Ranbp1 (RAN binding protein 1) - Rat Genome Database

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Gene: Ranbp1 (RAN binding protein 1) Rattus norvegicus
Analyze
Symbol: Ranbp1
Name: RAN binding protein 1
RGD ID: 1310521
Description: Predicted to enable GDP-dissociation inhibitor activity. Predicted to contribute to GTPase activator activity. Involved in several processes, including cellular response to leptomycin B; positive regulation of neuron projection development; and response to calcium ion. Located in axon cytoplasm. Biomarker of myocardial infarction and sciatic neuropathy. Orthologous to human RANBP1 (RAN binding protein 1); PARTICIPATES IN CRM1 export pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC360739; ran-specific GTPase-activating protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,246,912 - 96,255,145 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1196,246,740 - 96,255,145 (+)EnsemblGRCr8
mRatBN7.21182,742,603 - 82,750,836 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,742,600 - 82,750,838 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1191,470,989 - 91,479,222 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,132,217 - 84,140,450 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01183,185,732 - 83,193,965 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01186,890,585 - 86,898,818 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,890,585 - 86,898,818 (+)Ensemblrn6Rnor6.0
Rnor_5.01189,984,523 - 89,992,756 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41184,736,402 - 84,744,635 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1181,519,608 - 81,527,841 (+)NCBICelera
RGSC_v3.11184,776,987 - 84,785,231 (+)NCBI
Cytogenetic Map11q23NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
Abemaciclib  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
atrazine  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bicalutamide  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
diquat  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP,ISO)
fenthion  (ISO)
furfural  (ISO)
ivermectin  (ISO)
leptomycin B  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
mercury dichloride  (EXP)
methimazole  (EXP)
methotrexate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
ochratoxin A  (EXP,ISO)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorododecanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
phenylephrine  (EXP)
piroxicam  (ISO)
quinoline  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sarin  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sulfadimethoxine  (EXP)
sulindac sulfide  (ISO)
sunitinib  (ISO)
T-2 toxin  (EXP)
tamoxifen  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trichostatin A  (EXP)
trimellitic anhydride  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Nuclear pore rearrangements and nuclear trafficking in cardiomyocytes from rat and human failing hearts. Chahine MN, etal., Cardiovasc Res. 2015 Jan 1;105(1):31-43. doi: 10.1093/cvr/cvu218. Epub 2014 Oct 23.
2. RanGTP targets p97 to RanBP2, a filamentous protein localized at the cytoplasmic periphery of the nuclear pore complex. Delphin C, etal., Mol Biol Cell. 1997 Dec;8(12):2379-90.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Postage for the messenger: designating routes for nuclear mRNA export. Natalizio BJ and Wente SR, Trends Cell Biol. 2013 Aug;23(8):365-73. doi: 10.1016/j.tcb.2013.03.006. Epub 2013 Apr 11.
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. Involvement of CRM1, a nuclear export receptor, in mRNA export in mammalian cells and fission yeast. Watanabe M, etal., Genes Cells. 1999 May;4(5):291-7.
10. Localized regulation of axonal RanGTPase controls retrograde injury signaling in peripheral nerve. Yudin D, etal., Neuron. 2008 Jul 31;59(2):241-52. doi: 10.1016/j.neuron.2008.05.029.
Additional References at PubMed
PMID:7616957   PMID:12840069   PMID:25002582   PMID:25468996   PMID:25743254  


Genomics

Comparative Map Data
Ranbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,246,912 - 96,255,145 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1196,246,740 - 96,255,145 (+)EnsemblGRCr8
mRatBN7.21182,742,603 - 82,750,836 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,742,600 - 82,750,838 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1191,470,989 - 91,479,222 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,132,217 - 84,140,450 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01183,185,732 - 83,193,965 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01186,890,585 - 86,898,818 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,890,585 - 86,898,818 (+)Ensemblrn6Rnor6.0
Rnor_5.01189,984,523 - 89,992,756 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41184,736,402 - 84,744,635 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1181,519,608 - 81,527,841 (+)NCBICelera
RGSC_v3.11184,776,987 - 84,785,231 (+)NCBI
Cytogenetic Map11q23NCBI
RANBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382220,116,104 - 20,127,355 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2220,115,938 - 20,127,355 (+)Ensemblhg38GRCh38
GRCh372220,103,627 - 20,114,878 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,485,024 - 18,494,704 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342218,479,577 - 18,489,258NCBI
Celera223,957,074 - 3,966,754 (+)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef223,724,122 - 3,735,532 (+)NCBIHuRef
CHM1_12220,103,145 - 20,114,571 (+)NCBICHM1_1
T2T-CHM13v2.02220,495,154 - 20,506,390 (+)NCBIT2T-CHM13v2.0
Ranbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,057,843 - 18,066,558 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1618,057,648 - 18,066,596 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381618,239,979 - 18,248,694 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,239,784 - 18,248,732 (-)Ensemblmm10GRCm38
MGSCv371618,240,072 - 18,248,787 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361618,153,377 - 18,162,265 (-)NCBIMGSCv36mm8
Celera1618,812,725 - 18,821,440 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.3NCBI
Ranbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544217,985,544 - 17,992,759 (-)Ensembl
ChiLan1.0NW_00495544217,985,456 - 17,992,945 (-)NCBIChiLan1.0ChiLan1.0
RANBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22329,744,646 - 29,754,878 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12232,291,533 - 32,301,752 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0222,877,954 - 2,888,035 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12218,550,699 - 18,560,875 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2218,549,055 - 18,560,573 (+)EnsemblpanPan2panpan1.1
RANBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12629,211,559 - 29,219,247 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2629,211,863 - 29,220,451 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2629,170,472 - 29,178,153 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02630,615,598 - 30,623,280 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2630,615,149 - 30,624,491 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12628,663,443 - 28,671,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02628,288,807 - 28,296,490 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02629,373,800 - 29,381,482 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
RANBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1451,494,359 - 51,500,417 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11451,494,258 - 51,500,420 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21455,131,300 - 55,137,463 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1195,611,968 - 5,622,414 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl195,612,268 - 5,622,191 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660851,311,461 - 1,321,901 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ranbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624747728,014 - 736,043 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624747728,123 - 736,045 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Ranbp1
17 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:196
Count of miRNA genes:122
Interacting mature miRNAs:130
Transcripts:ENSRNOT00000002579
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
2302043Pia27Pristane induced arthritis QTL 2718.60.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)118256654583440803Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat

Markers in Region
EST9C6  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81196,254,951 - 96,255,087 (+)Marker Load Pipeline
mRatBN7.21182,750,641 - 82,750,778 (+)MAPPERmRatBN7.2
Rnor_6.01186,898,624 - 86,898,760NCBIRnor6.0
Rnor_5.01189,992,562 - 89,992,698UniSTSRnor5.0
RGSC_v3.41184,744,441 - 84,744,577UniSTSRGSC3.4
Celera1181,527,647 - 81,527,783UniSTS
Cytogenetic Map11q23UniSTS
Ranbp1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21316,719,954 - 16,720,426 (+)MAPPERmRatBN7.2
mRatBN7.2122,069,639 - 2,070,119 (+)MAPPERmRatBN7.2
Rnor_6.0123,499,932 - 3,500,411NCBIRnor6.0
Rnor_6.01320,446,004 - 20,446,475NCBIRnor6.0
Rnor_5.01325,647,455 - 25,647,926UniSTSRnor5.0
Rnor_5.0125,642,528 - 5,643,007UniSTSRnor5.0
RGSC_v3.4136,284,035 - 6,284,506UniSTSRGSC3.4
RGSC_v3.4122,075,301 - 2,075,780UniSTSRGSC3.4
Celera123,921,595 - 3,922,074UniSTS
Celera1316,744,718 - 16,745,189UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map13p13UniSTS
Cytogenetic Map11q23UniSTS
UniSTS:237455  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21182,750,496 - 82,750,709 (+)MAPPERmRatBN7.2
mRatBN7.21316,720,445 - 16,720,662 (+)MAPPERmRatBN7.2
Rnor_6.01320,446,495 - 20,446,711NCBIRnor6.0
Rnor_6.01186,898,479 - 86,898,691NCBIRnor6.0
Rnor_5.01325,647,946 - 25,648,162UniSTSRnor5.0
Rnor_5.01189,992,417 - 89,992,629UniSTSRnor5.0
RGSC_v3.41184,744,296 - 84,744,508UniSTSRGSC3.4
RGSC_v3.4136,284,526 - 6,284,742UniSTSRGSC3.4
Celera1316,745,209 - 16,745,425UniSTS
Celera1181,527,502 - 81,527,714UniSTS
Cytogenetic Map13p13UniSTS
Cytogenetic Map11q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000002579   ⟹   ENSRNOP00000002579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1196,248,171 - 96,255,145 (+)Ensembl
mRatBN7.2 Ensembl1182,742,600 - 82,750,833 (+)Ensembl
Rnor_6.0 Ensembl1186,890,585 - 86,898,818 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094129   ⟹   ENSRNOP00000081797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1196,246,740 - 96,254,963 (+)Ensembl
mRatBN7.2 Ensembl1182,743,395 - 82,750,838 (+)Ensembl
RefSeq Acc Id: NM_001108324   ⟹   NP_001101794
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81196,246,912 - 96,255,145 (+)NCBI
mRatBN7.21182,742,603 - 82,750,836 (+)NCBI
Rnor_6.01186,890,585 - 86,898,818 (+)NCBI
Rnor_5.01189,984,523 - 89,992,756 (+)NCBI
RGSC_v3.41184,736,402 - 84,744,635 (+)RGD
Celera1181,519,608 - 81,527,841 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001101794 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL77927 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002579.5
  ENSRNOP00000081797
  ENSRNOP00000081797.1
RefSeq Acc Id: NP_001101794   ⟸   NM_001108324
- UniProtKB: A6JSI0 (UniProtKB/TrEMBL),   A0A8I5ZTU5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002579   ⟸   ENSRNOT00000002579
Ensembl Acc Id: ENSRNOP00000081797   ⟸   ENSRNOT00000094129
Protein Domains
RanBD1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A2G9-F1-model_v2 AlphaFold D4A2G9 1-203 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698308
Promoter ID:EPDNEW_R8832
Type:initiation region
Name:Ranbp1_1
Description:RAN binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01186,890,607 - 86,890,667EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310521 AgrOrtholog
BioCyc Gene G2FUF-20647 BioCyc
Ensembl Genes ENSRNOG00000001884 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002579.6 UniProtKB/TrEMBL
  ENSRNOT00000094129 ENTREZGENE
  ENSRNOT00000094129.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH_type UniProtKB/TrEMBL
  RanBP UniProtKB/TrEMBL
  RanBP1-like UniProtKB/TrEMBL
  RanBP1_RanBD UniProtKB/TrEMBL
KEGG Report rno:360739 UniProtKB/TrEMBL
NCBI Gene 360739 ENTREZGENE
PANTHER PTHR23138 UniProtKB/TrEMBL
  RAN-SPECIFIC GTPASE-ACTIVATING PROTEIN UniProtKB/TrEMBL
Pfam Ran_BP1 UniProtKB/TrEMBL
PhenoGen Ranbp1 PhenoGen
PROSITE RANBD1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001884 RatGTEx
SMART RanBD UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A8I5ZTU5 ENTREZGENE, UniProtKB/TrEMBL
  A6JSI0 ENTREZGENE, UniProtKB/TrEMBL
  D4A2G9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ranbp1  RAN binding protein 1   Ranbp1_predicted  RAN binding protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ranbp1_predicted  RAN binding protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED