Ccna1 (cyclin A1) - Rat Genome Database

Name: Ccna1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Ccna1 (cyclin A1) Rattus norvegicus

Analyze

Symbol:

Ccna1

Name:

cyclin A1

RGD ID:

1310639

Description:

Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be located in microtubule cytoskeleton. Predicted to be part of cyclin A1-CDK2 complex and cyclin A2-CDK2 complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human CCNA1 (cyclin A1); PARTICIPATES IN G1/S transition pathway; acute myeloid leukemia pathway; cell cycle pathway, mitotic; INTERACTS WITH bisphenol A; chromium(6+); cypermethrin.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cyclin-A1; LOC295052

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCNA1 (cyclin A1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ccna1 (cyclin A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccna1 (cyclin A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCNA1 (cyclin A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCNA1 (cyclin A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccna1 (cyclin A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCNA1 (cyclin A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCNA1 (cyclin A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccna1 (cyclin A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CCNA1 (cyclin A1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccna1 (cyclin A1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccna1 (cyclin A1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CycA	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cya-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CLN3	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	CLN2	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	CLN1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ccna1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	139,231,738 - 139,278,066 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	139,201,074 - 139,243,157 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	145,808,039 - 145,817,882 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	143,919,479 - 143,929,320 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	138,551,905 - 138,561,746 (-)	NCBI	Rnor_WKY
Rnor_6.0	2	144,456,689 - 144,503,570 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	144,458,153 - 144,467,912 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	163,874,794 - 163,886,211 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	144,275,211 - 144,285,196 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	144,225,173 - 144,235,159 (-)	NCBI
Celera	2	133,716,972 - 133,726,933 (-)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myeloid leukemia (ISO)

genetic disease (ISO)

head and neck squamous cell carcinoma (ISO)

hepatocellular carcinoma (ISO)

papillomavirus infectious disease (ISO)

prostate cancer (ISO)

Testicular Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(+)-taxifolin (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,10-heptadecafluoro-1-decanol (ISO)

5-aza-2'-deoxycytidine (ISO)

5-azacytidine (ISO)

5-fluorouracil (ISO)

8-Br-cAMP (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (ISO)

atropine (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylparaben (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cadmium sulfate (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

chromium(6+) (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

cypermethrin (EXP,ISO)

decabromodiphenyl ether (EXP)

diarsenic trioxide (ISO)

diazinon (ISO)

diethyl maleate (ISO)

diethylstilbestrol (EXP)

dimethylarsinous acid (ISO)

dinophysistoxin 2 (ISO)

dioxygen (ISO)

doxorubicin (ISO)

ethanol (EXP)

flavanones (ISO)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

harmine (ISO)

heptanal (ISO)

hexanal (ISO)

homocysteine (ISO)

hydrogen chloride (ISO)

hydrogen peroxide (ISO)

hydroquinone (ISO)

L-ascorbic acid (EXP)

lead(0) (ISO)

lead(2+) (ISO)

lead(II) chloride (ISO)

lidocaine (ISO)

lipopolysaccharide (ISO)

lithium atom (EXP)

lithium chloride (ISO)

lithium hydride (EXP)

manganese atom (EXP)

manganese(0) (EXP)

manganese(II) chloride (EXP)

methamphetamine (EXP)

methoxychlor (ISO)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

N-acetyl-L-cysteine (ISO)

N-methyl-N'-nitro-N-nitrosoguanidine (ISO)

nickel atom (ISO)

nonanal (ISO)

octanal (ISO)

okadaic acid (ISO)

ouabain (ISO)

ozone (ISO)

paracetamol (ISO)

parathion (ISO)

PCB138 (ISO)

pentanal (ISO)

pioglitazone (ISO)

poly(propylene imine) macromolecule (ISO)

potassium dichromate (EXP)

progesterone (ISO)

propanal (ISO)

propylparaben (ISO)

quercetin (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

Triptolide (ISO)

tropan-3alpha-yl 3-hydroxy-2-phenylpropanoate (ISO)

Tryptanthrine (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (ISO)

XL147 (ISO)

zearalenone (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

mitotic cell cycle phase transition (IBA)

regulation of cyclin-dependent protein serine/threonine kinase activity (IBA)

response to organic substance (IEA)

Cellular Component

cyclin A1-CDK2 complex (ISO)

cyclin A2-CDK2 complex (IBA)

cytoplasm (IBA)

microtubule cytoskeleton (IEA,ISO)

nucleus (IBA,IEA)

Molecular Function

cyclin-dependent protein serine/threonine kinase regulator activity (IBA)

protein binding (ISO)

protein kinase binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

acute myeloid leukemia pathway (IEA)

cell cycle pathway, mitotic (IEA)

G1/S transition pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Expression patterns of mitotic and meiotic cell cycle regulators in testicular cancer and development.	Diederichs S, etal., Int J Cancer. 2005 Aug 20;116(2):207-17.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Cyclin A is a c-Jun target gene and is necessary for c-Jun-induced anchorage-independent growth in RAT1a cells.	Katabami M, etal., J Biol Chem. 2005 Apr 29;280(17):16728-38. Epub 2005 Feb 28.
5.	Mammalian cyclin-dependent kinases.	Malumbres M and Barbacid M, Trends Biochem Sci. 2005 Nov;30(11):630-41. Epub 2005 Oct 19.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Comprehensive gene review and curation	RGD comprehensive gene curation
12.	The Pezcoller lecture: cancer cell cycles revisited.	Sherr CJ Cancer Res. 2000 Jul 15;60(14):3689-95.
13.	Multiple cellular mechanisms related to cyclin A1 in prostate cancer invasion and metastasis.	Wegiel B, etal., J Natl Cancer Inst. 2008 Jul 16;100(14):1022-36. Epub 2008 Jul 8.
14.	Cyclin A1 expression in leukemia and normal hematopoietic cells.	Yang R, etal., Blood. 1999 Mar 15;93(6):2067-74.

Additional References at PubMed

PMID:7739547	PMID:9344597	PMID:11340163	PMID:12477932	PMID:14985333	PMID:18278459	PMID:21764057	PMID:22180637

Genomics

Comparative Map Data

Ccna1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	139,231,738 - 139,278,066 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	139,201,074 - 139,243,157 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	145,808,039 - 145,817,882 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	143,919,479 - 143,929,320 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	138,551,905 - 138,561,746 (-)	NCBI	Rnor_WKY
Rnor_6.0	2	144,456,689 - 144,503,570 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	144,458,153 - 144,467,912 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	163,874,794 - 163,886,211 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	144,275,211 - 144,285,196 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	144,225,173 - 144,235,159 (-)	NCBI
Celera	2	133,716,972 - 133,726,933 (-)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

CCNA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	36,431,517 - 36,442,870 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	13	36,431,520 - 36,442,870 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	37,006,092 - 37,017,007 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	35,904,633 - 35,915,008 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	35,904,632 - 35,915,008	NCBI
Celera	13	18,073,175 - 18,084,229 (+)	NCBI		Celera
Cytogenetic Map	13	q13.3	NCBI
HuRef	13	17,817,953 - 17,828,979 (+)	NCBI		HuRef
CHM1_1	13	36,973,445 - 36,984,499 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	35,651,206 - 35,662,375 (+)	NCBI		T2T-CHM13v2.0

Ccna1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	54,952,890 - 54,965,055 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	54,952,890 - 54,962,922 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	55,045,469 - 55,057,634 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	55,045,469 - 55,055,501 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	54,849,391 - 54,858,977 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	55,133,404 - 55,142,984 (-)	NCBI		MGSCv36	mm8
Celera	3	54,763,020 - 54,772,599 (-)	NCBI		Celera
Cytogenetic Map	3	C	NCBI

Ccna1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	9,658,015 - 9,668,087 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	9,658,301 - 9,668,659 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCNA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	13	27,065,796 - 27,082,221 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	17,649,064 - 17,660,550 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	36,080,331 - 36,092,078 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	36,080,331 - 36,092,078 (+)	Ensembl	panpan1.1		panPan2

CCNA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	4,189,457 - 4,198,170 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	4,189,457 - 4,198,373 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	4,219,718 - 4,228,956 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	4,288,085 - 4,297,327 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	4,281,774 - 4,296,521 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	4,195,452 - 4,204,690 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	4,191,619 - 4,200,848 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	4,255,371 - 4,264,612 (-)	NCBI		UU_Cfam_GSD_1.0

Ccna1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	165,363,959 - 165,379,007 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	30,573,812 - 30,586,559 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936472	30,574,957 - 30,586,596 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCNA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	12,396,301 - 12,405,350 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	12,396,149 - 12,405,357 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	12,355,480 - 12,364,742 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCNA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	14,979,775 - 14,992,609 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	14,982,392 - 14,993,562 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	29,300,504 - 29,312,984 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccna1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	939,823 - 950,833 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624776	941,107 - 951,256 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ccna1
305 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	23
Count of miRNA genes:	23
Interacting mature miRNAs:	23
Transcripts:	ENSRNOT00000040002
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43154682	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43162366	148478373	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	59324377	141596857	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	72532993	157142209	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	76539322	150540526	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	78665616	143657569	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	102803808	147803808	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	104559726	149559726	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	112103657	148076632	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1354594	Despr10	Despair related QTL 10		0.00000249	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	114654253	159654253	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	143657569	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	143657569	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	185876470	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
5135226	Leukc2	Leukocyte quantity QTL 2			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	2	118111229	149559726	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	118111229	157142209	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	118189491	163189491	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	127447387	143657569	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	129164097	152195315	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	129540907	174540907	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
12879830	Bw178	Body weight QTL 178		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	2	137219876	142323610	Rat
12879831	Cm82	Cardiac mass QTL 82		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	137219876	142323610	Rat
12879832	Cm83	Cardiac mass QTL 83		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	137219876	142323610	Rat
12879833	Cm84	Cardiac mass QTL 84		0.001	heart right ventricle mass (VT:0007033)	heart weight to body weight ratio (CMO:0000074)	2	137219876	142323610	Rat
12879834	Am1	Aortic mass QTL 1		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	137219876	142323610	Rat
12879835	Kidm60	Kidney mass QTL 60		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	137219876	142323610	Rat
1549841	Bp256	Blood pressure QTL 256		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	137219876	142323610	Rat

Markers in Region

AA964510

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	139,233,313 - 139,234,987 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	144,458,263 - 144,459,936	NCBI	Rnor6.0
Rnor_5.0	2	163,876,368 - 163,878,041	UniSTS	Rnor5.0
RGSC_v3.4	2	144,275,315 - 144,276,988	UniSTS	RGSC3.4
Celera	2	133,717,076 - 133,718,749	UniSTS
RH 3.4 Map	8	1278.9	UniSTS
Cytogenetic Map	2	q26	UniSTS

PMC86923P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	139,237,347 - 139,238,099 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	144,462,297 - 144,463,048	NCBI	Rnor6.0
Rnor_5.0	2	163,880,402 - 163,881,153	UniSTS	Rnor5.0
RGSC_v3.4	2	144,279,349 - 144,280,100	UniSTS	RGSC3.4
Celera	2	133,721,110 - 133,721,861	UniSTS
Cytogenetic Map	2	q26	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium								3			7	1
Low	2	20	11	2	1	2	8	8	74	22	32	10	8
Below cutoff	1	22	17	12	11	12				13	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HH771000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000040002 ⟹ ENSRNOP00000039931

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	139,233,210 - 139,243,157 (-)	Ensembl
Rnor_6.0 Ensembl	2	144,458,153 - 144,467,912 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000095893 ⟹ ENSRNOP00000078779

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	139,201,074 - 139,243,157 (-)	Ensembl

RefSeq Acc Id:

NM_001011949 ⟹ NP_001011949

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,233,210 - 139,243,157 (-)	NCBI
Rnor_6.0	2	144,458,159 - 144,468,106 (-)	NCBI
Rnor_5.0	2	163,874,794 - 163,886,211 (-)	NCBI
RGSC_v3.4	2	144,275,211 - 144,285,196 (-)	RGD
Celera	2	133,716,972 - 133,726,933 (-)	RGD

Sequence:

show sequence

CGGGAGGGGTTCGTGTCTGTTGGGGGAACCGGTTCCTGGGGAACAGTCCCTTTCAGGGCGGCCA
CAGTGGTCAGGCCGCCATCCGCCCTCCCTGGTGACGCCGACCAAGGGGCGCGAGTGGCGACGTG
CTGTGCGTTGCGGTTCGGTGTGCCTGGCACCCCTGGCTTTGCGGCTCAGGAGCCCCGGGCTGCG
CGGTTGGCCGCGCCCCGCAGCGCCCCGGGGGCCGAGCATCAGCGGACAGCGCTGCAGCAGCAGG
CTGTGGCTTGCTAGGCAATGCGTCGCCACAGCTCGAAGAGTGGAGTCGCACTGCCTCCAGTGGG
CCAAGGTCCTGATGCTTGTCAGATGCTCACCCGAGCTCAGCTTGGCCAGGATCCCCCACAGAGA
ACCGTGCTAGGAGTGTTGACTGAAAATGAGCAGTACAGGAGGGCCTGTGGCCAGGAGATCGCAA
CGATCAGATGTTTTTCTGGATCAGAAAATGTCTTCCCTGCAGCTGGAAAGAAAGTACTCCCTGA
CAACGGGGTCAGTGAGCCAGCCAAGCATGGATTTGATATCTACATGGATGATCCTGAACAGGGG
GACAGAGACAGCTGCCCAGGGAGAGAGGGCATAGTGTTTGAGGATGTGTATGAAGTAGACACCA
GCATGCTCAAGTCAGATCTCCACTTCCTGCTGGATTTCAACACAGTTTCCCCAATGCTGGTTGA
CTCCACCGCCCATGCCCAGTCGGAGGAAGCAACGGATTTTGGTTCAGATGTGATCAACGTAACG
GAATATGCAGAGGAGATTCATCGATACCTTCGAGAAGCTGAAGTAAGACACAGACCCAAGGCTC
ACTACATGAGGAAGCAGCCGGACATCACGGAGGGCATGCGCGCCATCCTGGTGGACTGGCTGGT
GGAGGTTGGGGAAGAATATAAACTCCGCACAGAGACCCTGTACTTGGCTGTCAACTTCCTGGAC
AGGTTTCTTTCCTGCATGTCTGTTCTGAGAGGGAAATTGCAGCTTGTCGGGACAGCAGCTATTC
TCCTGGCTTCGAAATACGAAGAGATATACCCGCCCGATGTCGATGAGTTTGTCTACATCACTGA
CGACACGTACACAAAGCGACAGCTACTGAGGATGGAGCATCTGCTGCTGAAAGTCCTGGCATTC
GATCTGACCGTTCCAACCACCAACCAGTTCCTCCTTCAGTACTTAAGGCGGCAAGGGGTGTGCA
TCAGGACTGAGAATTTGGCCAAGTATGTTGCAGAACTGAGCCTTCTGGAAGCTGACCCATTCTT
GAAGTATCTTCCTTCCTTGGTAGCAGCAGCAGCTTACTGTCTGGCAAACTATATTGTGAACAGA
CACTTCTGGCCAGAAACACTTGCTGCATTTACGGGCTATTCATTAAATGAGATTGTGCCTTGCC
TGAGTGAGCTGCATAAAGCATGCCTCAGTATACCCCATCGACCGCAGCAAGCAATCAGGGAGAA
GTACAAGGCTTCGAAGTACCTGCACGTGTCCCTCATGGAGCCACCCGTAGTTCTTCCCCTGCAG
TGAACGGGTCAGCTCAACAGCCACACCAGCAGGCTTACTCTGACCTGTTACAGTTTTCTGCGGG
TCGGGCCAACTAATGTCAGTTGTAGATGTCACCTTCAACATATGAGTGTTAGGTTCTTTTAGAC
GTCGGTAGTTTATAATTTATATAGATATAGACAGGTATTTTAAAAGAATAAACAACTTGCTGTG
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232359 ⟹ XP_006232421

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,231,738 - 139,242,745 (-)	NCBI
Rnor_6.0	2	144,456,689 - 144,467,773 (-)	NCBI
Rnor_5.0	2	163,874,794 - 163,886,211 (-)	NCBI

Sequence:

show sequence

TGCTGATTGGCTGATTCAACAGACGCGGCTGGGTCGAAAGTCCTCAGTGGCGAGCGCACTAGTC
AAGGCCGCTGGAGCCGACGCCCCTGGAATCCCTCCACTCCGGGGTCCCCTCCCTCTGCGCACGG
CCCCGCCCTCCCCGCCCCGGCCCGGGTGCGCTTGCTAATCGCCCAGAGAAGAACCTGAGAAGCA
GGGCCGGCTGTGGGTTCCCAAGCAGCAGGCTGTGGCTTGCTAGGCAATGCGTCGCCACAGCTCG
AAGAGTGGAGTCGCACTGCCTCCAGTGGGCCAAGGTCCTGATGCTTGTCAGATGCTCACCCGAG
CTCAGCTTGGCCAGGATCCCCCACAGAGAACCGTGCTAGGAGTGTTGACTGAAAATGAGCAGTA
CAGGAGGGCCTGTGGCCAGGAGATCGCAACGATCAGATGTTTTTCTGGATCAGAAAATGTCTTC
CCTGCAGCTGGAAAGAAAGTACTCCCTGACAACGGGGTCAGTGAGCCAGCCAAGCATGGATTTG
ATATCTACATGGATGATCCTGAACAGGGGGACAGAGACAGCTGCCCAGGGAGAGAGGGCATAGT
GTTTGAGGATGTGTATGAAGTAGACACCAGCATGCTCAAGTCAGATCTCCACTTCCTGCTGGAT
TTCAACACAGTTTCCCCAATGCTGGTTGACTCCACCGCCCATGCCCAGTCGGAGGAAGCAACGG
ATTTTGGTTCAGATGTGATCAACGTAACGGAATATGCAGAGGAGATTCATCGATACCTTCGAGA
AGCTGAAGTAAGACACAGACCCAAGGCTCACTACATGAGGAAGCAGCCGGACATCACGGAGGGC
ATGCGCGCCATCCTGGTGGACTGGCTGGTGGAGGTTGGGGAAGAATATAAACTCCGCACAGAGA
CCCTGTACTTGGCTGTCAACTTCCTGGACAGGTTTCTTTCCTGCATGTCTGTTCTGAGAGGGAA
ATTGCAGCTTGTCGGGACAGCAGCTATTCTCCTGGCTTCGAAATACGAAGAGATATACCCGCCC
GATGTCGATGAGTTTGTCTACATCACTGACGACACGTACACAAAGCGACAGCTACTGAGGATGG
AGCATCTGCTGCTGAAAGTCCTGGCATTCGATCTGACCGTTCCAACCACCAACCAGTTCCTCCT
TCAGTACTTAAGGCGGCAAGGGGTGTGCATCAGGACTGAGAATTTGGCCAAGTATGTTGCAGAA
CTGAGCCTTCTGGAAGCTGACCCATTCTTGAAGTATCTTCCTTCCTTGGTAGCAGCAGCAGCTT
ACTGTCTGGCAAACTATATTGTGAACAGACACTTCTGGCCAGAAACACTTGCTGCATTTACGGG
CTATTCATTAAATGAGATTGTGCCTTGCCTGAGTGAGCTGCATAAAGCATGCCTCAGTATACCC
CATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTGCACGTGTCCCTCA
TGGAGCCACCCGTAGTTCTTCCCCTGCAGTGAACGGGTCAGCTCAACAGCCACACCAGCAGGCT
TACTCTGACCTGTTACAGTTTTCTGCGGGTCGGGCCAACTAATGTCAGTTGTAGATGTCACCTT
CAACATATGAGTGTTAGGTTCTTTTAGACGTCGGTAGTTTATAATTTATATAGATATAGACAGG
TATTTTAAAAGAATAAACAACTTGCTGTGTGGCCATGTGTTGGGCCTCTTTACTAGTTGGCATA
GCTGACACAACAGGCATCTTAGTTGCGAGTTATATCGTAGCTGTGTCAACACCTTCCCAAGTTG
GTTGCATAAGCATCCCACACTTTGATGATTAAGTGCTTTGAGGCGGCCAAGCCTTTCCTATCCC
GTGAAGCCCTCTGTAGACTGGTGAACAGAAGGAGAGAAGGGCCCGCTCCGATGGACTGTCAGGA
AACCTGAGTTGCTGTGAGTCCCAGCTTCCTGCTACAGCCTTCATCAGTAGAGAGGCAAGCATCC
AAGGATCTCTCCGTTCGAGTATCTTCTGGGGATGGCACAATCCACGATCCATTCTCACCCAGAG
GTATCATGGCCTTTTGTAAAGGGCTGCCATCTTGTCTATCCAGCTTGGATTCAGGTAAGAATCA
GTCATGAATTTTAACCACAGACGACACTTTGGGAAATAGGAAAAAAAAAGCAAGCTTCACTACC
AAATGACACTCTCAGATAATGAATCCAGCACCTCTCTATTTCCCCTGGGAGAAATATATCCTGA
ACACTGCCTGGGGTTGGAGGCGGGGGTTCGGGGTGTGAGAATGAAACGGAATGATTTCACCAGC
TGGCCTCCGTACTTGGCTTTCTCCTTCCATCTGGGCTCCAGCCTCTTCCTGGCTGCTGCCCATA
TTCAGACACACCCAGAAGGGTGCTTTACTGACCTCAGTCTAATCAAGTTGACTGTCAAGAATAA
CTATTCCTTATATTGCTGAGACTGCCCAGTCCCCAGAGGCTGCTCTCGACTATCGTGCAAATGA
GAGTCTAGGAAGTAAAAGCAACACAAAGGAGCCATCTCTCTCCTCGGGACAGGAAGGGAAAAGA
AAATGAATTTCTCAAGATTGTGTGGTGCTTGCTGGAGATTGAATGACTTTTAAAAATCATGCTG
GAAACGAGCAGGTTTGGGGTACACATGAGCCTCCTGGGCCATGTGCCCTTCCCTGAGGAGAAGC
CTGTGTCTGGATCATCTCTGGGGCTCACCCCAGAAGATTCTGTAGGGGGAAATACAGGTATTGT
ATGTCTTTATATAGAAAAGATTAGAAAGGTTTTGGAAAAAAATGAGAGCTCATGACATTTTGTA
GGTCTTAAGCACTATTGAAATGTTAAATAAAAATATAGATATAAAACAAACAAAACACATATAT
AAAATGTGTTTTTACATGCACACATACACACATTATACACACACACACACACACACACACACAC
ACACACACACACACACACACCTCTGTCAAAGAGTAACGAAAGCTAAATCAGGTATTTTGTGAAG
GCTTTTAAGCTTACAAGCTACTCAAAGGGCCAGTCATTCCCAAAGGTCACCCTTTCAAAGTTTT
GATGGGGAAACCAACATGTCCTAAAGCATTTTGATATTTGGCTATAGTCTCACAGGCAAGACCT
GCACCGGAATTAAATTCTCTGTACCAAG

hide sequence

RefSeq Acc Id:

XM_006232360 ⟹ XP_006232422

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,231,738 - 139,242,745 (-)	NCBI
Rnor_6.0	2	144,456,689 - 144,467,773 (-)	NCBI
Rnor_5.0	2	163,874,794 - 163,886,211 (-)	NCBI

Sequence:

show sequence

TGCTGATTGGCTGATTCAACAGACGCGGCTGGGTCGAAAGTCCTCAGTGGCGAGCGCACTAGTC
AAGGCCGCTGGAGCCGACGCCCCTGGAATCCCTCCACTCCGGGGTCCCCTCCCTCTGCGCACGG
CCCCGCCCTCCCCGCCCCGGCCCGGGTGCGCTTGCTAATCGCCCAGAGAAGAACCTGAGAAGCA
GGGCCGGCTGTGGGTTCCCAAGCAGCAGCAGGCTGTGGCTTGCTAGGCAATGCGTCGCCACAGC
TCGAAGAGTGGAGTCGCACTGCCTCCAGTGGGCCAAGGTCCTGATGCTTGTCAGATGCTCACCC
GAGCTCAGCTTGGCCAGGATCCCCCACAGAGAACCGTGCTAGGAGTGTTGACTGAAAATGAGCA
GTACAGGAGGGCCTGTGGCCAGGAGATCGCAACGATCAGATGTTTTTCTGGATCAGAAAATGTC
TTCCCTGCAGCTGGAAAGAAAGTACTCCCTGACAACGGGGTCAGTGAGCCAGCCAAGCATGGAT
TTGATATCTACATGGATGATCCTGAACAGGGGGACAGAGACAGCTGCCCAGGGAGAGAGGGCAT
AGTGTTTGAGGATGTGTATGAAGTAGACACCAGCATGCTCAAGTCAGATCTCCACTTCCTGCTG
GATTTCAACACAGTTTCCCCAATGCTGGTTGACTCCACCGCCCATGCCCAGTCGGAGGAAGCAA
CGGATTTTGGTTCAGATGTGATCAACGTAACGGAATATGCAGAGGAGATTCATCGATACCTTCG
AGAAGCTGAAGTAAGACACAGACCCAAGGCTCACTACATGAGGAAGCAGCCGGACATCACGGAG
GGCATGCGCGCCATCCTGGTGGACTGGCTGGTGGAGGTTGGGGAAGAATATAAACTCCGCACAG
AGACCCTGTACTTGGCTGTCAACTTCCTGGACAGGTTTCTTTCCTGCATGTCTGTTCTGAGAGG
GAAATTGCAGCTTGTCGGGACAGCAGCTATTCTCCTGGCTTCGAAATACGAAGAGATATACCCG
CCCGATGTCGATGAGTTTGTCTACATCACTGACGACACGTACACAAAGCGACAGCTACTGAGGA
TGGAGCATCTGCTGCTGAAAGTCCTGGCATTCGATCTGACCGTTCCAACCACCAACCAGTTCCT
CCTTCAGTACTTAAGGCGGCAAGGGGTGTGCATCAGGACTGAGAATTTGGCCAAGTATGTTGCA
GAACTGAGCCTTCTGGAAGCTGACCCATTCTTGAAGTATCTTCCTTCCTTGGTAGCAGCAGCAG
CTTACTGTCTGGCAAACTATATTGTGAACAGACACTTCTGGCCAGAAACACTTGCTGCATTTAC
GGGCTATTCATTAAATGAGATTGTGCCTTGCCTGAGTGAGCTGCATAAAGCATGCCTCAGTATA
CCCCATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTGCACGTGTCCC
TCATGGAGCCACCCGTAGTTCTTCCCCTGCAGTGAACGGGTCAGCTCAACAGCCACACCAGCAG
GCTTACTCTGACCTGTTACAGTTTTCTGCGGGTCGGGCCAACTAATGTCAGTTGTAGATGTCAC
CTTCAACATATGAGTGTTAGGTTCTTTTAGACGTCGGTAGTTTATAATTTATATAGATATAGAC
AGGTATTTTAAAAGAATAAACAACTTGCTGTGTGGCCATGTGTTGGGCCTCTTTACTAGTTGGC
ATAGCTGACACAACAGGCATCTTAGTTGCGAGTTATATCGTAGCTGTGTCAACACCTTCCCAAG
TTGGTTGCATAAGCATCCCACACTTTGATGATTAAGTGCTTTGAGGCGGCCAAGCCTTTCCTAT
CCCGTGAAGCCCTCTGTAGACTGGTGAACAGAAGGAGAGAAGGGCCCGCTCCGATGGACTGTCA
GGAAACCTGAGTTGCTGTGAGTCCCAGCTTCCTGCTACAGCCTTCATCAGTAGAGAGGCAAGCA
TCCAAGGATCTCTCCGTTCGAGTATCTTCTGGGGATGGCACAATCCACGATCCATTCTCACCCA
GAGGTATCATGGCCTTTTGTAAAGGGCTGCCATCTTGTCTATCCAGCTTGGATTCAGGTAAGAA
TCAGTCATGAATTTTAACCACAGACGACACTTTGGGAAATAGGAAAAAAAAAGCAAGCTTCACT
ACCAAATGACACTCTCAGATAATGAATCCAGCACCTCTCTATTTCCCCTGGGAGAAATATATCC
TGAACACTGCCTGGGGTTGGAGGCGGGGGTTCGGGGTGTGAGAATGAAACGGAATGATTTCACC
AGCTGGCCTCCGTACTTGGCTTTCTCCTTCCATCTGGGCTCCAGCCTCTTCCTGGCTGCTGCCC
ATATTCAGACACACCCAGAAGGGTGCTTTACTGACCTCAGTCTAATCAAGTTGACTGTCAAGAA
TAACTATTCCTTATATTGCTGAGACTGCCCAGTCCCCAGAGGCTGCTCTCGACTATCGTGCAAA
TGAGAGTCTAGGAAGTAAAAGCAACACAAAGGAGCCATCTCTCTCCTCGGGACAGGAAGGGAAA
AGAAAATGAATTTCTCAAGATTGTGTGGTGCTTGCTGGAGATTGAATGACTTTTAAAAATCATG
CTGGAAACGAGCAGGTTTGGGGTACACATGAGCCTCCTGGGCCATGTGCCCTTCCCTGAGGAGA
AGCCTGTGTCTGGATCATCTCTGGGGCTCACCCCAGAAGATTCTGTAGGGGGAAATACAGGTAT
TGTATGTCTTTATATAGAAAAGATTAGAAAGGTTTTGGAAAAAAATGAGAGCTCATGACATTTT
GTAGGTCTTAAGCACTATTGAAATGTTAAATAAAAATATAGATATAAAACAAACAAAACACATA
TATAAAATGTGTTTTTACATGCACACATACACACATTATACACACACACACACACACACACACA
CACACACACACACACACACACACCTCTGTCAAAGAGTAACGAAAGCTAAATCAGGTATTTTGTG
AAGGCTTTTAAGCTTACAAGCTACTCAAAGGGCCAGTCATTCCCAAAGGTCACCCTTTCAAAGT
TTTGATGGGGAAACCAACATGTCCTAAAGCATTTTGATATTTGGCTATAGTCTCACAGGCAAGA
CCTGCACCGGAATTAAATTCTCTGTACCAAG

hide sequence

RefSeq Acc Id:

XM_006232361 ⟹ XP_006232423

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,231,738 - 139,243,047 (-)	NCBI
Rnor_6.0	2	144,456,689 - 144,468,112 (-)	NCBI
Rnor_5.0	2	163,874,794 - 163,886,211 (-)	NCBI

Sequence:

show sequence

CGTTAGCGGGAGGGGTTCGTGTCTGTTGGGGGAACCGGTTCCTGGGGAACAGTCCCTTTCAGGG
CGGCCACAGTGGTCAGGCCGCCATCCGCCCTCCCTGGTGACGCCGACCAAGGGGCGCGAGTGGC
GACGTGCTGTGCGTTGCGGTTCGGTGTGCCTGGCACCCCTGGCTTTGCGGCTCAGGAGCCCCGG
GCTGCGCGGTTGGCCGCGCCCCGCAGCGCCCCGGGGGCCGAGCATCAGCGGACAGCGCTGCAGC
AGGCTGTGGCTTGCTAGGCAATGCGTCGCCACAGCTCGAAGAGTGGAGTCGCACTGCCTCCAGT
GGGCCAAGGTCCTGATGCTTGTCAGATGCTCACCCGAGCTCAGCTTGGCCAGGATCCCCCACAG
AGAACCGTGCTAGGAGTGTTGACTGAAAATGAGCAGTACAGGAGGGCCTGTGGCCAGGAGATCG
CAACGATCAGATGTTTTTCTGGATCAGAAAATGTCTTCCCTGCAGCTGGAAAGAAAGTACTCCC
TGACAACGGGGTCAGTGAGCCAGCCAAGCATGGATTTGATATCTACATGGATGATCCTGAACAG
GGGGACAGAGACAGCTGCCCAGGGAGAGAGGGCATAGTGTTTGAGGATGTGTATGAAGTAGACA
CCAGCATGCTCAAGTCAGATCTCCACTTCCTGCTGGATTTCAACACAGTTTCCCCAATGCTGGT
TGACTCCACCGCCCATGCCCAGTCGGAGGAAGCAACGGATTTTGGTTCAGATGTGATCAACGTA
ACGGAATATGCAGAGGAGATTCATCGATACCTTCGAGAAGCTGAAGTAAGACACAGACCCAAGG
CTCACTACATGAGGAAGCAGCCGGACATCACGGAGGGCATGCGCGCCATCCTGGTGGACTGGCT
GGTGGAGGTTGGGGAAGAATATAAACTCCGCACAGAGACCCTGTACTTGGCTGTCAACTTCCTG
GACAGGTTTCTTTCCTGCATGTCTGTTCTGAGAGGGAAATTGCAGCTTGTCGGGACAGCAGCTA
TTCTCCTGGCTTCGAAATACGAAGAGATATACCCGCCCGATGTCGATGAGTTTGTCTACATCAC
TGACGACACGTACACAAAGCGACAGCTACTGAGGATGGAGCATCTGCTGCTGAAAGTCCTGGCA
TTCGATCTGACCGTTCCAACCACCAACCAGTTCCTCCTTCAGTACTTAAGGCGGCAAGGGGTGT
GCATCAGGACTGAGAATTTGGCCAAGTATGTTGCAGAACTGAGCCTTCTGGAAGCTGACCCATT
CTTGAAGTATCTTCCTTCCTTGGTAGCAGCAGCAGCTTACTGTCTGGCAAACTATATTGTGAAC
AGACACTTCTGGCCAGAAACACTTGCTGCATTTACGGGCTATTCATTAAATGAGATTGTGCCTT
GCCTGAGTGAGCTGCATAAAGCATGCCTCAGTATACCCCATCGACCGCAGCAAGCAATCAGGGA
GAAGTACAAGGCTTCGAAGTACCTGCACGTGTCCCTCATGGAGCCACCCGTAGTTCTTCCCCTG
CAGTGAACGGGTCAGCTCAACAGCCACACCAGCAGGCTTACTCTGACCTGTTACAGTTTTCTGC
GGGTCGGGCCAACTAATGTCAGTTGTAGATGTCACCTTCAACATATGAGTGTTAGGTTCTTTTA
GACGTCGGTAGTTTATAATTTATATAGATATAGACAGGTATTTTAAAAGAATAAACAACTTGCT
GTGTGGCCATGTGTTGGGCCTCTTTACTAGTTGGCATAGCTGACACAACAGGCATCTTAGTTGC
GAGTTATATCGTAGCTGTGTCAACACCTTCCCAAGTTGGTTGCATAAGCATCCCACACTTTGAT
GATTAAGTGCTTTGAGGCGGCCAAGCCTTTCCTATCCCGTGAAGCCCTCTGTAGACTGGTGAAC
AGAAGGAGAGAAGGGCCCGCTCCGATGGACTGTCAGGAAACCTGAGTTGCTGTGAGTCCCAGCT
TCCTGCTACAGCCTTCATCAGTAGAGAGGCAAGCATCCAAGGATCTCTCCGTTCGAGTATCTTC
TGGGGATGGCACAATCCACGATCCATTCTCACCCAGAGGTATCATGGCCTTTTGTAAAGGGCTG
CCATCTTGTCTATCCAGCTTGGATTCAGGTAAGAATCAGTCATGAATTTTAACCACAGACGACA
CTTTGGGAAATAGGAAAAAAAAAGCAAGCTTCACTACCAAATGACACTCTCAGATAATGAATCC
AGCACCTCTCTATTTCCCCTGGGAGAAATATATCCTGAACACTGCCTGGGGTTGGAGGCGGGGG
TTCGGGGTGTGAGAATGAAACGGAATGATTTCACCAGCTGGCCTCCGTACTTGGCTTTCTCCTT
CCATCTGGGCTCCAGCCTCTTCCTGGCTGCTGCCCATATTCAGACACACCCAGAAGGGTGCTTT
ACTGACCTCAGTCTAATCAAGTTGACTGTCAAGAATAACTATTCCTTATATTGCTGAGACTGCC
CAGTCCCCAGAGGCTGCTCTCGACTATCGTGCAAATGAGAGTCTAGGAAGTAAAAGCAACACAA
AGGAGCCATCTCTCTCCTCGGGACAGGAAGGGAAAAGAAAATGAATTTCTCAAGATTGTGTGGT
GCTTGCTGGAGATTGAATGACTTTTAAAAATCATGCTGGAAACGAGCAGGTTTGGGGTACACAT
GAGCCTCCTGGGCCATGTGCCCTTCCCTGAGGAGAAGCCTGTGTCTGGATCATCTCTGGGGCTC
ACCCCAGAAGATTCTGTAGGGGGAAATACAGGTATTGTATGTCTTTATATAGAAAAGATTAGAA
AGGTTTTGGAAAAAAATGAGAGCTCATGACATTTTGTAGGTCTTAAGCACTATTGAAATGTTAA
ATAAAAATATAGATATAAAACAAACAAAACACATATATAAAATGTGTTTTTACATGCACACATA
CACACATTATACACACACACACACACACACACACACACACACACACACACACACACACCTCTGT
CAAAGAGTAACGAAAGCTAAATCAGGTATTTTGTGAAGGCTTTTAAGCTTACAAGCTACTCAAA
GGGCCAGTCATTCCCAAAGGTCACCCTTTCAAAGTTTTGATGGGGAAACCAACATGTCCTAAAG
CATTTTGATATTTGGCTATAGTCTCACAGGCAAGACCTGCACCGGAATTAAATTCTCTGTACCA
AG

hide sequence

RefSeq Acc Id:

XM_008760987 ⟹ XP_008759209

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,231,738 - 139,244,373 (-)	NCBI
Rnor_6.0	2	144,456,689 - 144,469,223 (-)	NCBI

Sequence:

show sequence

TCCTGGGTGGCTTAGCAGCATCTGTCCCAGCAGCAACCAATATGTTCCTGAACCCCATATGTCA
TCTTCATATTTGAGGACCGAGAATTAGAGGATGCAACATGTAGAAGTTCAGTCATACCGAACAA
GGAGTTTTTTGCACTTCTGCATCCAGTGTGGGTTGGTGGAATGCTTTGCAAAGCCCTCTTCACA
AGCCGCTCAATCAGATGGCTTTGAGTCCACACTTTTCTTGGAATCTTCTGCTTCTGGTCGGTTG
AGACAGTTCACAGCTGCAGCAGGCTGTGGCTTGCTAGGCAATGCGTCGCCACAGCTCGAAGAGT
GGAGTCGCACTGCCTCCAGTGGGCCAAGGTCCTGATGCTTGTCAGATGCTCACCCGAGCTCAGC
TTGGCCAGGATCCCCCACAGAGAACCGTGCTAGGAGTGTTGACTGAAAATGAGCAGTACAGGAG
GGCCTGTGGCCAGGAGATCGCAACGATCAGATGTTTTTCTGGATCAGAAAATGTCTTCCCTGCA
GCTGGAAAGAAAGTACTCCCTGACAACGGGGTCAGTGAGCCAGCCAAGCATGGATTTGATATCT
ACATGGATGATCCTGAACAGGGGGACAGAGACAGCTGCCCAGGGAGAGAGGGCATAGTGTTTGA
GGATGTGTATGAAGTAGACACCAGCATGCTCAAGTCAGATCTCCACTTCCTGCTGGATTTCAAC
ACAGTTTCCCCAATGCTGGTTGACTCCACCGCCCATGCCCAGTCGGAGGAAGCAACGGATTTTG
GTTCAGATGTGATCAACGTAACGGAATATGCAGAGGAGATTCATCGATACCTTCGAGAAGCTGA
AGTAAGACACAGACCCAAGGCTCACTACATGAGGAAGCAGCCGGACATCACGGAGGGCATGCGC
GCCATCCTGGTGGACTGGCTGGTGGAGGTTGGGGAAGAATATAAACTCCGCACAGAGACCCTGT
ACTTGGCTGTCAACTTCCTGGACAGGTTTCTTTCCTGCATGTCTGTTCTGAGAGGGAAATTGCA
GCTTGTCGGGACAGCAGCTATTCTCCTGGCTTCGAAATACGAAGAGATATACCCGCCCGATGTC
GATGAGTTTGTCTACATCACTGACGACACGTACACAAAGCGACAGCTACTGAGGATGGAGCATC
TGCTGCTGAAAGTCCTGGCATTCGATCTGACCGTTCCAACCACCAACCAGTTCCTCCTTCAGTA
CTTAAGGCGGCAAGGGGTGTGCATCAGGACTGAGAATTTGGCCAAGTATGTTGCAGAACTGAGC
CTTCTGGAAGCTGACCCATTCTTGAAGTATCTTCCTTCCTTGGTAGCAGCAGCAGCTTACTGTC
TGGCAAACTATATTGTGAACAGACACTTCTGGCCAGAAACACTTGCTGCATTTACGGGCTATTC
ATTAAATGAGATTGTGCCTTGCCTGAGTGAGCTGCATAAAGCATGCCTCAGTATACCCCATCGA
CCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTGCACGTGTCCCTCATGGAGC
CACCCGTAGTTCTTCCCCTGCAGTGAACGGGTCAGCTCAACAGCCACACCAGCAGGCTTACTCT
GACCTGTTACAGTTTTCTGCGGGTCGGGCCAACTAATGTCAGTTGTAGATGTCACCTTCAACAT
ATGAGTGTTAGGTTCTTTTAGACGTCGGTAGTTTATAATTTATATAGATATAGACAGGTATTTT
AAAAGAATAAACAACTTGCTGTGTGGCCATGTGTTGGGCCTCTTTACTAGTTGGCATAGCTGAC
ACAACAGGCATCTTAGTTGCGAGTTATATCGTAGCTGTGTCAACACCTTCCCAAGTTGGTTGCA
TAAGCATCCCACACTTTGATGATTAAGTGCTTTGAGGCGGCCAAGCCTTTCCTATCCCGTGAAG
CCCTCTGTAGACTGGTGAACAGAAGGAGAGAAGGGCCCGCTCCGATGGACTGTCAGGAAACCTG
AGTTGCTGTGAGTCCCAGCTTCCTGCTACAGCCTTCATCAGTAGAGAGGCAAGCATCCAAGGAT
CTCTCCGTTCGAGTATCTTCTGGGGATGGCACAATCCACGATCCATTCTCACCCAGAGGTATCA
TGGCCTTTTGTAAAGGGCTGCCATCTTGTCTATCCAGCTTGGATTCAGGTAAGAATCAGTCATG
AATTTTAACCACAGACGACACTTTGGGAAATAGGAAAAAAAAAGCAAGCTTCACTACCAAATGA
CACTCTCAGATAATGAATCCAGCACCTCTCTATTTCCCCTGGGAGAAATATATCCTGAACACTG
CCTGGGGTTGGAGGCGGGGGTTCGGGGTGTGAGAATGAAACGGAATGATTTCACCAGCTGGCCT
CCGTACTTGGCTTTCTCCTTCCATCTGGGCTCCAGCCTCTTCCTGGCTGCTGCCCATATTCAGA
CACACCCAGAAGGGTGCTTTACTGACCTCAGTCTAATCAAGTTGACTGTCAAGAATAACTATTC
CTTATATTGCTGAGACTGCCCAGTCCCCAGAGGCTGCTCTCGACTATCGTGCAAATGAGAGTCT
AGGAAGTAAAAGCAACACAAAGGAGCCATCTCTCTCCTCGGGACAGGAAGGGAAAAGAAAATGA
ATTTCTCAAGATTGTGTGGTGCTTGCTGGAGATTGAATGACTTTTAAAAATCATGCTGGAAACG
AGCAGGTTTGGGGTACACATGAGCCTCCTGGGCCATGTGCCCTTCCCTGAGGAGAAGCCTGTGT
CTGGATCATCTCTGGGGCTCACCCCAGAAGATTCTGTAGGGGGAAATACAGGTATTGTATGTCT
TTATATAGAAAAGATTAGAAAGGTTTTGGAAAAAAATGAGAGCTCATGACATTTTGTAGGTCTT
AAGCACTATTGAAATGTTAAATAAAAATATAGATATAAAACAAACAAAACACATATATAAAATG
TGTTTTTACATGCACACATACACACATTATACACACACACACACACACACACACACACACACAC
ACACACACACACACCTCTGTCAAAGAGTAACGAAAGCTAAATCAGGTATTTTGTGAAGGCTTTT
AAGCTTACAAGCTACTCAAAGGGCCAGTCATTCCCAAAGGTCACCCTTTCAAAGTTTTGATGGG
GAAACCAACATGTCCTAAAGCATTTTGATATTTGGCTATAGTCTCACAGGCAAGACCTGCACCG
GAATTAAATTCTCTGTACCAAG

hide sequence

RefSeq Acc Id:

XM_008760988 ⟹ XP_008759210

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,231,738 - 139,242,748 (-)	NCBI
Rnor_6.0	2	144,456,689 - 144,467,773 (-)	NCBI

Sequence:

show sequence

TGCTGATTGGCTGATTCAACAGACGCGGCTGGGTCGAAAGTCCTCAGTGGCGAGCGCACTAGTC
AAGGCCGCTGGAGCCGACGCCCCTGGAATCCCTCCACTCCGGGGTCCCCTCCCTCTGCGCACGG
CCCCGCCCTCCCCGCCCCGGCCCGGGTGCGCTTGCTAATCGCCCAGAGAAGAACCTGAGAAGCA
GGGCCGGCTCAGGCTGTGGCTTGCTAGGCAATGCGTCGCCACAGCTCGAAGAGTGGAGTCGCAC
TGCCTCCAGTGGGCCAAGGTCCTGATGCTTGTCAGATGCTCACCCGAGCTCAGCTTGGCCAGGA
TCCCCCACAGAGAACCGTGCTAGGAGTGTTGACTGAAAATGAGCAGTACAGGAGGGCCTGTGGC
CAGGAGATCGCAACGATCAGATGTTTTTCTGGATCAGAAAATGTCTTCCCTGCAGCTGGAAAGA
AAGTACTCCCTGACAACGGGGTCAGTGAGCCAGCCAAGCATGGATTTGATATCTACATGGATGA
TCCTGAACAGGGGGACAGAGACAGCTGCCCAGGGAGAGAGGGCATAGTGTTTGAGGATGTGTAT
GAAGTAGACACCAGCATGCTCAAGTCAGATCTCCACTTCCTGCTGGATTTCAACACAGTTTCCC
CAATGCTGGTTGACTCCACCGCCCATGCCCAGTCGGAGGAAGCAACGGATTTTGGTTCAGATGT
GATCAACGTAACGGAATATGCAGAGGAGATTCATCGATACCTTCGAGAAGCTGAAGTAAGACAC
AGACCCAAGGCTCACTACATGAGGAAGCAGCCGGACATCACGGAGGGCATGCGCGCCATCCTGG
TGGACTGGCTGGTGGAGGTTGGGGAAGAATATAAACTCCGCACAGAGACCCTGTACTTGGCTGT
CAACTTCCTGGACAGGTTTCTTTCCTGCATGTCTGTTCTGAGAGGGAAATTGCAGCTTGTCGGG
ACAGCAGCTATTCTCCTGGCTTCGAAATACGAAGAGATATACCCGCCCGATGTCGATGAGTTTG
TCTACATCACTGACGACACGTACACAAAGCGACAGCTACTGAGGATGGAGCATCTGCTGCTGAA
AGTCCTGGCATTCGATCTGACCGTTCCAACCACCAACCAGTTCCTCCTTCAGTACTTAAGGCGG
CAAGGGGTGTGCATCAGGACTGAGAATTTGGCCAAGTATGTTGCAGAACTGAGCCTTCTGGAAG
CTGACCCATTCTTGAAGTATCTTCCTTCCTTGGTAGCAGCAGCAGCTTACTGTCTGGCAAACTA
TATTGTGAACAGACACTTCTGGCCAGAAACACTTGCTGCATTTACGGGCTATTCATTAAATGAG
ATTGTGCCTTGCCTGAGTGAGCTGCATAAAGCATGCCTCAGTATACCCCATCGACCGCAGCAAG
CAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTGCACGTGTCCCTCATGGAGCCACCCGTAGT
TCTTCCCCTGCAGTGAACGGGTCAGCTCAACAGCCACACCAGCAGGCTTACTCTGACCTGTTAC
AGTTTTCTGCGGGTCGGGCCAACTAATGTCAGTTGTAGATGTCACCTTCAACATATGAGTGTTA
GGTTCTTTTAGACGTCGGTAGTTTATAATTTATATAGATATAGACAGGTATTTTAAAAGAATAA
ACAACTTGCTGTGTGGCCATGTGTTGGGCCTCTTTACTAGTTGGCATAGCTGACACAACAGGCA
TCTTAGTTGCGAGTTATATCGTAGCTGTGTCAACACCTTCCCAAGTTGGTTGCATAAGCATCCC
ACACTTTGATGATTAAGTGCTTTGAGGCGGCCAAGCCTTTCCTATCCCGTGAAGCCCTCTGTAG
ACTGGTGAACAGAAGGAGAGAAGGGCCCGCTCCGATGGACTGTCAGGAAACCTGAGTTGCTGTG
AGTCCCAGCTTCCTGCTACAGCCTTCATCAGTAGAGAGGCAAGCATCCAAGGATCTCTCCGTTC
GAGTATCTTCTGGGGATGGCACAATCCACGATCCATTCTCACCCAGAGGTATCATGGCCTTTTG
TAAAGGGCTGCCATCTTGTCTATCCAGCTTGGATTCAGGTAAGAATCAGTCATGAATTTTAACC
ACAGACGACACTTTGGGAAATAGGAAAAAAAAAGCAAGCTTCACTACCAAATGACACTCTCAGA
TAATGAATCCAGCACCTCTCTATTTCCCCTGGGAGAAATATATCCTGAACACTGCCTGGGGTTG
GAGGCGGGGGTTCGGGGTGTGAGAATGAAACGGAATGATTTCACCAGCTGGCCTCCGTACTTGG
CTTTCTCCTTCCATCTGGGCTCCAGCCTCTTCCTGGCTGCTGCCCATATTCAGACACACCCAGA
AGGGTGCTTTACTGACCTCAGTCTAATCAAGTTGACTGTCAAGAATAACTATTCCTTATATTGC
TGAGACTGCCCAGTCCCCAGAGGCTGCTCTCGACTATCGTGCAAATGAGAGTCTAGGAAGTAAA
AGCAACACAAAGGAGCCATCTCTCTCCTCGGGACAGGAAGGGAAAAGAAAATGAATTTCTCAAG
ATTGTGTGGTGCTTGCTGGAGATTGAATGACTTTTAAAAATCATGCTGGAAACGAGCAGGTTTG
GGGTACACATGAGCCTCCTGGGCCATGTGCCCTTCCCTGAGGAGAAGCCTGTGTCTGGATCATC
TCTGGGGCTCACCCCAGAAGATTCTGTAGGGGGAAATACAGGTATTGTATGTCTTTATATAGAA
AAGATTAGAAAGGTTTTGGAAAAAAATGAGAGCTCATGACATTTTGTAGGTCTTAAGCACTATT
GAAATGTTAAATAAAAATATAGATATAAAACAAACAAAACACATATATAAAATGTGTTTTTACA
TGCACACATACACACATTATACACACACACACACACACACACACACACACACACACACACACAC
ACACCTCTGTCAAAGAGTAACGAAAGCTAAATCAGGTATTTTGTGAAGGCTTTTAAGCTTACAA
GCTACTCAAAGGGCCAGTCATTCCCAAAGGTCACCCTTTCAAAGTTTTGATGGGGAAACCAACA
TGTCCTAAAGCATTTTGATATTTGGCTATAGTCTCACAGGCAAGACCTGCACCGGAATTAAATT
CTCTGTACCAAG

hide sequence

RefSeq Acc Id:

XM_017590749 ⟹ XP_017446238

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,231,738 - 139,278,034 (-)	NCBI
Rnor_6.0	2	144,456,689 - 144,503,570 (-)	NCBI

Sequence:

show sequence

CTTGTTAGCCTTAGGCTTTTTGGTCCTCAGTACATGTGGGTTACAAAAGCGCCCCTTACTGTGA
ATAAACACGGTTCCATCCCAGCAGCAGGCTGTGGCTTGCTAGGCAATGCGTCGCCACAGCTCGA
AGAGTGGAGTCGCACTGCCTCCAGTGGGCCAAGGTCCTGATGCTTGTCAGATGCTCACCCGAGC
TCAGCTTGGCCAGGATCCCCCACAGAGAACCGTGCTAGGAGTGTTGACTGAAAATGAGCAGTAC
AGGAGGGCCTGTGGCCAGGAGATCGCAACGATCAGATGTTTTTCTGGATCAGAAAATGTCTTCC
CTGCAGCTGGAAAGAAAGTACTCCCTGACAACGGGGTCAGTGAGCCAGCCAAGCATGGATTTGA
TATCTACATGGATGATCCTGAACAGGGGGACAGAGACAGCTGCCCAGGGAGAGAGGGCATAGTG
TTTGAGGATGTGTATGAAGTAGACACCAGCATGCTCAAGTCAGATCTCCACTTCCTGCTGGATT
TCAACACAGTTTCCCCAATGCTGGTTGACTCCACCGCCCATGCCCAGTCGGAGGAAGCAACGGA
TTTTGGTTCAGATGTGATCAACGTAACGGAATATGCAGAGGAGATTCATCGATACCTTCGAGAA
GCTGAAGTAAGACACAGACCCAAGGCTCACTACATGAGGAAGCAGCCGGACATCACGGAGGGCA
TGCGCGCCATCCTGGTGGACTGGCTGGTGGAGGTTGGGGAAGAATATAAACTCCGCACAGAGAC
CCTGTACTTGGCTGTCAACTTCCTGGACAGGTTTCTTTCCTGCATGTCTGTTCTGAGAGGGAAA
TTGCAGCTTGTCGGGACAGCAGCTATTCTCCTGGCTTCGAAATACGAAGAGATATACCCGCCCG
ATGTCGATGAGTTTGTCTACATCACTGACGACACGTACACAAAGCGACAGCTACTGAGGATGGA
GCATCTGCTGCTGAAAGTCCTGGCATTCGATCTGACCGTTCCAACCACCAACCAGTTCCTCCTT
CAGTACTTAAGGCGGCAAGGGGTGTGCATCAGGACTGAGAATTTGGCCAAGTATGTTGCAGAAC
TGAGCCTTCTGGAAGCTGACCCATTCTTGAAGTATCTTCCTTCCTTGGTAGCAGCAGCAGCTTA
CTGTCTGGCAAACTATATTGTGAACAGACACTTCTGGCCAGAAACACTTGCTGCATTTACGGGC
TATTCATTAAATGAGATTGTGCCTTGCCTGAGTGAGCTGCATAAAGCATGCCTCAGTATACCCC
ATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTGCACGTGTCCCTCAT
GGAGCCACCCGTAGTTCTTCCCCTGCAGTGAACGGGTCAGCTCAACAGCCACACCAGCAGGCTT
ACTCTGACCTGTTACAGTTTTCTGCGGGTCGGGCCAACTAATGTCAGTTGTAGATGTCACCTTC
AACATATGAGTGTTAGGTTCTTTTAGACGTCGGTAGTTTATAATTTATATAGATATAGACAGGT
ATTTTAAAAGAATAAACAACTTGCTGTGTGGCCATGTGTTGGGCCTCTTTACTAGTTGGCATAG
CTGACACAACAGGCATCTTAGTTGCGAGTTATATCGTAGCTGTGTCAACACCTTCCCAAGTTGG
TTGCATAAGCATCCCACACTTTGATGATTAAGTGCTTTGAGGCGGCCAAGCCTTTCCTATCCCG
TGAAGCCCTCTGTAGACTGGTGAACAGAAGGAGAGAAGGGCCCGCTCCGATGGACTGTCAGGAA
ACCTGAGTTGCTGTGAGTCCCAGCTTCCTGCTACAGCCTTCATCAGTAGAGAGGCAAGCATCCA
AGGATCTCTCCGTTCGAGTATCTTCTGGGGATGGCACAATCCACGATCCATTCTCACCCAGAGG
TATCATGGCCTTTTGTAAAGGGCTGCCATCTTGTCTATCCAGCTTGGATTCAGGTAAGAATCAG
TCATGAATTTTAACCACAGACGACACTTTGGGAAATAGGAAAAAAAAAGCAAGCTTCACTACCA
AATGACACTCTCAGATAATGAATCCAGCACCTCTCTATTTCCCCTGGGAGAAATATATCCTGAA
CACTGCCTGGGGTTGGAGGCGGGGGTTCGGGGTGTGAGAATGAAACGGAATGATTTCACCAGCT
GGCCTCCGTACTTGGCTTTCTCCTTCCATCTGGGCTCCAGCCTCTTCCTGGCTGCTGCCCATAT
TCAGACACACCCAGAAGGGTGCTTTACTGACCTCAGTCTAATCAAGTTGACTGTCAAGAATAAC
TATTCCTTATATTGCTGAGACTGCCCAGTCCCCAGAGGCTGCTCTCGACTATCGTGCAAATGAG
AGTCTAGGAAGTAAAAGCAACACAAAGGAGCCATCTCTCTCCTCGGGACAGGAAGGGAAAAGAA
AATGAATTTCTCAAGATTGTGTGGTGCTTGCTGGAGATTGAATGACTTTTAAAAATCATGCTGG
AAACGAGCAGGTTTGGGGTACACATGAGCCTCCTGGGCCATGTGCCCTTCCCTGAGGAGAAGCC
TGTGTCTGGATCATCTCTGGGGCTCACCCCAGAAGATTCTGTAGGGGGAAATACAGGTATTGTA
TGTCTTTATATAGAAAAGATTAGAAAGGTTTTGGAAAAAAATGAGAGCTCATGACATTTTGTAG
GTCTTAAGCACTATTGAAATGTTAAATAAAAATATAGATATAAAACAAACAAAACACATATATA
AAATGTGTTTTTACATGCACACATACACACATTATACACACACACACACACACACACACACACA
CACACACACACACACACACCTCTGTCAAAGAGTAACGAAAGCTAAATCAGGTATTTTGTGAAGG
CTTTTAAGCTTACAAGCTACTCAAAGGGCCAGTCATTCCCAAAGGTCACCCTTTCAAAGTTTTG
ATGGGGAAACCAACATGTCCTAAAGCATTTTGATATTTGGCTATAGTCTCACAGGCAAGACCTG
CACCGGAATTAAATTCTCTGTACCAAG

hide sequence

RefSeq Acc Id:

XM_017590750 ⟹ XP_017446239

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,231,738 - 139,277,976 (-)	NCBI
Rnor_6.0	2	144,456,689 - 144,503,568 (-)	NCBI

Sequence:

show sequence

TGTTAGCCTTAGGCTTTTTGGTCCTCAGTACATGTGGGTTACAAAAGCGCCCCTTACTGTGAAT
AAACACGGTTCCATCCCAGCAGGCTGTGGCTTGCTAGGCAATGCGTCGCCACAGCTCGAAGAGT
GGAGTCGCACTGCCTCCAGTGGGCCAAGGTCCTGATGCTTGTCAGATGCTCACCCGAGCTCAGC
TTGGCCAGGATCCCCCACAGAGAACCGTGCTAGGAGTGTTGACTGAAAATGAGCAGTACAGGAG
GGCCTGTGGCCAGGAGATCGCAACGATCAGATGTTTTTCTGGATCAGAAAATGTCTTCCCTGCA
GCTGGAAAGAAAGTACTCCCTGACAACGGGGTCAGTGAGCCAGCCAAGCATGGATTTGATATCT
ACATGGATGATCCTGAACAGGGGGACAGAGACAGCTGCCCAGGGAGAGAGGGCATAGTGTTTGA
GGATGTGTATGAAGTAGACACCAGCATGCTCAAGTCAGATCTCCACTTCCTGCTGGATTTCAAC
ACAGTTTCCCCAATGCTGGTTGACTCCACCGCCCATGCCCAGTCGGAGGAAGCAACGGATTTTG
GTTCAGATGTGATCAACGTAACGGAATATGCAGAGGAGATTCATCGATACCTTCGAGAAGCTGA
AGTAAGACACAGACCCAAGGCTCACTACATGAGGAAGCAGCCGGACATCACGGAGGGCATGCGC
GCCATCCTGGTGGACTGGCTGGTGGAGGTTGGGGAAGAATATAAACTCCGCACAGAGACCCTGT
ACTTGGCTGTCAACTTCCTGGACAGGTTTCTTTCCTGCATGTCTGTTCTGAGAGGGAAATTGCA
GCTTGTCGGGACAGCAGCTATTCTCCTGGCTTCGAAATACGAAGAGATATACCCGCCCGATGTC
GATGAGTTTGTCTACATCACTGACGACACGTACACAAAGCGACAGCTACTGAGGATGGAGCATC
TGCTGCTGAAAGTCCTGGCATTCGATCTGACCGTTCCAACCACCAACCAGTTCCTCCTTCAGTA
CTTAAGGCGGCAAGGGGTGTGCATCAGGACTGAGAATTTGGCCAAGTATGTTGCAGAACTGAGC
CTTCTGGAAGCTGACCCATTCTTGAAGTATCTTCCTTCCTTGGTAGCAGCAGCAGCTTACTGTC
TGGCAAACTATATTGTGAACAGACACTTCTGGCCAGAAACACTTGCTGCATTTACGGGCTATTC
ATTAAATGAGATTGTGCCTTGCCTGAGTGAGCTGCATAAAGCATGCCTCAGTATACCCCATCGA
CCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTGCACGTGTCCCTCATGGAGC
CACCCGTAGTTCTTCCCCTGCAGTGAACGGGTCAGCTCAACAGCCACACCAGCAGGCTTACTCT
GACCTGTTACAGTTTTCTGCGGGTCGGGCCAACTAATGTCAGTTGTAGATGTCACCTTCAACAT
ATGAGTGTTAGGTTCTTTTAGACGTCGGTAGTTTATAATTTATATAGATATAGACAGGTATTTT
AAAAGAATAAACAACTTGCTGTGTGGCCATGTGTTGGGCCTCTTTACTAGTTGGCATAGCTGAC
ACAACAGGCATCTTAGTTGCGAGTTATATCGTAGCTGTGTCAACACCTTCCCAAGTTGGTTGCA
TAAGCATCCCACACTTTGATGATTAAGTGCTTTGAGGCGGCCAAGCCTTTCCTATCCCGTGAAG
CCCTCTGTAGACTGGTGAACAGAAGGAGAGAAGGGCCCGCTCCGATGGACTGTCAGGAAACCTG
AGTTGCTGTGAGTCCCAGCTTCCTGCTACAGCCTTCATCAGTAGAGAGGCAAGCATCCAAGGAT
CTCTCCGTTCGAGTATCTTCTGGGGATGGCACAATCCACGATCCATTCTCACCCAGAGGTATCA
TGGCCTTTTGTAAAGGGCTGCCATCTTGTCTATCCAGCTTGGATTCAGGTAAGAATCAGTCATG
AATTTTAACCACAGACGACACTTTGGGAAATAGGAAAAAAAAAGCAAGCTTCACTACCAAATGA
CACTCTCAGATAATGAATCCAGCACCTCTCTATTTCCCCTGGGAGAAATATATCCTGAACACTG
CCTGGGGTTGGAGGCGGGGGTTCGGGGTGTGAGAATGAAACGGAATGATTTCACCAGCTGGCCT
CCGTACTTGGCTTTCTCCTTCCATCTGGGCTCCAGCCTCTTCCTGGCTGCTGCCCATATTCAGA
CACACCCAGAAGGGTGCTTTACTGACCTCAGTCTAATCAAGTTGACTGTCAAGAATAACTATTC
CTTATATTGCTGAGACTGCCCAGTCCCCAGAGGCTGCTCTCGACTATCGTGCAAATGAGAGTCT
AGGAAGTAAAAGCAACACAAAGGAGCCATCTCTCTCCTCGGGACAGGAAGGGAAAAGAAAATGA
ATTTCTCAAGATTGTGTGGTGCTTGCTGGAGATTGAATGACTTTTAAAAATCATGCTGGAAACG
AGCAGGTTTGGGGTACACATGAGCCTCCTGGGCCATGTGCCCTTCCCTGAGGAGAAGCCTGTGT
CTGGATCATCTCTGGGGCTCACCCCAGAAGATTCTGTAGGGGGAAATACAGGTATTGTATGTCT
TTATATAGAAAAGATTAGAAAGGTTTTGGAAAAAAATGAGAGCTCATGACATTTTGTAGGTCTT
AAGCACTATTGAAATGTTAAATAAAAATATAGATATAAAACAAACAAAACACATATATAAAATG
TGTTTTTACATGCACACATACACACATTATACACACACACACACACACACACACACACACACAC
ACACACACACACACCTCTGTCAAAGAGTAACGAAAGCTAAATCAGGTATTTTGTGAAGGCTTTT
AAGCTTACAAGCTACTCAAAGGGCCAGTCATTCCCAAAGGTCACCCTTTCAAAGTTTTGATGGG
GAAACCAACATGTCCTAAAGCATTTTGATATTTGGCTATAGTCTCACAGGCAAGACCTGCACCG
GAATTAAATTCTCTGTACCAAG

hide sequence

RefSeq Acc Id:

XM_039102010 ⟹ XP_038957938

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,231,738 - 139,242,746 (-)	NCBI

RefSeq Acc Id:

XM_039102011 ⟹ XP_038957939

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,231,738 - 139,242,745 (-)	NCBI

RefSeq Acc Id:

XM_039102012 ⟹ XP_038957940

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,231,738 - 139,242,745 (-)	NCBI

RefSeq Acc Id:

XM_039102013 ⟹ XP_038957941

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,231,738 - 139,242,745 (-)	NCBI

RefSeq Acc Id:

XM_039102014 ⟹ XP_038957942

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	139,231,738 - 139,278,066 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011949	(Get FASTA)	NCBI Sequence Viewer
	XP_006232421	(Get FASTA)	NCBI Sequence Viewer
	XP_006232422	(Get FASTA)	NCBI Sequence Viewer
	XP_006232423	(Get FASTA)	NCBI Sequence Viewer
	XP_008759209	(Get FASTA)	NCBI Sequence Viewer
	XP_008759210	(Get FASTA)	NCBI Sequence Viewer
	XP_017446238	(Get FASTA)	NCBI Sequence Viewer
	XP_017446239	(Get FASTA)	NCBI Sequence Viewer
	XP_038957938	(Get FASTA)	NCBI Sequence Viewer
	XP_038957939	(Get FASTA)	NCBI Sequence Viewer
	XP_038957940	(Get FASTA)	NCBI Sequence Viewer
	XP_038957941	(Get FASTA)	NCBI Sequence Viewer
	XP_038957942	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79234	(Get FASTA)	NCBI Sequence Viewer
	CBX86205	(Get FASTA)	NCBI Sequence Viewer
	EDM14909	(Get FASTA)	NCBI Sequence Viewer
	EDM14910	(Get FASTA)	NCBI Sequence Viewer
	Q6AY13	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001011949 ⟸ NM_001011949

- UniProtKB:

Q6AY13 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MRRHSSKSGVALPPVGQGPDACQMLTRAQLGQDPPQRTVLGVLTENEQYRRACGQEIATIRCFS
GSENVFPAAGKKVLPDNGVSEPAKHGFDIYMDDPEQGDRDSCPGREGIVFEDVYEVDTSMLKSD
LHFLLDFNTVSPMLVDSTAHAQSEEATDFGSDVINVTEYAEEIHRYLREAEVRHRPKAHYMRKQ
PDITEGMRAILVDWLVEVGEEYKLRTETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKY
EEIYPPDVDEFVYITDDTYTKRQLLRMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENL
AKYVAELSLLEADPFLKYLPSLVAAAAYCLANYIVNRHFWPETLAAFTGYSLNEIVPCLSELHK
ACLSIPHRPQQAIREKYKASKYLHVSLMEPPVVLPLQ

hide sequence

RefSeq Acc Id:	XP_006232423 ⟸ XM_006232361
- Peptide Label:	isoform X1
- UniProtKB:	Q6AY13 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRRHSSKSGVALPPVGQGPDACQMLTRAQLGQDPPQRTVLGVLTENEQYRRACGQEIATIRCFS GSENVFPAAGKKVLPDNGVSEPAKHGFDIYMDDPEQGDRDSCPGREGIVFEDVYEVDTSMLKSD LHFLLDFNTVSPMLVDSTAHAQSEEATDFGSDVINVTEYAEEIHRYLREAEVRHRPKAHYMRKQ PDITEGMRAILVDWLVEVGEEYKLRTETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKY EEIYPPDVDEFVYITDDTYTKRQLLRMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENL AKYVAELSLLEADPFLKYLPSLVAAAAYCLANYIVNRHFWPETLAAFTGYSLNEIVPCLSELHK ACLSIPHRPQQAIREKYKASKYLHVSLMEPPVVLPLQ hide sequence

RefSeq Acc Id:	XP_006232422 ⟸ XM_006232360
- Peptide Label:	isoform X1
- UniProtKB:	Q6AY13 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRRHSSKSGVALPPVGQGPDACQMLTRAQLGQDPPQRTVLGVLTENEQYRRACGQEIATIRCFS GSENVFPAAGKKVLPDNGVSEPAKHGFDIYMDDPEQGDRDSCPGREGIVFEDVYEVDTSMLKSD LHFLLDFNTVSPMLVDSTAHAQSEEATDFGSDVINVTEYAEEIHRYLREAEVRHRPKAHYMRKQ PDITEGMRAILVDWLVEVGEEYKLRTETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKY EEIYPPDVDEFVYITDDTYTKRQLLRMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENL AKYVAELSLLEADPFLKYLPSLVAAAAYCLANYIVNRHFWPETLAAFTGYSLNEIVPCLSELHK ACLSIPHRPQQAIREKYKASKYLHVSLMEPPVVLPLQ hide sequence

RefSeq Acc Id:	XP_006232421 ⟸ XM_006232359
- Peptide Label:	isoform X1
- UniProtKB:	Q6AY13 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRRHSSKSGVALPPVGQGPDACQMLTRAQLGQDPPQRTVLGVLTENEQYRRACGQEIATIRCFS GSENVFPAAGKKVLPDNGVSEPAKHGFDIYMDDPEQGDRDSCPGREGIVFEDVYEVDTSMLKSD LHFLLDFNTVSPMLVDSTAHAQSEEATDFGSDVINVTEYAEEIHRYLREAEVRHRPKAHYMRKQ PDITEGMRAILVDWLVEVGEEYKLRTETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKY EEIYPPDVDEFVYITDDTYTKRQLLRMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENL AKYVAELSLLEADPFLKYLPSLVAAAAYCLANYIVNRHFWPETLAAFTGYSLNEIVPCLSELHK ACLSIPHRPQQAIREKYKASKYLHVSLMEPPVVLPLQ hide sequence

RefSeq Acc Id:	XP_008759209 ⟸ XM_008760987
- Peptide Label:	isoform X1
- UniProtKB:	Q6AY13 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRRHSSKSGVALPPVGQGPDACQMLTRAQLGQDPPQRTVLGVLTENEQYRRACGQEIATIRCFS GSENVFPAAGKKVLPDNGVSEPAKHGFDIYMDDPEQGDRDSCPGREGIVFEDVYEVDTSMLKSD LHFLLDFNTVSPMLVDSTAHAQSEEATDFGSDVINVTEYAEEIHRYLREAEVRHRPKAHYMRKQ PDITEGMRAILVDWLVEVGEEYKLRTETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKY EEIYPPDVDEFVYITDDTYTKRQLLRMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENL AKYVAELSLLEADPFLKYLPSLVAAAAYCLANYIVNRHFWPETLAAFTGYSLNEIVPCLSELHK ACLSIPHRPQQAIREKYKASKYLHVSLMEPPVVLPLQ hide sequence

RefSeq Acc Id:	XP_008759210 ⟸ XM_008760988
- Peptide Label:	isoform X1
- UniProtKB:	Q6AY13 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRRHSSKSGVALPPVGQGPDACQMLTRAQLGQDPPQRTVLGVLTENEQYRRACGQEIATIRCFS GSENVFPAAGKKVLPDNGVSEPAKHGFDIYMDDPEQGDRDSCPGREGIVFEDVYEVDTSMLKSD LHFLLDFNTVSPMLVDSTAHAQSEEATDFGSDVINVTEYAEEIHRYLREAEVRHRPKAHYMRKQ PDITEGMRAILVDWLVEVGEEYKLRTETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKY EEIYPPDVDEFVYITDDTYTKRQLLRMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENL AKYVAELSLLEADPFLKYLPSLVAAAAYCLANYIVNRHFWPETLAAFTGYSLNEIVPCLSELHK ACLSIPHRPQQAIREKYKASKYLHVSLMEPPVVLPLQ hide sequence

RefSeq Acc Id:	XP_017446238 ⟸ XM_017590749
- Peptide Label:	isoform X1
- UniProtKB:	Q6AY13 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRRHSSKSGVALPPVGQGPDACQMLTRAQLGQDPPQRTVLGVLTENEQYRRACGQEIATIRCFS GSENVFPAAGKKVLPDNGVSEPAKHGFDIYMDDPEQGDRDSCPGREGIVFEDVYEVDTSMLKSD LHFLLDFNTVSPMLVDSTAHAQSEEATDFGSDVINVTEYAEEIHRYLREAEVRHRPKAHYMRKQ PDITEGMRAILVDWLVEVGEEYKLRTETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKY EEIYPPDVDEFVYITDDTYTKRQLLRMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENL AKYVAELSLLEADPFLKYLPSLVAAAAYCLANYIVNRHFWPETLAAFTGYSLNEIVPCLSELHK ACLSIPHRPQQAIREKYKASKYLHVSLMEPPVVLPLQ hide sequence

RefSeq Acc Id:	XP_017446239 ⟸ XM_017590750
- Peptide Label:	isoform X1
- UniProtKB:	Q6AY13 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRRHSSKSGVALPPVGQGPDACQMLTRAQLGQDPPQRTVLGVLTENEQYRRACGQEIATIRCFS GSENVFPAAGKKVLPDNGVSEPAKHGFDIYMDDPEQGDRDSCPGREGIVFEDVYEVDTSMLKSD LHFLLDFNTVSPMLVDSTAHAQSEEATDFGSDVINVTEYAEEIHRYLREAEVRHRPKAHYMRKQ PDITEGMRAILVDWLVEVGEEYKLRTETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKY EEIYPPDVDEFVYITDDTYTKRQLLRMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENL AKYVAELSLLEADPFLKYLPSLVAAAAYCLANYIVNRHFWPETLAAFTGYSLNEIVPCLSELHK ACLSIPHRPQQAIREKYKASKYLHVSLMEPPVVLPLQ hide sequence

RefSeq Acc Id:

ENSRNOP00000039931 ⟸ ENSRNOT00000040002

RefSeq Acc Id:	XP_038957942 ⟸ XM_039102014
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038957938 ⟸ XM_039102010
- Peptide Label:	isoform X1
- UniProtKB:	Q6AY13 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038957941 ⟸ XM_039102013
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038957940 ⟸ XM_039102012
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038957939 ⟸ XM_039102011
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZLN2 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000078779 ⟸ ENSRNOT00000095893

Protein Domains

Cyclin N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AY13-F1-model_v2	AlphaFold	Q6AY13	1-421	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310639	AgrOrtholog
BioCyc Gene	G2FUF-53069	BioCyc
Ensembl Genes	ENSRNOG00000014052	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000039931	ENTREZGENE
	ENSRNOP00000039931.3	UniProtKB/Swiss-Prot
	ENSRNOP00000078779	ENTREZGENE
	ENSRNOP00000078779.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000040002	ENTREZGENE
	ENSRNOT00000040002.5	UniProtKB/Swiss-Prot
	ENSRNOT00000095893	ENTREZGENE
	ENSRNOT00000095893.1	UniProtKB/TrEMBL
Gene3D-CATH	Cyclin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7132591	IMAGE-MGC_LOAD
InterPro	Cyclin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin-A_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin_C-dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:295052	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94315	IMAGE-MGC_LOAD
NCBI Gene	295052	ENTREZGENE
PANTHER	CYCLIN-A1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10177	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Cyclin_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin_N2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	CCNA1	RGD
PhenoGen	Ccna1	PhenoGen
PROSITE	CYCLINS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	CYCLIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF47954	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZLN2	ENTREZGENE, UniProtKB/TrEMBL
	CCNA1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Ccna1	cyclin A1	Ccna1_predicted	cyclin A1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Ccna1_predicted	cyclin A1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)