Nol4 (nucleolar protein 4) - Rat Genome Database

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Gene: Nol4 (nucleolar protein 4) Rattus norvegicus
Analyze
Symbol: Nol4
Name: nucleolar protein 4
RGD ID: 1310663
Description: Predicted to be located in nucleolus. Orthologous to human NOL4 (nucleolar protein 4); INTERACTS WITH 1,3-dinitrobenzene; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC307553
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21813,932,499 - 14,294,873 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1813,932,510 - 14,296,286 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1814,118,579 - 14,480,839 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01814,906,228 - 15,268,504 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01814,175,243 - 14,543,815 (-)NCBIRnor_WKY
Rnor_6.01813,658,260 - 14,016,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1813,658,271 - 14,016,713 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01813,441,528 - 13,801,153 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41814,312,224 - 14,718,842 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11814,340,233 - 14,744,196 (-)NCBI
Celera1813,911,298 - 14,272,965 (-)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Nol4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21813,932,499 - 14,294,873 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1813,932,510 - 14,296,286 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1814,118,579 - 14,480,839 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01814,906,228 - 15,268,504 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01814,175,243 - 14,543,815 (-)NCBIRnor_WKY
Rnor_6.01813,658,260 - 14,016,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1813,658,271 - 14,016,713 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01813,441,528 - 13,801,153 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41814,312,224 - 14,718,842 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11814,340,233 - 14,744,196 (-)NCBI
Celera1813,911,298 - 14,272,965 (-)NCBICelera
Cytogenetic Map18p12NCBI
NOL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381833,851,100 - 34,224,913 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1833,851,100 - 34,224,952 (-)EnsemblGRCh38hg38GRCh38
GRCh371831,431,064 - 31,804,877 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361829,685,062 - 30,057,444 (-)NCBINCBI36Build 36hg18NCBI36
Build 341829,686,409 - 30,057,513NCBI
Celera1828,239,387 - 28,611,397 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
HuRef1828,290,445 - 28,662,648 (-)NCBIHuRef
CHM1_11831,358,224 - 31,730,679 (-)NCBICHM1_1
T2T-CHM13v2.01834,042,633 - 34,416,765 (-)NCBIT2T-CHM13v2.0
Nol4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391822,826,209 - 23,174,926 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1822,826,238 - 23,174,710 (-)EnsemblGRCm39 Ensembl
GRCm381822,693,152 - 23,042,640 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1822,693,181 - 23,041,653 (-)EnsemblGRCm38mm10GRCm38
MGSCv371822,851,656 - 23,200,154 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361822,836,416 - 23,181,666 (-)NCBIMGSCv36mm8
Celera1823,176,162 - 23,536,179 (-)NCBICelera
Cytogenetic Map18A2NCBI
Nol4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540220,780,251 - 21,106,508 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540220,781,485 - 21,106,508 (-)NCBIChiLan1.0ChiLan1.0
NOL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11830,646,179 - 31,025,952 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1830,646,179 - 31,026,620 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01827,054,678 - 27,435,085 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
NOL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1755,617,119 - 56,007,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl755,618,123 - 56,006,041 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha754,919,320 - 55,440,480 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0755,454,410 - 55,977,017 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl755,586,330 - 55,976,997 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1755,142,088 - 55,663,223 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0755,162,627 - 55,684,834 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0755,459,157 - 55,980,811 (+)NCBIUU_Cfam_GSD_1.0
Nol4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494451,340,391 - 51,651,163 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493651710,668,250 - 10,978,766 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6117,631,227 - 118,087,992 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16117,631,631 - 118,088,026 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26109,982,552 - 110,275,172 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NOL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11846,519,566 - 46,901,694 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1846,521,206 - 46,901,764 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605021,021,668 - 21,420,272 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nol4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247798,359,584 - 8,685,781 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247798,359,844 - 8,687,368 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nol4
2031 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:67
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000041125
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat

Markers in Region
D18Rat75  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01813,553,288 - 13,553,458NCBIRnor5.0
Rnor_5.01813,553,288 - 13,553,562NCBIRnor5.0
RGSC_v3.41814,450,293 - 14,450,566RGDRGSC3.4
RGSC_v3.41814,450,293 - 14,450,462RGDRGSC3.4
RGSC_v3.11814,476,939 - 14,477,212RGD
Celera1814,023,452 - 14,023,701UniSTS
RH 3.4 Map18159.6UniSTS
RH 3.4 Map18159.6RGD
RH 2.0 Map18725.8RGD
SHRSP x BN Map185.85RGD
FHH x ACI Map1810.5499RGD
Cytogenetic Map18p12UniSTS
D18Got17  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,200,465 - 14,200,632 (+)MAPPERmRatBN7.2
Rnor_6.01813,925,372 - 13,925,538NCBIRnor6.0
Rnor_5.01813,708,383 - 13,708,549UniSTSRnor5.0
RGSC_v3.41814,619,985 - 14,620,152RGDRGSC3.4
RGSC_v3.41814,619,986 - 14,620,152UniSTSRGSC3.4
RGSC_v3.11814,646,632 - 14,646,798RGD
Celera1814,179,060 - 14,179,226UniSTS
RH 3.4 Map18154.3UniSTS
RH 3.4 Map18154.3RGD
RH 2.0 Map18735.1RGD
Cytogenetic Map18p12UniSTS
BB384708  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21813,932,804 - 13,932,905 (+)MAPPERmRatBN7.2
Rnor_6.01813,658,566 - 13,658,666NCBIRnor6.0
Rnor_5.01813,441,831 - 13,441,931UniSTSRnor5.0
RGSC_v3.41814,312,519 - 14,312,619UniSTSRGSC3.4
Celera1813,911,593 - 13,911,693UniSTS
Cytogenetic Map18p12UniSTS
RH142458  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,295,474 - 14,295,729 (+)MAPPERmRatBN7.2
Rnor_6.01814,017,334 - 14,017,588NCBIRnor6.0
Rnor_5.01813,801,754 - 13,802,008UniSTSRnor5.0
RGSC_v3.41814,719,579 - 14,719,833UniSTSRGSC3.4
Celera1814,274,119 - 14,274,373UniSTS
RH 3.4 Map18150.7UniSTS
Cytogenetic Map18p12UniSTS
AU047300  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,289,235 - 14,289,432 (+)MAPPERmRatBN7.2
Rnor_6.01814,011,089 - 14,011,287NCBIRnor6.0
Rnor_5.01813,795,509 - 13,795,707UniSTSRnor5.0
RGSC_v3.41814,713,218 - 14,713,416UniSTSRGSC3.4
Celera1814,267,341 - 14,267,539UniSTS
Cytogenetic Map18p12UniSTS
RH140952  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,179,275 - 14,179,492 (+)MAPPERmRatBN7.2
Rnor_6.01813,903,992 - 13,904,208NCBIRnor6.0
Rnor_5.01813,686,964 - 13,687,180UniSTSRnor5.0
RGSC_v3.41814,598,173 - 14,598,389UniSTSRGSC3.4
Celera1814,157,870 - 14,158,086UniSTS
RH 3.4 Map18167.4UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map18p12UniSTS
BF390037  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,141,502 - 14,141,657 (+)MAPPERmRatBN7.2
Rnor_6.01813,866,869 - 13,867,023NCBIRnor6.0
Rnor_5.01813,649,841 - 13,649,995UniSTSRnor5.0
RGSC_v3.41814,561,511 - 14,561,665UniSTSRGSC3.4
Celera1814,120,595 - 14,120,749UniSTS
RH 3.4 Map18154.4UniSTS
Cytogenetic Map18p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 64 4
Low 7 8 19 22
Below cutoff 2 6 8 7 1 7 3 3 2 9 14 1 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000041125   ⟹   ENSRNOP00000038969
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1813,932,510 - 14,294,858 (-)Ensembl
Rnor_6.0 Ensembl1813,658,271 - 14,016,713 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103441   ⟹   ENSRNOP00000090479
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1813,932,510 - 14,296,286 (-)Ensembl
RefSeq Acc Id: NM_001107401   ⟹   NP_001100871
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,510 - 14,294,858 (-)NCBI
Rnor_6.01813,658,271 - 14,016,713 (-)NCBI
Rnor_5.01813,441,528 - 13,801,153 (-)NCBI
RGSC_v3.41814,312,224 - 14,718,842 (-)RGD
Celera1813,911,298 - 14,272,965 (-)RGD
Sequence:
RefSeq Acc Id: XM_006254453   ⟹   XP_006254515
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,294,873 (-)NCBI
Rnor_6.01813,658,260 - 14,016,699 (-)NCBI
Rnor_5.01813,441,528 - 13,801,153 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600973   ⟹   XP_017456462
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,292,941 (-)NCBI
Rnor_6.01813,658,260 - 14,013,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600974   ⟹   XP_017456463
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,198,915 (-)NCBI
Rnor_6.01813,658,260 - 13,923,807 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600975   ⟹   XP_017456464
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,066,313 (-)NCBI
Rnor_6.01813,658,260 - 13,792,648 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096914   ⟹   XP_038952842
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,294,873 (-)NCBI
RefSeq Acc Id: XM_039096915   ⟹   XP_038952843
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,228,180 (-)NCBI
RefSeq Acc Id: XM_039096916   ⟹   XP_038952844
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,015,535 - 14,294,873 (-)NCBI
RefSeq Acc Id: XM_039096917   ⟹   XP_038952845
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,066,308 (-)NCBI
RefSeq Acc Id: XM_039096918   ⟹   XP_038952846
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,294,873 (-)NCBI
RefSeq Acc Id: XR_005496044
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,014,587 - 14,294,873 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100871   ⟸   NM_001107401
- UniProtKB: D4A3P4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254515   ⟸   XM_006254453
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456462   ⟸   XM_017600973
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017456463   ⟸   XM_017600974
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017456464   ⟸   XM_017600975
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000038969   ⟸   ENSRNOT00000041125
RefSeq Acc Id: XP_038952842   ⟸   XM_039096914
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038952846   ⟸   XM_039096918
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038952843   ⟸   XM_039096915
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038952845   ⟸   XM_039096917
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038952844   ⟸   XM_039096916
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000090479   ⟸   ENSRNOT00000103441

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3P4-F1-model_v2 AlphaFold D4A3P4 1-574 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310663 AgrOrtholog
BioCyc Gene G2FUF-8188 BioCyc
Ensembl Genes ENSRNOG00000014775 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000038969 ENTREZGENE
  ENSRNOP00000038969.4 UniProtKB/TrEMBL
  ENSRNOP00000090479 ENTREZGENE
  ENSRNOP00000090479.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041125 ENTREZGENE
  ENSRNOT00000041125.5 UniProtKB/TrEMBL
  ENSRNOT00000103441 ENTREZGENE
  ENSRNOT00000103441.1 UniProtKB/TrEMBL
InterPro NOL4 UniProtKB/TrEMBL
  NOL4/NOL4L UniProtKB/TrEMBL
KEGG Report rno:307553 UniProtKB/TrEMBL
NCBI Gene 307553 ENTREZGENE
PANTHER PTHR12449 UniProtKB/TrEMBL
  PTHR12449:SF17 UniProtKB/TrEMBL
PhenoGen Nol4 PhenoGen
UniProt A0A8I6ADW2_RAT UniProtKB/TrEMBL
  D4A3P4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nol4  nucleolar protein 4   Nol4_predicted  nucleolar protein 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nol4_predicted  nucleolar protein 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED