Fam13b (family with sequence similarity 13, member B) - Rat Genome Database

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Gene: Fam13b (family with sequence similarity 13, member B) Rattus norvegicus
Analyze
Symbol: Fam13b
Name: family with sequence similarity 13, member B
RGD ID: 1310484
Description: Predicted to be involved in signal transduction. Orthologous to human FAM13B (family with sequence similarity 13 member B); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Fam13b1; family with sequence similarity 13, member B1; hypothetical protein LOC291694; LOC291694; RGD1310484; similar to hypothetical protein MGC37079 ; uncharacterized protein LOC291694
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81826,314,440 - 26,395,260 (-)NCBIGRCr8
mRatBN7.21826,040,285 - 26,107,112 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,040,285 - 26,106,587 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1826,167,679 - 26,233,977 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01826,931,236 - 26,997,702 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01826,266,142 - 26,332,605 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01827,223,345 - 27,304,462 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,223,345 - 27,289,876 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01826,936,705 - 27,003,384 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41826,909,290 - 26,976,124 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11826,935,936 - 27,002,678 (-)NCBI
Celera1825,780,082 - 25,846,564 (-)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Fam13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81826,314,440 - 26,395,260 (-)NCBIGRCr8
mRatBN7.21826,040,285 - 26,107,112 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,040,285 - 26,106,587 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1826,167,679 - 26,233,977 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01826,931,236 - 26,997,702 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01826,266,142 - 26,332,605 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01827,223,345 - 27,304,462 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,223,345 - 27,289,876 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01826,936,705 - 27,003,384 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41826,909,290 - 26,976,124 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11826,935,936 - 27,002,678 (-)NCBI
Celera1825,780,082 - 25,846,564 (-)NCBICelera
Cytogenetic Map18p12NCBI
FAM13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385137,937,960 - 138,052,178 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5137,937,960 - 138,051,961 (-)EnsemblGRCh38hg38GRCh38
GRCh375137,273,649 - 137,374,342 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,301,541 - 137,396,701 (-)NCBINCBI36Build 36hg18NCBI36
Build 345137,301,549 - 137,396,619NCBI
Celera5133,395,904 - 133,490,701 (-)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5132,465,414 - 132,560,569 (-)NCBIHuRef
CHM1_15136,706,214 - 136,801,333 (-)NCBICHM1_1
T2T-CHM13v2.05138,464,356 - 138,578,527 (-)NCBIT2T-CHM13v2.0
Fam13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391834,573,624 - 34,656,096 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1834,575,404 - 34,639,884 (-)EnsemblGRCm39 Ensembl
GRCm381834,440,571 - 34,523,047 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1834,442,351 - 34,506,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv371834,602,005 - 34,666,477 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361834,567,152 - 34,631,624 (-)NCBIMGSCv36mm8
Celera1834,898,412 - 34,962,957 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.69NCBI
Fam13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554182,378,423 - 2,454,959 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554182,378,423 - 2,454,959 (+)NCBIChiLan1.0ChiLan1.0
FAM13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24133,220,333 - 133,392,756 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15131,359,891 - 131,532,311 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05133,324,842 - 133,497,303 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15139,461,276 - 139,555,121 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5139,461,276 - 139,555,121 (-)Ensemblpanpan1.1panPan2
FAM13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11125,626,334 - 25,712,897 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1125,628,536 - 25,708,365 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1124,390,324 - 24,476,620 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01126,476,312 - 26,562,773 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1126,476,317 - 26,562,682 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11125,183,981 - 25,270,283 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01125,007,678 - 25,094,072 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01125,670,658 - 25,757,194 (-)NCBIUU_Cfam_GSD_1.0
Fam13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213154,378,793 - 154,461,722 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365317,149,768 - 7,217,108 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365317,149,783 - 7,232,712 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2139,958,490 - 140,073,663 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12139,958,488 - 140,073,709 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22145,687,704 - 145,752,823 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12340,614,173 - 40,703,968 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2340,611,682 - 40,723,209 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603437,167,426 - 37,277,614 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474330,772,973 - 30,852,503 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam13b
325 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:286
Count of miRNA genes:196
Interacting mature miRNAs:234
Transcripts:ENSRNOT00000027663
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat

Markers in Region
D18Rat154  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,074,394 - 26,074,530 (+)MAPPERmRatBN7.2
Rnor_6.01827,257,449 - 27,257,584NCBIRnor6.0
Rnor_5.01826,970,809 - 26,970,944UniSTSRnor5.0
RGSC_v3.41826,943,393 - 26,943,529RGDRGSC3.4
RGSC_v3.41826,943,394 - 26,943,529UniSTSRGSC3.4
RGSC_v3.11826,970,039 - 26,970,175RGD
Celera1825,814,186 - 25,814,321UniSTS
SHRSP x BN Map1811.4999RGD
SHRSP x BN Map1811.4999UniSTS
Cytogenetic Map18p12UniSTS
RH133590  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,041,040 - 26,041,246 (+)MAPPERmRatBN7.2
Rnor_6.01827,224,101 - 27,224,306NCBIRnor6.0
Rnor_5.01826,937,461 - 26,937,666UniSTSRnor5.0
RGSC_v3.41826,910,046 - 26,910,251UniSTSRGSC3.4
Celera1825,780,838 - 25,781,043UniSTS
RH 3.4 Map18364.1UniSTS
Cytogenetic Map18p12UniSTS
RH137972  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,042,843 - 26,042,964 (+)MAPPERmRatBN7.2
Rnor_6.01827,225,904 - 27,226,024NCBIRnor6.0
Rnor_5.01826,939,264 - 26,939,384UniSTSRnor5.0
RGSC_v3.41826,911,849 - 26,911,969UniSTSRGSC3.4
Celera1825,782,641 - 25,782,761UniSTS
RH 3.4 Map18364.1UniSTS
Cytogenetic Map18p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 50 34 19 34 2 2 74 35 41 11 2
Low 10 7 7 7 6 9 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000027663   ⟹   ENSRNOP00000027663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1826,040,285 - 26,106,587 (-)Ensembl
Rnor_6.0 Ensembl1827,223,345 - 27,289,876 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096309   ⟹   ENSRNOP00000079749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1826,040,285 - 26,106,587 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115799   ⟹   ENSRNOP00000081531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1826,040,285 - 26,106,587 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119847   ⟹   ENSRNOP00000085511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1826,040,285 - 26,106,587 (-)Ensembl
RefSeq Acc Id: NM_001106158   ⟹   NP_001099628
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,440 - 26,380,732 (-)NCBI
mRatBN7.21826,040,285 - 26,106,587 (-)NCBI
Rnor_6.01827,223,345 - 27,289,876 (-)NCBI
Rnor_5.01826,936,705 - 27,003,384 (-)NCBI
RGSC_v3.41826,909,290 - 26,976,124 (-)RGD
Celera1825,780,082 - 25,846,564 (-)RGD
Sequence:
RefSeq Acc Id: XM_008772031   ⟹   XP_008770253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,380,588 (-)NCBI
mRatBN7.21826,040,286 - 26,106,442 (-)NCBI
Rnor_6.01827,223,346 - 27,289,918 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772032   ⟹   XP_008770254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,380,588 (-)NCBI
mRatBN7.21826,040,286 - 26,106,442 (-)NCBI
Rnor_6.01827,223,346 - 27,289,918 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772033   ⟹   XP_008770255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,380,588 (-)NCBI
mRatBN7.21826,040,286 - 26,106,442 (-)NCBI
Rnor_6.01827,223,346 - 27,289,918 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600914   ⟹   XP_017456403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,380,588 (-)NCBI
mRatBN7.21826,040,286 - 26,106,442 (-)NCBI
Rnor_6.01827,223,346 - 27,289,918 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096730   ⟹   XP_038952658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,381,255 (-)NCBI
mRatBN7.21826,040,286 - 26,107,112 (-)NCBI
RefSeq Acc Id: XM_039096731   ⟹   XP_038952659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,381,240 (-)NCBI
mRatBN7.21826,040,286 - 26,107,025 (-)NCBI
RefSeq Acc Id: XM_039096732   ⟹   XP_038952660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,380,588 (-)NCBI
mRatBN7.21826,040,286 - 26,106,442 (-)NCBI
RefSeq Acc Id: XM_039096733   ⟹   XP_038952661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,380,588 (-)NCBI
mRatBN7.21826,040,286 - 26,106,442 (-)NCBI
RefSeq Acc Id: XM_039096734   ⟹   XP_038952662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,340,802 (-)NCBI
mRatBN7.21826,040,286 - 26,066,651 (-)NCBI
RefSeq Acc Id: XM_063277235   ⟹   XP_063133305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,382,093 (-)NCBI
RefSeq Acc Id: XM_063277236   ⟹   XP_063133306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,395,247 (-)NCBI
RefSeq Acc Id: XM_063277237   ⟹   XP_063133307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,380,382 (-)NCBI
RefSeq Acc Id: XM_063277238   ⟹   XP_063133308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,395,260 (-)NCBI
RefSeq Acc Id: XM_063277239   ⟹   XP_063133309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,395,228 (-)NCBI
RefSeq Acc Id: XM_063277240   ⟹   XP_063133310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,395,186 (-)NCBI
RefSeq Acc Id: XM_063277241   ⟹   XP_063133311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,381,253 (-)NCBI
RefSeq Acc Id: XM_063277242   ⟹   XP_063133312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,380,396 (-)NCBI
RefSeq Acc Id: XM_063277243   ⟹   XP_063133313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,382,093 (-)NCBI
RefSeq Acc Id: XM_063277244   ⟹   XP_063133314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,380,376 (-)NCBI
RefSeq Acc Id: XM_063277245   ⟹   XP_063133315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,387,906 (-)NCBI
RefSeq Acc Id: XM_063277246   ⟹   XP_063133316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,381,258 (-)NCBI
RefSeq Acc Id: XM_063277247   ⟹   XP_063133317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,395,230 (-)NCBI
RefSeq Acc Id: XM_063277248   ⟹   XP_063133318
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,380,588 (-)NCBI
RefSeq Acc Id: XM_063277249   ⟹   XP_063133319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,381,240 (-)NCBI
RefSeq Acc Id: XM_063277250   ⟹   XP_063133320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,382,093 (-)NCBI
RefSeq Acc Id: XM_063277251   ⟹   XP_063133321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,381,255 (-)NCBI
RefSeq Acc Id: XM_063277252   ⟹   XP_063133322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,395,230 (-)NCBI
RefSeq Acc Id: XM_063277253   ⟹   XP_063133323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,314,441 - 26,380,588 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001099628 (Get FASTA)   NCBI Sequence Viewer  
  XP_008770253 (Get FASTA)   NCBI Sequence Viewer  
  XP_008770254 (Get FASTA)   NCBI Sequence Viewer  
  XP_008770255 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456403 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952658 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952659 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952660 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952661 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952662 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133305 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133306 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133307 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133308 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133309 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133310 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133311 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133312 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133313 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133314 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133315 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133316 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133317 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133318 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133319 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133320 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133321 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133322 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133323 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76226 (Get FASTA)   NCBI Sequence Viewer  
  EDL76227 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000027663
  ENSRNOP00000027663.4
  ENSRNOP00000079749
  ENSRNOP00000079749.1
  ENSRNOP00000081531.1
  ENSRNOP00000085511.1
RefSeq Acc Id: NP_001099628   ⟸   NM_001106158
- UniProtKB: D3ZJY0 (UniProtKB/TrEMBL),   A6J2U4 (UniProtKB/TrEMBL),   A0A8I6G832 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770255   ⟸   XM_008772033
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770253   ⟸   XM_008772031
- Peptide Label: isoform X3
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770254   ⟸   XM_008772032
- Peptide Label: isoform X4
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456403   ⟸   XM_017600914
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZRM9 (UniProtKB/TrEMBL),   A0A8I6G832 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000027663   ⟸   ENSRNOT00000027663
RefSeq Acc Id: XP_038952658   ⟸   XM_039096730
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZRM9 (UniProtKB/TrEMBL),   A0A8I6G832 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952659   ⟸   XM_039096731
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZRM9 (UniProtKB/TrEMBL),   A0A8I6G832 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952661   ⟸   XM_039096733
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038952660   ⟸   XM_039096732
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038952662   ⟸   XM_039096734
- Peptide Label: isoform X9
RefSeq Acc Id: ENSRNOP00000085511   ⟸   ENSRNOT00000119847
RefSeq Acc Id: ENSRNOP00000081531   ⟸   ENSRNOT00000115799
RefSeq Acc Id: ENSRNOP00000079749   ⟸   ENSRNOT00000096309
RefSeq Acc Id: XP_063133308   ⟸   XM_063277238
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A0A8I5ZRM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133306   ⟸   XM_063277236
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A0A8I5ZRM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133317   ⟸   XM_063277247
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133322   ⟸   XM_063277252
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A0A8I6A1J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133309   ⟸   XM_063277239
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A6J2U4 (UniProtKB/TrEMBL),   D3ZJY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133310   ⟸   XM_063277240
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A6J2U4 (UniProtKB/TrEMBL),   D3ZJY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133315   ⟸   XM_063277245
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A6J2U4 (UniProtKB/TrEMBL),   D3ZJY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133320   ⟸   XM_063277250
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A0A8I6A1J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133313   ⟸   XM_063277243
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A6J2U4 (UniProtKB/TrEMBL),   D3ZJY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133305   ⟸   XM_063277235
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A0A8I5ZRM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133316   ⟸   XM_063277246
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A6J2U4 (UniProtKB/TrEMBL),   D3ZJY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133321   ⟸   XM_063277251
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A0A8I6A1J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133311   ⟸   XM_063277241
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A6J2U4 (UniProtKB/TrEMBL),   D3ZJY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133319   ⟸   XM_063277249
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A0A8I6A1J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133323   ⟸   XM_063277253
- Peptide Label: isoform X7
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133318   ⟸   XM_063277248
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A0A8I6A1J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133312   ⟸   XM_063277242
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A6J2U4 (UniProtKB/TrEMBL),   D3ZJY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133307   ⟸   XM_063277237
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A0A8I5ZRM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133314   ⟸   XM_063277244
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G832 (UniProtKB/TrEMBL),   A6J2U4 (UniProtKB/TrEMBL),   D3ZJY0 (UniProtKB/TrEMBL)
Protein Domains
Rho-GAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJY0-F1-model_v2 AlphaFold D3ZJY0 1-849 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700693
Promoter ID:EPDNEW_R11217
Type:initiation region
Name:Fam13b_1
Description:family with sequence similarity 13, member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01827,289,884 - 27,289,944EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310484 AgrOrtholog
BioCyc Gene G2FUF-7956 BioCyc
Ensembl Genes ENSRNOG00000020384 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027663 ENTREZGENE
  ENSRNOT00000027663.6 UniProtKB/TrEMBL
  ENSRNOT00000096309.1 UniProtKB/TrEMBL
  ENSRNOT00000115799.1 UniProtKB/TrEMBL
  ENSRNOT00000119847.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.555.10 UniProtKB/TrEMBL
InterPro FAM13 UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
KEGG Report rno:291694 UniProtKB/TrEMBL
NCBI Gene 291694 ENTREZGENE
PANTHER PROTEIN FAM13B UniProtKB/TrEMBL
  PTHR15904 UniProtKB/TrEMBL
Pfam RhoGAP UniProtKB/TrEMBL
PhenoGen Fam13b PhenoGen
PROSITE RHOGAP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020384 RatGTEx
SMART RhoGAP UniProtKB/TrEMBL
Superfamily-SCOP Rho_GAP UniProtKB/TrEMBL
UniProt A0A8I5ZRM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A1J8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G832 ENTREZGENE, UniProtKB/TrEMBL
  A6J2U4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJY0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Fam13b  family with sequence similarity 13, member B  Fam13b1  family with sequence similarity 13, member B1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Fam13b1  family with sequence similarity 13, member B1  RGD1310484  similar to hypothetical protein MGC37079   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310484  similar to hypothetical protein MGC37079   RGD1310484_predicted  similar to hypothetical protein MGC37079 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1310484_predicted  similar to hypothetical protein MGC37079 (predicted)  LOC291694_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC291694_predicted  similar to hypothetical protein MGC37079 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL