGGA
CACCATTGCTTTCCTTTGAGGTGCTGGGCATTTTGTGGCTTATTTATCGTCTGTCAGAGTGGAA
GCTGTGTGATGGCAGGGACAGCTGGTGTGGTTCCCGGCTTCGTGCACGCAAGGGCGGTAACTCT
CCCTCTACCCATGGCTGGCGGGCCTGAGGGAGCGCAAGCACTGCCATGCTCCTACTTTTCAGCC
TTTCCCCCAGCAGAAAGGCCTGGGGTACTCCCACTTGCTCGCCTCACACCCGCAACGCGCCTCG
GCTGACGTCACCCAAGCTCGTTATCTGAGGCGCGAAGCTCCGCCCTAAGCCGTGAGGCCAGGAG
CTTGGGCCTTTCTCCAAAGCCTTCCCGTTTCCTCTTGACAGCTACGGGCTGAGGCAGCCATTCC
TGCAGCAGCGCTCGGCCGGTGAAGGGCCGAACTGACGCCCTGCTTTCATAGGAAAAACCAGTGC
GAGGCAGTGAGACTTCAGCCTTTTGTTCATGGCACCATGAGATCCAGCCTCCTAGATCTGTCTC
GGCTGAATTACTCTCACCCGTTTCCATTCTGTGTGCACCAGAAATCTGAGATCCAGGAGTATCA
ACAGCAAAGATGTCTAATGAGCCACCCCCTCCTTATCCAGGAGGTCCTACAGCCCCACTACTGG
AGGAAAAAAGTGGAGCCCCACATACCCCAGGCCGAACCTCTCCAGCTGTGATGCAGCCACCACC
AGGCATGCCACTGCCCTCTGCTGACATTGCCCCCCCGCCCTATGAGCCGCCTGGCCATCCAGTG
CCTCAGCCTGGTTTCGTGCCCCCCCACATGAATGCAGATGGCACCTACATGCCTGCAGGTTTCT
ACCCTCCTCCAGGCCCTCACCCACCTATGGGCTATTATCCACCAGGACCCTACCCACCAGGGTC
CTACCCTGGCCCCGGGGGCCACACGGCCACAGTATTGGTCCCATCAGGGGCAGCCACCACGGTG
ACAGTACTGCAGGGAGAGATCTTTGAAGGCGCCCCAGTGCAGACAGTGTGTCCTCACTGCCAGC
AGGCCATTACCACCAAGATCTCCTACGAGATAGGCCTGATGAACTTTGTGCTGGGTTTCTTCTG
CTGCTTCATGGGGTGTGACCTGGGCTGCTGCTTGATCCCCTGCCTCATCAATGACTTCAAGGAT
GTGACGCACACATGTCCCAGCTGCAAAGCCTACATCTGCACATACAAGCGCTTGTGCTAACAGA
GCCAGACTTGGACTCCCCCGCCTATCAGTCTGGCCCCATGTGCTTTGCTCCCCATGCTCAGTGG
TTATTACTCCCCAAACCCCACTTACGGTTGGAAGTTTTGCCACTGTACCCTGGAAATCCTGTCC
TCACCTTGCCCTTCCCTGAGCATCCGACTCTTCCAGCAAAATTCTGTTGGATTGAAGGCCAAGG
GCCAGTGGGTGGCATGGGGGTGGCACTGATCCTGTGTGTTGCTTGGACATTTGCAATTCAGAAG
ATAAGCTAGAGTGGCTCTCTTACTGGGGTCCTCATTTCTCCTTTCTGTGTAAATAGACGGTTCA
GGCTGGTCCTTATTCTTCCTGGGACCAAAAGCACCCAGAGGCATCAACAGGCCCCCCAGACTAG
GGCCTACAGTGAGGATCGTGCCTGGAACCACAGTTCCTGACCTGCTGGAATGAAGTCAGGGTTT
TATCTAAAGTTAAGTGGACCCAAGCAAGACAGGGTCTTATGGTTTAAGTGGGGTTTGTTGTCTC
GGGTACCAAGATAGGGAAAGAAATGAAGACTGCTAACCCTGGACCTCAGAACTCTCAGGTATGG
AGACACCCAAGAGCTGCCTGGTATAAGGCAGAGAGGATGCTGGGCTATTTAAAGCTCTGGTAAC
GAAGAAGAACTTGCCCCTGTCCTCACCTAGCTTCTTTGAGTCAGTCAGTATGCAGATCTCCTTT
CTGGCCACACCTCTGTGAGCCCCTCTATTTTCTGGGGCCGGAAGGAATGAATGCCCATGAGCCT
GTCCTGTCTACTTCTGTCTCTGTGCTATGTAGGTGCAACTTCTGCCTGGTGGTTTGCTGACATG
GCAGGTCAGAAGCACCTCCTTGTAAGTTCATTGGTCTCTGGAGTAAGTGCCAGCCTTTTTGCCA
TAGTTGACTTGCTTCCATATTGGAGCTCCTCAATAGGAACGAACAGCTGTGGCACCGGGGACCA
GGAAAGAAGTCACAAGTGGTGGGAGTATCCTAGGGACATGAGTCGTGCCCTGGGTGTAAGCCCA
AACCTGTCCATTTCTTGAATGGTCTGTGAATATGCCCATGTGGACGCTGTAACCTGCTGCTGTC
CCTCTCCTGGTCTCACACACTGCATGGCCTCCTATCACTGTGAACTGTGGCCTGGTCCCAGTTT
GTAGTTTCATTAAATTGGCCCTTTCACTCCCCTGCCCTGGGCCTCTGCTGTCTTGCCTGGCTTC
CTTCTTTTCTGAGAGACAGGGTGGGACTACAGGTAGTCAGTCTAGTGGCAGGCAGGAGCCTGGG
CCTGGGAAACAACACATTCAAGAACCCAATTACACCAAACCAGAATTATATATAGACCTGCCCT
GGGGGAACCGAGCTGTTCTGGGCCAGGGCATTGGTTTCTACCGTTGCATAATTAGATGTCCAGG
CTTCTGAGCCTGCAAATTGGAGCCCTGTCCTAGCTTAGTGACCTCCTAACCTATAGCTATTGCT
CTTTTGTCCTTAAAGAATACAGCACTACTGGACTAAGACCTTATATCTGAAGATGACACACTGA
AGTCTCGGCACTCAGTTCTTGGTAAAATCAATCTTCTGAACTGTGAAAGTGGTGAGCTCAAGTC
TTTTTGAGTTTCCCTGCTGTTCTACCATTTTTTTCACACAAAGACTTTTATAGGAATAGATTCC
TACTAATAAAGACATTTAACTTCA

hide sequence

RefSeq Acc Id:

XM_006245814 ⟹ XP_006245876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,281,060 - 11,302,914 (+)	NCBI
mRatBN7.2	10	10,774,631 - 10,796,979 (+)	NCBI
Rnor_6.0	10	10,967,575 - 10,989,937 (+)	NCBI
Rnor_5.0	10	9,733,970 - 9,756,550 (+)	NCBI

Sequence:

show sequence

GAGTTGTAGGCCCCCGCCTCAGGGAATGCTGCGGGTGCGCCGAAGGACTACAAATTCCAGGGTC
CTCTCCGTGCGGGGGCGGTGAGTGCTGCGAGCCCTCTGGTAGAGGGGCTCGTCTGAGCACCGGG
CTGGACCCTTTCAGATTTCTGACCCCCTGGCCTCAGGCTCCTGGATTCCGAGATGCCTCAGAAC
TAAGTTGAAAGAAAGTACTGGAGCCTGAGTTGGATCAAGGCAGGGGCATCGACCTGCACCAGTC
TTTACCACTACACAAAGCAGCGCACACATAAAGAAAGCCTCCTAGATCTGTCTCGGCTGAATTA
CTCTCACCCGTTTCCATTCTGTGTGCACCAGAAATCTGAGATCCAGGAGTATCAACAGCAAAGA
TGTCTAATGAGCCACCCCCTCCTTATCCAGGAGGTCCTACAGCCCCACTACTGGAGGAAAAAAG
TGGAGCCCCACATACCCCAGGCCGAACCTCTCCAGCTGTGATGCAGCCACCACCAGGCATGCCA
CTGCCCTCTGCTGACATTGCCCCCCCGCCCTATGAGCCGCCTGGCCATCCAGTGCCTCAGCCTG
GTTTCGTGCCCCCCCACATGAATGCAGATGGCACCTACATGCCTGCAGGTTTCTACCCTCCTCC
AGGCCCTCACCCACCTATGGGCTATTATCCACCAGGACCCTACCCACCAGGGTCCTACCCTGGC
CCCGGGGGCCACACGGCCACAGTATTGGTCCCATCAGGGGCAGCCACCACGGTGACAGTACTGC
AGGGAGAGATCTTTGAAGGCGCCCCAGTGCAGACAGTGTGTCCTCACTGCCAGCAGGCCATTAC
CACCAAGATCTCCTACGAGATAGGCCTGATGAACTTTGTGCTGGGTTTCTTCTGCTGCTTCATG
GGGTGTGACCTGGGCTGCTGCTTGATCCCCTGCCTCATCAATGACTTCAAGGATGTGACGCACA
CATGTCCCAGCTGCAAAGCCTACATCTGCACATACAAGCGCTTGTGCTAACAGAGCCAGACTTG
GACTCCCCCGCCTATCAGTCTGGCCCCATGTGCTTTGCTCCCCATGCTCAGTGGTTATTACTCC
CCAAACCCCACTTACGGTTGGAAGTTTTGCCACTGTACCCTGGAAATCCTGTCCTCACCTTGCC
CTTCCCTGAGCATCCGACTCTTCCAGCAAAATTCTGTTGGATTGAAGGCCAAGGGCCAGTGGGT
GGCATGGGGGTGGCACTGATCCTGTGTGTTGCTTGGACATTTGCAATTCAGAAGATAAGCTAGA
GTGGCTCTCTTACTGGGGTCCTCATTTCTCCTTTCTGTGTAAATAGACGGTTCAGGCTGGTCCT
TATTCTTCCTGGGACCAAAAGCACCCAGAGGCATCAACAGGCCCCCCAGACTAGGGCCTACAGT
GAGGATCGTGCCTGGAACCACAGTTCCTGACCTGCTGGAATGAAGTCAGGGTTTTATCTAAAGT
TAAGTGGACCCAAGCAAGACAGGGTCTTATGGTTTAAGTGGGGTTTGTTGTCTCGGGTACCAAG
ATAGGGAAAGAAATGAAGACTGCTAACCCTGGACCTCAGAACTCTCAGGTATGGAGACACCCAA
GAGCTGCCTGGTATAAGGCAGAGAGGATGCTGGGCTATTTAAAGCTCTGGTAACGAAGAAGAAC
TTGCCCCTGTCCTCACCTAGCTTCTTTGAGTCAGTCAGTATGCAGATCTCCTTTCTGGCCACAC
CTCTGTGAGCCCCTCTATTTTCTGGGGCCGGAAGGAATGAATGCCCATGAGCCTGTCCTGTCTA
CTTCTGTCTCTGTGCTATGTAGGTGCAACTTCTGCCTGGTGGTTTGCTGACATGGCAGGTCAGA
AGCACCTCCTTGTAAGTTCATTGGTCTCTGGAGTAAGTGCCAGCCTTTTTGCCATAGTTGACTT
GCTTCCATATTGGAGCTCCTCAATAGGAACGAACAGCTGTGGCACCGGGGACCAGGAAAGAAGT
CACAAGTGGTGGGAGTATCCTAGGGACATGAGTCGTGCCCTGGGTGTAAGCCCAAACCTGTCCA
TTTCTTGAATGGTCTGTGAATATGCCCATGTGGACGCTGTAACCTGCTGCTGTCCCTCTCCTGG
TCTCACACACTGCATGGCCTCCTATCACTGTGAACTGTGGCCTGGTCCCAGTTTGTAGTTTCAT
TAAATTGGCCCTTTCACTCCCCTGCCCTGGGCCTCTGCTGTCTTGCCTGGCTTCCTTCTTTTCT
GAGAGACAGGGTGGGACTACAGGTAGTCAGTCTAGTGGCAGGCAGGAGCCTGGGCCTGGGAAAC
AACACATTCAAGAACCCAATTACACCAAACCAGAATTATATATAGACCTGCCCTGGGGGAACCG
AGCTGTTCTGGGCCAGGGCATTGGTTTCTACCGTTGCATAATTAGATGTCCAGGCTTCTGAGCC
TGCAAATTGGAGCCCTGTCCTAGCTTAGTGACCTCCTAACCTATAGCTATTGCTCTTTTGTCCT
TAAAGAATACAGCACTACTGGACTAAGACCTTATATCTGAAGATGACACACTGAAGTCTCGGCA
CTCAGTTCTTGGTAAAATCAATCTTCTGAACTGTGAAAGTGGTGAGCTCAAGTCTTTTTGAGTT
TCCCTGCTGTTCTACCATTTTTTTCACACAAAGACTTTTATAGGAATAGATTCCTACTAATAAA
GACATTTAACTTCA

hide sequence

RefSeq Acc Id:

XM_006245815 ⟹ XP_006245877

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,278,213 - 11,302,914 (+)	NCBI
mRatBN7.2	10	10,773,538 - 10,796,979 (+)	NCBI
Rnor_6.0	10	10,966,819 - 10,989,937 (+)	NCBI
Rnor_5.0	10	9,733,970 - 9,756,550 (+)	NCBI

Sequence:

show sequence

TTTCCACATGTAATGATCCAAACTTCATTGATGACCTTGGTGACTTGGATCTAGCCTGTGTTTC
CAGAGTCTTCACCTTGCTGGCCAAAATGTCTTTCAGTTCTTCTACAACAGACTCTTTACTTCAC
ACCTCACCCCACCATTGCCTTTCCTACCTTCCCTGCCCAGAGGCAACCCTATAATTCTGTTGGA
CACCATTGCTTTCCTTTGAGGTGCTGGGCATTTTGTGGCTTATTTATCGTCTGTCAGAGTGGAA
GCTGTGTGATGGCAGGGACAGCTGGTGTGGTTCCCGGCTTCGTGCACGCAAGGGCGGTAACTCT
CCCTCTACCCATGGCTGGCGGGCCTGAGGGAGCGCAAGCACTGCCATGCTCCTACTTTTCAGCC
TTTCCCCCAGCAGAAAGGCCTGGGGTACTCCCACTTGCTCGCCTCACACCCGCAACGCGCCTCG
GCTGACGTCACCCAAGCTCGTTATCTGAGGCGCGAAGCTCCGCCCTAAGCCGTGAGGCCAGGAG
CTTGGGCCTTTCTCCAAAGCCTTCCCGTTTCCTCTTGACAGCTACGGGCTGAGGCAGCCATTCC
TGCAGCAGCGCTCGGCCGGTGAAGGGCCGAACTGACGCCTCCTAGATCTGTCTCGGCTGAATTA
CTCTCACCCGTTTCCATTCTGTGTGCACCAGAAATCTGAGATCCAGGAGTATCAACAGCAAAGA
TGTCTAATGAGCCACCCCCTCCTTATCCAGGAGGTCCTACAGCCCCACTACTGGAGGAAAAAAG
TGGAGCCCCACATACCCCAGGCCGAACCTCTCCAGCTGTGATGCAGCCACCACCAGGCATGCCA
CTGCCCTCTGCTGACATTGCCCCCCCGCCCTATGAGCCGCCTGGCCATCCAGTGCCTCAGCCTG
GTTTCGTGCCCCCCCACATGAATGCAGATGGCACCTACATGCCTGCAGGTTTCTACCCTCCTCC
AGGCCCTCACCCACCTATGGGCTATTATCCACCAGGACCCTACCCACCAGGGTCCTACCCTGGC
CCCGGGGGCCACACGGCCACAGTATTGGTCCCATCAGGGGCAGCCACCACGGTGACAGTACTGC
AGGGAGAGATCTTTGAAGGCGCCCCAGTGCAGACAGTGTGTCCTCACTGCCAGCAGGCCATTAC
CACCAAGATCTCCTACGAGATAGGCCTGATGAACTTTGTGCTGGGTTTCTTCTGCTGCTTCATG
GGGTGTGACCTGGGCTGCTGCTTGATCCCCTGCCTCATCAATGACTTCAAGGATGTGACGCACA
CATGTCCCAGCTGCAAAGCCTACATCTGCACATACAAGCGCTTGTGCTAACAGAGCCAGACTTG
GACTCCCCCGCCTATCAGTCTGGCCCCATGTGCTTTGCTCCCCATGCTCAGTGGTTATTACTCC
CCAAACCCCACTTACGGTTGGAAGTTTTGCCACTGTACCCTGGAAATCCTGTCCTCACCTTGCC
CTTCCCTGAGCATCCGACTCTTCCAGCAAAATTCTGTTGGATTGAAGGCCAAGGGCCAGTGGGT
GGCATGGGGGTGGCACTGATCCTGTGTGTTGCTTGGACATTTGCAATTCAGAAGATAAGCTAGA
GTGGCTCTCTTACTGGGGTCCTCATTTCTCCTTTCTGTGTAAATAGACGGTTCAGGCTGGTCCT
TATTCTTCCTGGGACCAAAAGCACCCAGAGGCATCAACAGGCCCCCCAGACTAGGGCCTACAGT
GAGGATCGTGCCTGGAACCACAGTTCCTGACCTGCTGGAATGAAGTCAGGGTTTTATCTAAAGT
TAAGTGGACCCAAGCAAGACAGGGTCTTATGGTTTAAGTGGGGTTTGTTGTCTCGGGTACCAAG
ATAGGGAAAGAAATGAAGACTGCTAACCCTGGACCTCAGAACTCTCAGGTATGGAGACACCCAA
GAGCTGCCTGGTATAAGGCAGAGAGGATGCTGGGCTATTTAAAGCTCTGGTAACGAAGAAGAAC
TTGCCCCTGTCCTCACCTAGCTTCTTTGAGTCAGTCAGTATGCAGATCTCCTTTCTGGCCACAC
CTCTGTGAGCCCCTCTATTTTCTGGGGCCGGAAGGAATGAATGCCCATGAGCCTGTCCTGTCTA
CTTCTGTCTCTGTGCTATGTAGGTGCAACTTCTGCCTGGTGGTTTGCTGACATGGCAGGTCAGA
AGCACCTCCTTGTAAGTTCATTGGTCTCTGGAGTAAGTGCCAGCCTTTTTGCCATAGTTGACTT
GCTTCCATATTGGAGCTCCTCAATAGGAACGAACAGCTGTGGCACCGGGGACCAGGAAAGAAGT
CACAAGTGGTGGGAGTATCCTAGGGACATGAGTCGTGCCCTGGGTGTAAGCCCAAACCTGTCCA
TTTCTTGAATGGTCTGTGAATATGCCCATGTGGACGCTGTAACCTGCTGCTGTCCCTCTCCTGG
TCTCACACACTGCATGGCCTCCTATCACTGTGAACTGTGGCCTGGTCCCAGTTTGTAGTTTCAT
TAAATTGGCCCTTTCACTCCCCTGCCCTGGGCCTCTGCTGTCTTGCCTGGCTTCCTTCTTTTCT
GAGAGACAGGGTGGGACTACAGGTAGTCAGTCTAGTGGCAGGCAGGAGCCTGGGCCTGGGAAAC
AACACATTCAAGAACCCAATTACACCAAACCAGAATTATATATAGACCTGCCCTGGGGGAACCG
AGCTGTTCTGGGCCAGGGCATTGGTTTCTACCGTTGCATAATTAGATGTCCAGGCTTCTGAGCC
TGCAAATTGGAGCCCTGTCCTAGCTTAGTGACCTCCTAACCTATAGCTATTGCTCTTTTGTCCT
TAAAGAATACAGCACTACTGGACTAAGACCTTATATCTGAAGATGACACACTGAAGTCTCGGCA
CTCAGTTCTTGGTAAAATCAATCTTCTGAACTGTGAAAGTGGTGAGCTCAAGTCTTTTTGAGTT
TCCCTGCTGTTCTACCATTTTTTTCACACAAAGACTTTTATAGGAATAGATTCCTACTAATAAA
GACATTTAACTTCA

hide sequence

RefSeq Acc Id:

XM_006245816 ⟹ XP_006245878

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,281,075 - 11,302,914 (+)	NCBI
mRatBN7.2	10	10,774,817 - 10,796,979 (+)	NCBI
Rnor_6.0	10	10,967,761 - 10,989,937 (+)	NCBI
Rnor_5.0	10	9,733,970 - 9,756,550 (+)	NCBI

Sequence:

show sequence

GGGGCTAGGTTGGCGTGGTGGAGTCCATTCCCTCTGAAACGCTACGCAGAATCAGGGCAGTTGA
TTTCGGTGTGGCTGCAGCTGCGGGGCTGTGAGGCTGCGAGGCTGCGAGGGATAGCATTTCAGGG
CCCGAGCGACTGGGCCTGCAGACGGGATATCAGCCAGAGAAGGTCCAGCCCACTCGGCCTCCTA
GATCTGTCTCGGCTGAATTACTCTCACCCGTTTCCATTCTGTGTGCACCAGAAATCTGAGATCC
AGGAGTATCAACAGCAAAGATGTCTAATGAGCCACCCCCTCCTTATCCAGGAGGTCCTACAGCC
CCACTACTGGAGGAAAAAAGTGGAGCCCCACATACCCCAGGCCGAACCTCTCCAGCTGTGATGC
AGCCACCACCAGGCATGCCACTGCCCTCTGCTGACATTGCCCCCCCGCCCTATGAGCCGCCTGG
CCATCCAGTGCCTCAGCCTGGTTTCGTGCCCCCCCACATGAATGCAGATGGCACCTACATGCCT
GCAGGTTTCTACCCTCCTCCAGGCCCTCACCCACCTATGGGCTATTATCCACCAGGACCCTACC
CACCAGGGTCCTACCCTGGCCCCGGGGGCCACACGGCCACAGTATTGGTCCCATCAGGGGCAGC
CACCACGGTGACAGTACTGCAGGGAGAGATCTTTGAAGGCGCCCCAGTGCAGACAGTGTGTCCT
CACTGCCAGCAGGCCATTACCACCAAGATCTCCTACGAGATAGGCCTGATGAACTTTGTGCTGG
GTTTCTTCTGCTGCTTCATGGGGTGTGACCTGGGCTGCTGCTTGATCCCCTGCCTCATCAATGA
CTTCAAGGATGTGACGCACACATGTCCCAGCTGCAAAGCCTACATCTGCACATACAAGCGCTTG
TGCTAACAGAGCCAGACTTGGACTCCCCCGCCTATCAGTCTGGCCCCATGTGCTTTGCTCCCCA
TGCTCAGTGGTTATTACTCCCCAAACCCCACTTACGGTTGGAAGTTTTGCCACTGTACCCTGGA
AATCCTGTCCTCACCTTGCCCTTCCCTGAGCATCCGACTCTTCCAGCAAAATTCTGTTGGATTG
AAGGCCAAGGGCCAGTGGGTGGCATGGGGGTGGCACTGATCCTGTGTGTTGCTTGGACATTTGC
AATTCAGAAGATAAGCTAGAGTGGCTCTCTTACTGGGGTCCTCATTTCTCCTTTCTGTGTAAAT
AGACGGTTCAGGCTGGTCCTTATTCTTCCTGGGACCAAAAGCACCCAGAGGCATCAACAGGCCC
CCCAGACTAGGGCCTACAGTGAGGATCGTGCCTGGAACCACAGTTCCTGACCTGCTGGAATGAA
GTCAGGGTTTTATCTAAAGTTAAGTGGACCCAAGCAAGACAGGGTCTTATGGTTTAAGTGGGGT
TTGTTGTCTCGGGTACCAAGATAGGGAAAGAAATGAAGACTGCTAACCCTGGACCTCAGAACTC
TCAGGTATGGAGACACCCAAGAGCTGCCTGGTATAAGGCAGAGAGGATGCTGGGCTATTTAAAG
CTCTGGTAACGAAGAAGAACTTGCCCCTGTCCTCACCTAGCTTCTTTGAGTCAGTCAGTATGCA
GATCTCCTTTCTGGCCACACCTCTGTGAGCCCCTCTATTTTCTGGGGCCGGAAGGAATGAATGC
CCATGAGCCTGTCCTGTCTACTTCTGTCTCTGTGCTATGTAGGTGCAACTTCTGCCTGGTGGTT
TGCTGACATGGCAGGTCAGAAGCACCTCCTTGTAAGTTCATTGGTCTCTGGAGTAAGTGCCAGC
CTTTTTGCCATAGTTGACTTGCTTCCATATTGGAGCTCCTCAATAGGAACGAACAGCTGTGGCA
CCGGGGACCAGGAAAGAAGTCACAAGTGGTGGGAGTATCCTAGGGACATGAGTCGTGCCCTGGG
TGTAAGCCCAAACCTGTCCATTTCTTGAATGGTCTGTGAATATGCCCATGTGGACGCTGTAACC
TGCTGCTGTCCCTCTCCTGGTCTCACACACTGCATGGCCTCCTATCACTGTGAACTGTGGCCTG
GTCCCAGTTTGTAGTTTCATTAAATTGGCCCTTTCACTCCCCTGCCCTGGGCCTCTGCTGTCTT
GCCTGGCTTCCTTCTTTTCTGAGAGACAGGGTGGGACTACAGGTAGTCAGTCTAGTGGCAGGCA
GGAGCCTGGGCCTGGGAAACAACACATTCAAGAACCCAATTACACCAAACCAGAATTATATATA
GACCTGCCCTGGGGGAACCGAGCTGTTCTGGGCCAGGGCATTGGTTTCTACCGTTGCATAATTA
GATGTCCAGGCTTCTGAGCCTGCAAATTGGAGCCCTGTCCTAGCTTAGTGACCTCCTAACCTAT
AGCTATTGCTCTTTTGTCCTTAAAGAATACAGCACTACTGGACTAAGACCTTATATCTGAAGAT
GACACACTGAAGTCTCGGCACTCAGTTCTTGGTAAAATCAATCTTCTGAACTGTGAAAGTGGTG
AGCTCAAGTCTTTTTGAGTTTCCCTGCTGTTCTACCATTTTTTTCACACAAAGACTTTTATAGG
AATAGATTCCTACTAATAAAGACATTTAACTTCA

hide sequence

RefSeq Acc Id:

XM_039086264 ⟹ XP_038942192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,278,213 - 11,302,914 (+)	NCBI
mRatBN7.2	10	10,773,539 - 10,796,979 (+)	NCBI

RefSeq Acc Id:

XM_039086265 ⟹ XP_038942193

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,281,075 - 11,302,914 (+)	NCBI
mRatBN7.2	10	10,774,817 - 10,796,979 (+)	NCBI

RefSeq Acc Id:

XM_039086266 ⟹ XP_038942194

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,288,660 - 11,302,914 (+)	NCBI
mRatBN7.2	10	10,780,894 - 10,796,979 (+)	NCBI

RefSeq Acc Id:

XM_063269294 ⟹ XP_063125364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,278,213 - 11,302,914 (+)	NCBI

RefSeq Acc Id:

XM_063269295 ⟹ XP_063125365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,281,075 - 11,302,914 (+)	NCBI

RefSeq Acc Id:

XM_063269296 ⟹ XP_063125366

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,281,074 - 11,302,914 (+)	NCBI

RefSeq Acc Id:

XM_063269297 ⟹ XP_063125367

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,281,074 - 11,302,914 (+)	NCBI

RefSeq Acc Id:

XM_063269298 ⟹ XP_063125368

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,281,229 - 11,302,914 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001008361	(Get FASTA)	NCBI Sequence Viewer
	XP_006245873	(Get FASTA)	NCBI Sequence Viewer
	XP_006245874	(Get FASTA)	NCBI Sequence Viewer
	XP_006245875	(Get FASTA)	NCBI Sequence Viewer
	XP_006245876	(Get FASTA)	NCBI Sequence Viewer
	XP_006245877	(Get FASTA)	NCBI Sequence Viewer
	XP_006245878	(Get FASTA)	NCBI Sequence Viewer
	XP_038942192	(Get FASTA)	NCBI Sequence Viewer
	XP_038942193	(Get FASTA)	NCBI Sequence Viewer
	XP_038942194	(Get FASTA)	NCBI Sequence Viewer
	XP_063125364	(Get FASTA)	NCBI Sequence Viewer
	XP_063125365	(Get FASTA)	NCBI Sequence Viewer
	XP_063125366	(Get FASTA)	NCBI Sequence Viewer
	XP_063125367	(Get FASTA)	NCBI Sequence Viewer
	XP_063125368	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85860	(Get FASTA)	NCBI Sequence Viewer
	EDL96283	(Get FASTA)	NCBI Sequence Viewer
	EDL96284	(Get FASTA)	NCBI Sequence Viewer
	EDL96285	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004999
	ENSRNOP00000004999.3
	ENSRNOP00000084999
GenBank Protein	Q5U2U6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001008361 ⟸ NM_001008360

- UniProtKB:

Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSNEPPPPYPGGPTAPLLEEKSGAPHTPGRTSPAVMQPPPGMPLPSADIAPPPYEPPGHPVPQP
GFVPPHMNADGTYMPAGFYPPPGPHPPMGYYPPGPYPPGSYPGPGGHTATVLVPSGAATTVTVL
QGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTH
TCPSCKAYICTYKRLC

hide sequence

RefSeq Acc Id:	XP_006245875 ⟸ XM_006245813
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNEPPPPYPGGPTAPLLEEKSGAPHTPGRTSPAVMQPPPGMPLPSADIAPPPYEPPGHPVPQP GFVPPHMNADGTYMPAGFYPPPGPHPPMGYYPPGPYPPGSYPGPGGHTATVLVPSGAATTVTVL QGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTH TCPSCKAYICTYKRLC hide sequence

RefSeq Acc Id:	XP_006245877 ⟸ XM_006245815
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNEPPPPYPGGPTAPLLEEKSGAPHTPGRTSPAVMQPPPGMPLPSADIAPPPYEPPGHPVPQP GFVPPHMNADGTYMPAGFYPPPGPHPPMGYYPPGPYPPGSYPGPGGHTATVLVPSGAATTVTVL QGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTH TCPSCKAYICTYKRLC hide sequence

RefSeq Acc Id:	XP_006245874 ⟸ XM_006245812
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNEPPPPYPGGPTAPLLEEKSGAPHTPGRTSPAVMQPPPGMPLPSADIAPPPYEPPGHPVPQP GFVPPHMNADGTYMPAGFYPPPGPHPPMGYYPPGPYPPGSYPGPGGHTATVLVPSGAATTVTVL QGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTH TCPSCKAYICTYKRLC hide sequence

RefSeq Acc Id:	XP_006245876 ⟸ XM_006245814
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNEPPPPYPGGPTAPLLEEKSGAPHTPGRTSPAVMQPPPGMPLPSADIAPPPYEPPGHPVPQP GFVPPHMNADGTYMPAGFYPPPGPHPPMGYYPPGPYPPGSYPGPGGHTATVLVPSGAATTVTVL QGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTH TCPSCKAYICTYKRLC hide sequence

RefSeq Acc Id:	XP_006245873 ⟸ XM_006245811
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNEPPPPYPGGPTAPLLEEKSGAPHTPGRTSPAVMQPPPGMPLPSADIAPPPYEPPGHPVPQP GFVPPHMNADGTYMPAGFYPPPGPHPPMGYYPPGPYPPGSYPGPGGHTATVLVPSGAATTVTVL QGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTH TCPSCKAYICTYKRLC hide sequence

RefSeq Acc Id:	XP_006245878 ⟸ XM_006245816
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNEPPPPYPGGPTAPLLEEKSGAPHTPGRTSPAVMQPPPGMPLPSADIAPPPYEPPGHPVPQP GFVPPHMNADGTYMPAGFYPPPGPHPPMGYYPPGPYPPGSYPGPGGHTATVLVPSGAATTVTVL QGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTH TCPSCKAYICTYKRLC hide sequence

Ensembl Acc Id:

ENSRNOP00000004999 ⟸ ENSRNOT00000004999

RefSeq Acc Id:	XP_038942192 ⟸ XM_039086264
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942193 ⟸ XM_039086265
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942194 ⟸ XM_039086266
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000084999 ⟸ ENSRNOT00000100719

RefSeq Acc Id:	XP_063125364 ⟸ XM_063269294
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125366 ⟸ XM_063269296
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125367 ⟸ XM_063269297
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125365 ⟸ XM_063269295
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125368 ⟸ XM_063269298
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2U6 (UniProtKB/Swiss-Prot), A6K4R2 (UniProtKB/TrEMBL), A0A8I6A313 (UniProtKB/TrEMBL)

Protein Domains

LITAF

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U2U6-F1-model_v2	AlphaFold	Q5U2U6	1-208	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696971

Promoter ID:

EPDNEW_R7496

Type:

initiation region

Name:

Cdip1_1

Description:

cell death-inducing p53 target 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	10,967,655 - 10,967,715	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310686	AgrOrtholog
BioCyc Gene	G2FUF-26041	BioCyc
Ensembl Genes	ENSRNOG00000003328	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000004999	ENTREZGENE
	ENSRNOT00000004999.5	UniProtKB/Swiss-Prot
	ENSRNOT00000100719	ENTREZGENE
IMAGE_CLONE	IMAGE:7190340	IMAGE-MGC_LOAD
InterPro	LITAF	UniProtKB/Swiss-Prot
	LITAF_fam	UniProtKB/Swiss-Prot
KEGG Report	rno:360480	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94589	IMAGE-MGC_LOAD
NCBI Gene	360480	ENTREZGENE
PANTHER	CELL DEATH-INDUCING P53-TARGET PROTEIN 1	UniProtKB/Swiss-Prot
	PTHR23292	UniProtKB/Swiss-Prot
Pfam	zf-LITAF-like	UniProtKB/Swiss-Prot
PhenoGen	Cdip1	PhenoGen
PROSITE	LITAF	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003328	RatGTEx
SMART	LITAF	UniProtKB/Swiss-Prot
UniProt	A0A8I6A313	ENTREZGENE, UniProtKB/TrEMBL
	A6K4R2	ENTREZGENE, UniProtKB/TrEMBL
	CDIP1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-11-21	Cdip1	cell death-inducing p53 target 1	RGD1310686	similar to chromosome 16 open reading frame 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1310686	similar to chromosome 16 open reading frame 5	RGD1310686_predicted	similar to chromosome 16 open reading frame 5 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1310686_predicted	similar to chromosome 16 open reading frame 5 (predicted)	LOC360480_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360480_predicted	similar to chromosome 16 open reading frame 5 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar