Rabepk (Rab9 effector protein with kelch motifs) - Rat Genome Database

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Gene: Rabepk (Rab9 effector protein with kelch motifs) Rattus norvegicus
Analyze
Symbol: Rabepk
Name: Rab9 effector protein with kelch motifs
RGD ID: 1310612
Description: Predicted to be located in intracellular membrane-bounded organelle. Orthologous to human RABEPK (Rab9 effector protein with kelch motifs); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9530020d24rik; LOC296649; Rab9 effector p40; RGD1310612; similar to RIKEN cDNA 9530020D24
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8338,460,205 - 38,481,077 (-)NCBIGRCr8
mRatBN7.2318,061,299 - 18,083,191 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl318,061,574 - 18,083,191 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx321,130,771 - 21,151,000 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0329,715,795 - 29,736,024 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0327,969,432 - 27,989,871 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0313,845,352 - 13,865,843 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl313,845,361 - 13,865,843 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0319,164,922 - 19,185,412 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4313,790,808 - 13,811,327 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1313,687,180 - 13,707,699 (-)NCBI
Celera312,783,843 - 12,804,301 (-)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
Rabepk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8338,460,205 - 38,481,077 (-)NCBIGRCr8
mRatBN7.2318,061,299 - 18,083,191 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl318,061,574 - 18,083,191 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx321,130,771 - 21,151,000 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0329,715,795 - 29,736,024 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0327,969,432 - 27,989,871 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0313,845,352 - 13,865,843 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl313,845,361 - 13,865,843 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0319,164,922 - 19,185,412 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4313,790,808 - 13,811,327 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1313,687,180 - 13,707,699 (-)NCBI
Celera312,783,843 - 12,804,301 (-)NCBICelera
Cytogenetic Map3p11NCBI
RABEPK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389125,200,542 - 125,234,161 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9125,200,542 - 125,234,161 (+)EnsemblGRCh38hg38GRCh38
GRCh379127,962,821 - 127,996,440 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369127,002,874 - 127,036,259 (+)NCBINCBI36Build 36hg18NCBI36
Celera998,610,755 - 98,644,425 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef997,575,423 - 97,609,024 (+)NCBIHuRef
CHM1_19128,111,877 - 128,146,185 (+)NCBICHM1_1
T2T-CHM13v2.09137,398,878 - 137,432,478 (+)NCBIT2T-CHM13v2.0
Rabepk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39234,662,946 - 34,690,200 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl234,667,568 - 34,689,924 (-)EnsemblGRCm39 Ensembl
GRCm38234,774,609 - 34,800,196 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl234,777,556 - 34,799,912 (-)EnsemblGRCm38mm10GRCm38
MGSCv37234,634,186 - 34,655,311 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36234,600,675 - 34,621,800 (-)NCBIMGSCv36mm8
Celera234,479,143 - 34,500,323 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.94NCBI
Rabepk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,061,838 - 3,091,020 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,061,838 - 3,096,693 (-)NCBIChiLan1.0ChiLan1.0
RABEPK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,129,490 - 14,167,619 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,131,838 - 14,169,967 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0996,311,269 - 96,349,433 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,836,057 - 124,863,049 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,836,057 - 124,863,049 (+)Ensemblpanpan1.1panPan2
RABEPK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1957,857,269 - 57,877,333 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl957,857,269 - 57,883,761 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,057,134 - 57,077,183 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0958,777,947 - 58,797,659 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl958,777,947 - 58,809,553 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,536,110 - 57,556,338 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0957,852,819 - 57,873,069 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0957,943,499 - 57,963,812 (-)NCBIUU_Cfam_GSD_1.0
Rabepk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,552,324 - 193,578,082 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,324,168 - 13,346,638 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,320,988 - 13,346,609 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABEPK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,905,210 - 265,929,061 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,898,306 - 265,929,062 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,672,840 - 299,702,585 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RABEPK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11212,923,405 - 12,953,907 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1212,927,976 - 12,951,249 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660793,152,338 - 3,187,313 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rabepk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247609,990,831 - 10,018,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247609,992,321 - 10,025,015 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rabepk
95 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:35
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000025194
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat

Markers in Region
RH133690  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2318,062,727 - 18,062,928 (+)MAPPERmRatBN7.2
Rnor_6.0313,845,389 - 13,845,589NCBIRnor6.0
Rnor_5.0319,164,959 - 19,165,159UniSTSRnor5.0
RGSC_v3.4313,790,837 - 13,791,037UniSTSRGSC3.4
Celera312,783,872 - 12,784,072UniSTS
RH 3.4 Map3151.9UniSTS
Cytogenetic Map3p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 20 23 14 18 14 74 32 41 11
Low 23 34 27 1 27 8 11 3 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC097415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000025194   ⟹   ENSRNOP00000025194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl318,062,700 - 18,083,191 (-)Ensembl
Rnor_6.0 Ensembl313,845,361 - 13,865,843 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100359   ⟹   ENSRNOP00000091166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl318,061,574 - 18,082,109 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118180   ⟹   ENSRNOP00000079718
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl318,062,700 - 18,083,191 (-)Ensembl
RefSeq Acc Id: NM_001024871   ⟹   NP_001020042
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,480,688 (-)NCBI
mRatBN7.2318,062,699 - 18,083,191 (-)NCBI
Rnor_6.0313,845,360 - 13,865,843 (-)NCBI
Rnor_5.0319,164,922 - 19,185,412 (-)NCBI
RGSC_v3.4313,790,808 - 13,811,327 (-)RGD
Celera312,783,843 - 12,804,301 (-)RGD
Sequence:
RefSeq Acc Id: XM_006233957   ⟹   XP_006234019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,473 (-)NCBI
mRatBN7.2318,061,299 - 18,082,003 (-)NCBI
Rnor_6.0313,845,352 - 13,865,571 (-)NCBI
Rnor_5.0319,164,922 - 19,185,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233958   ⟹   XP_006234020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,363 (-)NCBI
mRatBN7.2318,061,302 - 18,081,792 (-)NCBI
Rnor_6.0313,845,352 - 13,864,534 (-)NCBI
Rnor_5.0319,164,922 - 19,185,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233964   ⟹   XP_006234026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,479 (-)NCBI
mRatBN7.2318,061,299 - 18,082,007 (-)NCBI
Rnor_6.0313,845,352 - 13,865,574 (-)NCBI
Rnor_5.0319,164,922 - 19,185,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233967   ⟹   XP_006234029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,364 (-)NCBI
mRatBN7.2318,061,302 - 18,081,797 (-)NCBI
Rnor_6.0313,845,352 - 13,864,534 (-)NCBI
Rnor_5.0319,164,922 - 19,185,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761725   ⟹   XP_008759947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,476,745 (-)NCBI
mRatBN7.2318,061,299 - 18,079,246 (-)NCBI
Rnor_6.0313,845,352 - 13,865,575 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761728   ⟹   XP_008759950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,473 (-)NCBI
mRatBN7.2318,061,299 - 18,082,005 (-)NCBI
Rnor_6.0313,845,352 - 13,865,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761732   ⟹   XP_008759954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,476,745 (-)NCBI
mRatBN7.2318,061,299 - 18,079,246 (-)NCBI
Rnor_6.0313,845,352 - 13,865,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761735   ⟹   XP_008759957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,476,745 (-)NCBI
mRatBN7.2318,061,299 - 18,079,246 (-)NCBI
Rnor_6.0313,845,352 - 13,865,575 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039104770   ⟹   XP_038960698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,481,077 (-)NCBI
mRatBN7.2318,061,299 - 18,082,078 (-)NCBI
RefSeq Acc Id: XM_039104771   ⟹   XP_038960699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,476,745 (-)NCBI
mRatBN7.2318,061,299 - 18,079,246 (-)NCBI
RefSeq Acc Id: XM_039104772   ⟹   XP_038960700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,476,745 (-)NCBI
mRatBN7.2318,061,299 - 18,079,246 (-)NCBI
RefSeq Acc Id: XM_039104773   ⟹   XP_038960701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,481,077 (-)NCBI
mRatBN7.2318,061,299 - 18,082,078 (-)NCBI
RefSeq Acc Id: XM_039104776   ⟹   XP_038960704
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,476,745 (-)NCBI
mRatBN7.2318,061,299 - 18,079,246 (-)NCBI
RefSeq Acc Id: XM_039104778   ⟹   XP_038960706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,361 (-)NCBI
mRatBN7.2318,061,302 - 18,081,784 (-)NCBI
RefSeq Acc Id: XM_039104779   ⟹   XP_038960707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,360 (-)NCBI
mRatBN7.2318,061,302 - 18,081,780 (-)NCBI
RefSeq Acc Id: XM_063283512   ⟹   XP_063139582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,404 (-)NCBI
RefSeq Acc Id: XM_063283513   ⟹   XP_063139583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,481,077 (-)NCBI
RefSeq Acc Id: XM_063283514   ⟹   XP_063139584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,471 (-)NCBI
RefSeq Acc Id: XM_063283515   ⟹   XP_063139585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,475 (-)NCBI
RefSeq Acc Id: XM_063283516   ⟹   XP_063139586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,476 (-)NCBI
RefSeq Acc Id: XM_063283517   ⟹   XP_063139587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,477 (-)NCBI
RefSeq Acc Id: XM_063283518   ⟹   XP_063139588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,479,482 (-)NCBI
RefSeq Acc Id: XM_063283519   ⟹   XP_063139589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,460,205 - 38,476,530 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001020042 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234019 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234020 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234026 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234029 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759947 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759950 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759954 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759957 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960698 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960699 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960700 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960701 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960704 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960706 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960707 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139582 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139583 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139584 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139585 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139586 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139587 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139588 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139589 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH97415 (Get FASTA)   NCBI Sequence Viewer  
  EDL93168 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025194
  ENSRNOP00000025194.6
  ENSRNOP00000079718.1
  ENSRNOP00000091166
  ENSRNOP00000091166.1
GenBank Protein Q4V8F4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001020042   ⟸   NM_001024871
- UniProtKB: A0A8L2QDI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234026   ⟸   XM_006233964
- Peptide Label: isoform X13
- UniProtKB: A0A8I6ABJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234019   ⟸   XM_006233957
- Peptide Label: isoform X2
- UniProtKB: Q4V8F4 (UniProtKB/Swiss-Prot),   A6JUC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234029   ⟸   XM_006233967
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_006234020   ⟸   XM_006233958
- Peptide Label: isoform X2
- UniProtKB: Q4V8F4 (UniProtKB/Swiss-Prot),   A6JUC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759954   ⟸   XM_008761732
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008759957   ⟸   XM_008761735
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_008759947   ⟸   XM_008761725
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008759950   ⟸   XM_008761728
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000025194   ⟸   ENSRNOT00000025194
RefSeq Acc Id: XP_038960701   ⟸   XM_039104773
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038960698   ⟸   XM_039104770
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038960704   ⟸   XM_039104776
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038960699   ⟸   XM_039104771
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038960700   ⟸   XM_039104772
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038960706   ⟸   XM_039104778
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038960707   ⟸   XM_039104779
- Peptide Label: isoform X20
RefSeq Acc Id: ENSRNOP00000091166   ⟸   ENSRNOT00000100359
RefSeq Acc Id: ENSRNOP00000079718   ⟸   ENSRNOT00000118180
RefSeq Acc Id: XP_063139583   ⟸   XM_063283513
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063139588   ⟸   XM_063283518
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063139587   ⟸   XM_063283517
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063139586   ⟸   XM_063283516
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063139585   ⟸   XM_063283515
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063139584   ⟸   XM_063283514
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063139582   ⟸   XM_063283512
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063139589   ⟸   XM_063283519
- Peptide Label: isoform X19

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V8F4-F1-model_v2 AlphaFold Q4V8F4 1-372 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310612 AgrOrtholog
BioCyc Gene G2FUF-50080 BioCyc
Ensembl Genes ENSRNOG00000018591 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025194 ENTREZGENE
  ENSRNOT00000025194.6 UniProtKB/TrEMBL
  ENSRNOT00000100359.1 UniProtKB/TrEMBL
  ENSRNOT00000118180.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.80 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7454340 IMAGE-MGC_LOAD
InterPro Gal_Oxase/kelch_b-propeller UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kelch_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kelch_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:296649 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:114460 IMAGE-MGC_LOAD
NCBI Gene 296649 ENTREZGENE
PANTHER RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS UniProtKB/Swiss-Prot
  RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS UniProtKB/Swiss-Prot
  RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS UniProtKB/TrEMBL
  RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS UniProtKB/TrEMBL
Pfam Kelch_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kelch_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kelch_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rabepk PhenoGen
RatGTEx ENSRNOG00000018591 RatGTEx
Superfamily-SCOP Galactose oxidase, central domain UniProtKB/TrEMBL
  SSF117281 UniProtKB/TrEMBL
  SSF50965 UniProtKB/Swiss-Prot
UniProt A0A8I5ZP58_RAT UniProtKB/TrEMBL
  A0A8I6ABJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QDI4 ENTREZGENE, UniProtKB/TrEMBL
  A6JUC9 ENTREZGENE, UniProtKB/TrEMBL
  Q4V8F4 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Rabepk  Rab9 effector protein with kelch motifs  RGD1310612  similar to RIKEN cDNA 9530020D24  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1310612  similar to RIKEN cDNA 9530020D24  RGD1310612_predicted  similar to RIKEN cDNA 9530020D24 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310612_predicted  similar to RIKEN cDNA 9530020D24 (predicted)  LOC296649_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC296649_predicted  similar to RIKEN cDNA 9530020D24 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL