Cc2d2b (coiled-coil and C2 domain containing 2B) - Rat Genome Database

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Gene: Cc2d2b (coiled-coil and C2 domain containing 2B) Rattus norvegicus
Analyze
Symbol: Cc2d2b
Name: coiled-coil and C2 domain containing 2B
RGD ID: 1310408
Description: Predicted to be involved in non-motile cilium assembly and protein localization to ciliary transition zone. Predicted to be active in ciliary transition zone. Orthologous to human CC2D2B (coiled-coil and C2 domain containing 2B); INTERACTS WITH 1,2-dichloroethane (ortholog); 2,3',4,4',5-Pentachlorobiphenyl (ortholog); all-trans-retinoic acid (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil and C2 domain-containing protein 2A-like; LOC100909877; LOC100911325; LOC102555476; LOC294054; RGD1310408; similar to RIKEN cDNA 5730509K17 gene; uncharacterized LOC100909877; uncharacterized LOC100911325; uncharacterized LOC102555476
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81249,509,371 - 249,608,894 (+)NCBIGRCr8
GRCr8 Ensembl1249,511,389 - 249,606,142 (+)EnsemblGRCr8 Ensembl
mRatBN7.21239,561,506 - 239,655,771 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1239,561,987 - 239,682,416 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01259,998,744 - 260,092,810 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01267,281,331 - 267,367,424 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01267,441,913 - 267,533,809 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41245,907,430 - 245,993,371 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1235,406,811 - 235,501,002 (+)NCBICelera
RGSC_v3.11246,007,581 - 246,107,846 (+)NCBI
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Cc2d2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81249,509,371 - 249,608,894 (+)NCBIGRCr8
GRCr8 Ensembl1249,511,389 - 249,606,142 (+)EnsemblGRCr8 Ensembl
mRatBN7.21239,561,506 - 239,655,771 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1239,561,987 - 239,682,416 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01259,998,744 - 260,092,810 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01267,281,331 - 267,367,424 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01267,441,913 - 267,533,809 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41245,907,430 - 245,993,371 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1235,406,811 - 235,501,002 (+)NCBICelera
RGSC_v3.11246,007,581 - 246,107,846 (+)NCBI
Cytogenetic Map1q54NCBI
CC2D2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381095,907,671 - 96,033,745 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1095,907,603 - 96,033,745 (+)EnsemblGRCh38hg38GRCh38
GRCh371097,667,732 - 97,793,502 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361097,749,873 - 97,782,431 (+)NCBINCBI36Build 36hg18NCBI36
Build 341097,723,775 - 97,782,422NCBI
Celera1091,501,058 - 91,533,652 (+)NCBICelera
Cytogenetic Map10q24.1NCBI
HuRef1091,348,895 - 91,371,339 (+)NCBIHuRef
HuRef1091,387,428 - 91,420,011 (+)NCBIHuRef
CHM1_11098,041,709 - 98,074,282 (+)NCBICHM1_1
T2T-CHM13v2.01096,786,760 - 96,913,054 (+)NCBIT2T-CHM13v2.0
Cc2d2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391940,737,197 - 40,818,227 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1940,737,197 - 40,816,187 (+)EnsemblGRCm39 Ensembl
GRCm381940,748,753 - 40,829,778 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1940,748,753 - 40,827,743 (+)EnsemblGRCm38mm10GRCm38
MGSCv371940,839,924 - 40,901,848 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361940,802,227 - 40,880,669 (+)NCBIMGSCv36mm8
Celera1941,567,002 - 41,630,424 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1934.26NCBI
Cc2d2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555072,170,828 - 2,260,580 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555072,160,454 - 2,262,333 (+)NCBIChiLan1.0ChiLan1.0
CC2D2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28107,767,653 - 107,937,968 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110107,772,971 - 107,943,289 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01092,520,578 - 92,644,989 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11096,026,714 - 96,149,372 (+)NCBIpanpan1.1PanPan1.1panPan2
CC2D2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1289,371,454 - 9,480,331 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl289,447,040 - 9,480,252 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha289,557,020 - 9,665,230 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0289,643,606 - 9,751,777 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1289,352,276 - 9,460,511 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0289,411,811 - 9,519,678 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0289,555,113 - 9,663,312 (+)NCBIUU_Cfam_GSD_1.0
Cc2d2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721337,383,210 - 37,479,177 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366363,423,251 - 3,506,153 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366363,422,998 - 3,458,276 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CC2D2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14107,414,080 - 107,506,045 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114107,411,853 - 107,506,054 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214117,085,690 - 117,140,085 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CC2D2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1989,065,329 - 89,193,297 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604849,936,925 - 50,068,931 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cc2d2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247377,300,871 - 7,418,559 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247377,298,646 - 7,417,751 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cc2d2b
913 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1207243873252243873Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1210980612255980612Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1226175591270518180Rat
1578775Iddm21Insulin dependent diabetes mellitus QTL 214.13blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1245782829270518180Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1205233991267096252Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1218829748263829748Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1248619887269633915Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631836Stl31Serum triglyceride level QTL 314.645e-06blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1247133834270518180Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1210980612255980612Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1237995023269633915Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1233480549270108840Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1200449456256003563Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1234540191270518180Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1233480549270108840Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1210980612255980612Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1223134011262090599Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1210980612255980612Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1207243873252243873Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
2314011Gluco56Glucose level QTL 56blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1209203273254203273Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1225108840270108840Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1228180370266453608Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1205674651250674651Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1207243873252243873Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1224633915269633915Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1232312773270518180Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1238398865255849249Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1212738576257738576Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1194786607262083703Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1188241285250779312Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1208798288253798288Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228180243255849249Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1205674651250674651Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1210980612255980612Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1210980612255980612Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1233204160270518180Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1207099883252099883Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1241569529269633915Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1210980612255980612Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1243953669270518180Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1226175591270518180Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233349180270518180Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1210980612255980612Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1228174566270518180Rat

Markers in Region
D1Rat448  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81249,531,610 - 249,531,814 (+)Marker Load Pipeline
mRatBN7.21239,582,202 - 239,582,406 (+)MAPPERmRatBN7.2
Rnor_6.01260,018,941 - 260,019,144NCBIRnor6.0
Rnor_6.01259,848,665 - 259,848,868NCBIRnor6.0
Rnor_5.01267,462,138 - 267,462,341UniSTSRnor5.0
Rnor_5.01267,291,862 - 267,292,065UniSTSRnor5.0
RGSC_v3.41245,919,779 - 245,919,982UniSTSRGSC3.4
RGSC_v3.41245,919,778 - 245,919,982RGDRGSC3.4
Celera1235,427,065 - 235,427,268UniSTS
RGSC_v3.11246,034,031 - 246,034,679RGD
SHRSP x BN Map1134.54UniSTS
SHRSP x BN Map1134.54RGD
Cytogenetic Map1q54UniSTS


Expression

RNA-SEQ Expression

ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
sensory system
visual system
13 12 15 14 2 12 1 3 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008760468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005495123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000103586   ⟹   ENSRNOP00000096400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1249,511,389 - 249,602,940 (+)Ensembl
mRatBN7.2 Ensembl1239,561,987 - 239,682,416 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142350   ⟹   ENSRNOP00000101721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1249,511,389 - 249,606,142 (+)Ensembl
RefSeq Acc Id: XM_017590370   ⟹   XP_017445859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,509,371 - 249,608,894 (+)NCBI
mRatBN7.21239,561,506 - 239,655,771 (+)NCBI
Rnor_6.01259,998,744 - 260,092,810 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590372   ⟹   XP_017445861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,509,371 - 249,608,894 (+)NCBI
mRatBN7.21239,561,506 - 239,655,771 (+)NCBI
Rnor_6.01259,998,744 - 260,092,810 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017590375   ⟹   XP_017445864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,533,149 - 249,608,894 (+)NCBI
mRatBN7.21239,582,719 - 239,655,771 (+)NCBI
Rnor_6.01260,020,590 - 260,092,810 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039095248   ⟹   XP_038951176
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,514,426 - 249,608,894 (+)NCBI
mRatBN7.21239,565,181 - 239,655,771 (+)NCBI
RefSeq Acc Id: XM_039095250   ⟹   XP_038951178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,514,426 - 249,608,894 (+)NCBI
mRatBN7.21239,565,181 - 239,655,771 (+)NCBI
RefSeq Acc Id: XM_039095252   ⟹   XP_038951180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,514,425 - 249,608,894 (+)NCBI
mRatBN7.21239,565,178 - 239,655,771 (+)NCBI
RefSeq Acc Id: XM_039095254   ⟹   XP_038951182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,514,426 - 249,608,894 (+)NCBI
mRatBN7.21239,565,181 - 239,655,739 (+)NCBI
RefSeq Acc Id: XM_039095256   ⟹   XP_038951184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,514,427 - 249,602,923 (+)NCBI
mRatBN7.21239,565,182 - 239,653,519 (+)NCBI
RefSeq Acc Id: XM_039095259   ⟹   XP_038951187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,514,426 - 249,581,087 (+)NCBI
mRatBN7.21239,565,181 - 239,631,685 (+)NCBI
RefSeq Acc Id: XM_039095260   ⟹   XP_038951188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,514,426 - 249,573,462 (+)NCBI
mRatBN7.21239,565,181 - 239,624,056 (+)NCBI
RefSeq Acc Id: XM_063280394   ⟹   XP_063136464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,509,371 - 249,608,894 (+)NCBI
RefSeq Acc Id: XM_063280428   ⟹   XP_063136498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,563,101 - 249,608,894 (+)NCBI
RefSeq Acc Id: XR_005495123
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,514,426 - 249,578,375 (+)NCBI
mRatBN7.21239,565,181 - 239,628,971 (+)NCBI
RefSeq Acc Id: XP_017445859   ⟸   XM_017590370
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AV13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445861   ⟸   XM_017590372
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017445864   ⟸   XM_017590375
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_038951180   ⟸   XM_039095252
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038951176   ⟸   XM_039095248
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038951178   ⟸   XM_039095250
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038951182   ⟸   XM_039095254
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038951187   ⟸   XM_039095259
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038951188   ⟸   XM_039095260
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038951184   ⟸   XM_039095256
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000096400   ⟸   ENSRNOT00000103586
RefSeq Acc Id: XP_063136464   ⟸   XM_063280394
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063136498   ⟸   XM_063280428
- Peptide Label: isoform X12
Ensembl Acc Id: ENSRNOP00000101721   ⟸   ENSRNOT00000142350
Protein Domains
C2

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310408 AgrOrtholog
BioCyc Gene G2FUF-55700 BioCyc
Ensembl Genes ENSRNOG00000070964 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000103586 ENTREZGENE
  ENSRNOT00000103586.1 UniProtKB/TrEMBL
  ENSRNOT00000142350 ENTREZGENE
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  CC2D2AN-C2 UniProtKB/TrEMBL
  CEP76_C UniProtKB/TrEMBL
  CEPT76/DRC7_peptidase-like_dom UniProtKB/TrEMBL
  DUF5523 UniProtKB/TrEMBL
  Tectonic-like_complex_comp UniProtKB/TrEMBL
KEGG Report rno:294054 UniProtKB/TrEMBL
NCBI Gene 294054 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN-RELATED UniProtKB/TrEMBL
  PROTEIN CC2D2B UniProtKB/TrEMBL
Pfam CC2D2AN-C2 UniProtKB/TrEMBL
  CEP76_C UniProtKB/TrEMBL
  CEPT76_peptidase UniProtKB/TrEMBL
  DUF5523 UniProtKB/TrEMBL
PhenoGen Cc2d2b PhenoGen
RatGTEx ENSRNOG00000070964 RatGTEx
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A8I6AV13 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Cc2d2b  coiled-coil and C2 domain containing 2B  Cc2d2b  coiled-coil and C2 domain containing 2B  Data merged from RGD:149736087 737654 PROVISIONAL
2021-08-09 Cc2d2b  coiled-coil and C2 domain containing 2B      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-03-09 Cc2d2b  coiled-coil and C2 domain containing 2B  LOC102555476  uncharacterized LOC102555476  Data merged from RGD:7717295 737654 PROVISIONAL
2015-07-29 Cc2d2b  coiled-coil and C2 domain containing 2B  LOC100911325  uncharacterized LOC100911325  Data merged from RGD:6493414 737654 PROVISIONAL
2015-07-29 LOC102555476  uncharacterized LOC102555476  LOC100909877  uncharacterized LOC100909877  Data merged from RGD:6501328 737654 PROVISIONAL
2013-12-18 LOC102555476  uncharacterized LOC102555476      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100911325  uncharacterized LOC100911325      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100909877  uncharacterized LOC100909877      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-02-27 Cc2d2b  coiled-coil and C2 domain containing 2B  RGD1310408_predicted  similar to RIKEN cDNA 5730509K17 gene (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1310408_predicted  similar to RIKEN cDNA 5730509K17 gene (predicted)  LOC294054_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294054_predicted  similar to RIKEN cDNA 5730509K17 gene (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL