Gatad2a (GATA zinc finger domain containing 2A) - Rat Genome Database

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Gene: Gatad2a (GATA zinc finger domain containing 2A) Rattus norvegicus
Analyze
Symbol: Gatad2a
Name: GATA zinc finger domain containing 2A
RGD ID: 1310596
Description: Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in chromatin remodeling and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including blood vessel development; chordate embryonic development; and embryonic body morphogenesis. Predicted to be located in nucleoplasm. Predicted to be part of NuRD complex. Orthologous to human GATAD2A (GATA zinc finger domain containing 2A); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC290669; MGC109147; p66 alpha; RGD1310596; similar to p66 alpha homolog; transcriptional repressor p66-alpha
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21619,429,578 - 19,520,320 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,429,578 - 19,519,587 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1619,469,767 - 19,560,312 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,601,537 - 20,698,495 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,522,741 - 19,613,295 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01621,177,793 - 21,267,768 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1621,178,138 - 21,268,504 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01621,093,916 - 21,184,843 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,913,558 - 20,004,379 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,994,115 - 20,003,487 (+)NCBI
Celera1619,618,575 - 19,708,686 (+)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-trichloroethane  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
amitrole  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
C60 fullerene  (EXP)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sulfadimethoxine  (EXP)
sulindac  (EXP)
sunitinib  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (ISO)
NuRD complex  (IBA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The nucleosome remodeling and deacetylase complex in development and disease. Basta J and Rauchman M, Transl Res. 2014 May 10. pii: S1931-5244(14)00166-2. doi: 10.1016/j.trsl.2014.05.003.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12183469   PMID:17565372  


Genomics

Comparative Map Data
Gatad2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21619,429,578 - 19,520,320 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,429,578 - 19,519,587 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1619,469,767 - 19,560,312 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,601,537 - 20,698,495 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,522,741 - 19,613,295 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01621,177,793 - 21,267,768 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1621,178,138 - 21,268,504 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01621,093,916 - 21,184,843 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,913,558 - 20,004,379 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,994,115 - 20,003,487 (+)NCBI
Celera1619,618,575 - 19,708,686 (+)NCBICelera
Cytogenetic Map16p14NCBI
GATAD2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381919,385,843 - 19,508,932 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1919,385,826 - 19,508,932 (+)EnsemblGRCh38hg38GRCh38
GRCh371919,496,652 - 19,619,741 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361919,430,401 - 19,478,789 (+)NCBINCBI36Build 36hg18NCBI36
Celera1919,400,702 - 19,523,801 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1919,058,971 - 19,181,846 (+)NCBIHuRef
CHM1_11919,497,349 - 19,620,430 (+)NCBICHM1_1
T2T-CHM13v2.01919,523,327 - 19,646,416 (+)NCBIT2T-CHM13v2.0
Gatad2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,359,719 - 70,450,093 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl870,359,726 - 70,449,034 (-)EnsemblGRCm39 Ensembl
GRCm38869,907,069 - 69,996,402 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl869,907,076 - 69,996,384 (-)EnsemblGRCm38mm10GRCm38
MGSCv37872,430,968 - 72,520,278 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36872,837,459 - 72,925,353 (-)NCBIMGSCv36mm8
Celera872,466,875 - 72,555,282 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.06NCBI
Gatad2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,439,594 - 2,506,538 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555242,439,594 - 2,506,539 (-)NCBIChiLan1.0ChiLan1.0
GATAD2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11923,254,888 - 23,377,728 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01918,824,615 - 18,947,351 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11919,824,575 - 19,942,670 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,873,119 - 19,942,670 (+)Ensemblpanpan1.1panPan2
GATAD2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12043,736,471 - 43,853,505 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2043,739,849 - 43,846,370 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2043,654,024 - 43,770,694 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02044,224,437 - 44,341,415 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,226,432 - 44,334,257 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12043,462,030 - 43,578,906 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02043,871,448 - 43,988,560 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02044,147,086 - 44,263,794 (-)NCBIUU_Cfam_GSD_1.0
Gatad2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118202,409,830 - 202,525,336 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365961,958,844 - 2,074,707 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365961,958,961 - 2,074,471 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GATAD2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,415,750 - 58,517,162 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,415,749 - 58,517,308 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2258,210,083 - 58,282,240 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GATAD2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,847,310 - 17,971,219 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl617,847,307 - 17,971,220 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660741,332,270 - 1,458,474 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gatad2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249082,230,581 - 2,308,579 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249082,213,661 - 2,305,877 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gatad2a
329 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:403
Count of miRNA genes:213
Interacting mature miRNAs:248
Transcripts:ENSRNOT00000027943
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat

Markers in Region
RH126832  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21619,518,382 - 19,518,621 (+)MAPPERmRatBN7.2
Rnor_6.01621,266,564 - 21,266,802NCBIRnor6.0
Rnor_5.01621,182,906 - 21,183,144UniSTSRnor5.0
RGSC_v3.41620,003,175 - 20,003,413UniSTSRGSC3.4
Celera1619,707,482 - 19,707,720UniSTS
Cytogenetic Map16p14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 56 40 19 40 4 7 74 35 41 11 4
Low 7 1 1 1 4 4 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000027943   ⟹   ENSRNOP00000027943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,429,578 - 19,519,587 (+)Ensembl
Rnor_6.0 Ensembl1621,178,138 - 21,268,504 (+)Ensembl
RefSeq Acc Id: NM_001013881   ⟹   NP_001013903
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21619,429,578 - 19,519,587 (+)NCBI
Rnor_6.01621,177,793 - 21,267,768 (+)NCBI
Rnor_5.01621,093,916 - 21,184,843 (+)NCBI
RGSC_v3.41619,913,558 - 20,004,379 (+)RGD
Celera1619,618,575 - 19,708,686 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252887   ⟹   XP_006252949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21619,450,175 - 19,520,320 (+)NCBI
Rnor_6.01621,198,478 - 21,267,076 (+)NCBI
Rnor_5.01621,093,916 - 21,184,843 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600034   ⟹   XP_017455523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21619,450,169 - 19,520,320 (+)NCBI
Rnor_6.01621,198,467 - 21,267,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600035   ⟹   XP_017455524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21619,429,617 - 19,520,320 (+)NCBI
Rnor_6.01621,177,838 - 21,267,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094339   ⟹   XP_038950267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21619,429,618 - 19,520,320 (+)NCBI
RefSeq Acc Id: XM_039094340   ⟹   XP_038950268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21619,465,972 - 19,520,320 (+)NCBI
RefSeq Acc Id: XM_039094341   ⟹   XP_038950269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21619,450,169 - 19,520,320 (+)NCBI
RefSeq Acc Id: XM_039094342   ⟹   XP_038950270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21619,450,169 - 19,517,516 (+)NCBI
RefSeq Acc Id: XM_039094343   ⟹   XP_038950271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21619,450,169 - 19,520,320 (+)NCBI
RefSeq Acc Id: XM_039094344   ⟹   XP_038950272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21619,450,169 - 19,517,516 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001013903   ⟸   NM_001013881
- UniProtKB: A6KA99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252949   ⟸   XM_006252887
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017455524   ⟸   XM_017600035
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017455523   ⟸   XM_017600034
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000027943   ⟸   ENSRNOT00000027943
RefSeq Acc Id: XP_038950267   ⟸   XM_039094339
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950271   ⟸   XM_039094343
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038950269   ⟸   XM_039094341
- Peptide Label: isoform X2
- UniProtKB: G3V8R7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950272   ⟸   XM_039094344
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038950270   ⟸   XM_039094342
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950268   ⟸   XM_039094340
- Peptide Label: isoform X1
Protein Domains
Transcriptional repressor p66 coiled-coil MBD2-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V8R7-F1-model_v2 AlphaFold G3V8R7 1-629 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700049
Promoter ID:EPDNEW_R10573
Type:single initiation site
Name:Gatad2a_1
Description:GATA zinc finger domain containing 2A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01621,178,198 - 21,178,258EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310596 AgrOrtholog
BioCyc Gene G2FUF-11749 BioCyc
Ensembl Genes ENSRNOG00000022173 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027943 ENTREZGENE
  ENSRNOT00000027943.7 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.1650 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7383529 IMAGE-MGC_LOAD
InterPro P66 UniProtKB/TrEMBL
  P66_CC UniProtKB/TrEMBL
MGC_CLONE MGC:109147 IMAGE-MGC_LOAD
NCBI Gene 290669 ENTREZGENE
PANTHER PTHR13455 UniProtKB/TrEMBL
  TRANSCRIPTIONAL REPRESSOR P66-ALPHA UniProtKB/TrEMBL
Pfam P66_CC UniProtKB/TrEMBL
PhenoGen Gatad2a PhenoGen
RatGTEx ENSRNOG00000022173 RatGTEx
UniProt A6KA99 ENTREZGENE, UniProtKB/TrEMBL
  G3V8R7 ENTREZGENE, UniProtKB/TrEMBL
  Q5EB93_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Gatad2a  GATA zinc finger domain containing 2A  RGD1310596  similar to p66 alpha homolog  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1310596  similar to p66 alpha homolog  RGD1310596_predicted  similar to p66 alpha homolog (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310596_predicted  similar to p66 alpha homolog (predicted)  LOC290669_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC290669_predicted  similar to p66 alpha homolog (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL