Uros (uroporphyrinogen III synthase) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Uros (uroporphyrinogen III synthase) Rattus norvegicus
Analyze
Symbol: Uros
Name: uroporphyrinogen III synthase
RGD ID: 1310396
Description: Enables folic acid binding activity. Contributes to uroporphyrinogen-III synthase activity. Involved in several processes, including cellular response to arsenic-containing substance; response to platinum ion; and uroporphyrinogen III biosynthetic process. Predicted to be active in cytosol. Used to study cutaneous porphyria. Human ortholog(s) of this gene implicated in cutaneous porphyria. Orthologous to human UROS (uroporphyrinogen III synthase); PARTICIPATES IN acute intermittent porphyria pathway; erythropoietic porphyria pathway; heme biosynthetic pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC309070; urogen III synthase; uroporphyrinogen III co-synthase; uroporphyrinogen-III synthase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,920,827 - 197,943,183 (-)NCBIGRCr8
GRCr8 Ensembl1197,921,701 - 197,936,150 (-)EnsemblGRCr8 Ensembl
mRatBN7.21188,490,832 - 188,513,659 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1188,490,323 - 188,512,249 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1196,841,463 - 196,861,991 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01204,018,077 - 204,038,605 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01196,691,597 - 196,712,125 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01205,755,766 - 205,778,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1205,756,640 - 205,777,167 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01212,704,834 - 212,727,235 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41193,184,946 - 193,205,475 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1186,229,349 - 186,249,866 (-)NCBICelera
RGSC_v3.11193,334,828 - 193,355,356 (-)NCBI
Cytogenetic Map1q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
cutaneous porphyria  (IAGP,ISO,ISS)
genetic disease  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Arsenite alters heme synthesis in long-term cultures of adult rat hepatocytes. Aguilar-Gonzalez MG, etal., Toxicol Sci. 1999 Jun;49(2):281-9.
2. Biosynthesis of heme in mammals. Ajioka RS, etal., Biochim Biophys Acta. 2006 Jul;1763(7):723-36. Epub 2006 Jun 3.
3. Synthesis, delivery and regulation of eukaryotic heme and Fe-S cluster cofactors. Barupala DP, etal., Arch Biochem Biophys. 2016 Feb 15;592:60-75. doi: 10.1016/j.abb.2016.01.010. Epub 2016 Jan 16.
4. Point mutations in the uroporphyrinogen III synthase gene in congenital erythropoietic porphyria (Gunther's disease). Deybach JC, etal., Blood. 1990 May 1;75(9):1763-5.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. GenMAPP: Gene Map Annotator and Pathway Profiler GenMAPP
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. Irgasan DP 300 (5-chloro-2-(2,4-dichlorophenoxy)-phenol) induces cytochrome P450s and inhibits haem biosynthesis in rat hepatocytes cultured on Matrigel. Jinno H, etal., Xenobiotica. 1997 Jul;27(7):681-92.
9. Rat hepatic uroporphyrinogen III co-synthase. Purification and evidence for a bound folate coenzyme participating in the biosynthesis of uroporphyrinogen III. Kohashi M, etal., Biochem J. 1984 Jun 15;220(3):755-65.
10. Characterization of his-tagged rat uroporphyrinogen III synthase wild-type and variant enzymes. Li N, etal., Protein J. 2007 Dec;26(8):569-76.
11. Enzymes of heme metabolism in the kidney: regulation by trace metals which do not form heme complexes. Maines MD and Kappas A, J Exp Med. 1977 Nov 1;146(5):1286-93.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
14. Alterations in renal heme biosynthesis during metal nephrotoxicity. Oskarsson A and Fowler BA, Ann N Y Acad Sci. 1987;514:268-77.
15. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
16. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
17. GOA pipeline RGD automated data pipeline
18. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
20. Comprehensive gene review and curation RGD comprehensive gene curation
21. Biosynthesis of uroporphyrinogens. Interaction among 2-(aminomethyl)bilanes and the enzymatic system. Sburlati A, etal., Biochemistry. 1983 Aug 16;22(17):4006-13.
22. Congenital erythropoietic porphyria and erythropoietic protoporphyria: Identification of 7 uroporphyrinogen III synthase and 20 ferrochelatase novel mutations. Weiss Y, etal., Mol Genet Metab. 2019 Nov;128(3):358-362. doi: 10.1016/j.ymgme.2018.08.015. Epub 2018 Aug 31.
Additional References at PubMed
PMID:3174619   PMID:3805019   PMID:7607680   PMID:12477932   PMID:14651853   PMID:18004775  


Genomics

Comparative Map Data
Uros
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,920,827 - 197,943,183 (-)NCBIGRCr8
GRCr8 Ensembl1197,921,701 - 197,936,150 (-)EnsemblGRCr8 Ensembl
mRatBN7.21188,490,832 - 188,513,659 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1188,490,323 - 188,512,249 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1196,841,463 - 196,861,991 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01204,018,077 - 204,038,605 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01196,691,597 - 196,712,125 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01205,755,766 - 205,778,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1205,756,640 - 205,777,167 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01212,704,834 - 212,727,235 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41193,184,946 - 193,205,475 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1186,229,349 - 186,249,866 (-)NCBICelera
RGSC_v3.11193,334,828 - 193,355,356 (-)NCBI
Cytogenetic Map1q41NCBI
UROS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810125,784,980 - 125,823,258 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10125,784,980 - 125,823,288 (-)EnsemblGRCh38hg38GRCh38
GRCh3710127,473,549 - 127,511,827 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610127,467,142 - 127,501,757 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410127,467,141 - 127,501,757NCBI
Celera10121,252,582 - 121,287,272 (-)NCBICelera
Cytogenetic Map10q26.2NCBI
HuRef10121,166,434 - 121,201,129 (-)NCBIHuRef
CHM1_110127,758,882 - 127,793,568 (-)NCBICHM1_1
T2T-CHM13v2.010126,667,433 - 126,705,738 (-)NCBIT2T-CHM13v2.0
Uros
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397133,287,871 - 133,312,176 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7133,287,972 - 133,311,801 (-)EnsemblGRCm39 Ensembl
GRCm387133,686,142 - 133,710,467 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7133,686,243 - 133,710,072 (-)EnsemblGRCm38mm10GRCm38
MGSCv377140,878,013 - 140,900,978 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367133,524,673 - 133,547,638 (-)NCBIMGSCv36mm8
Celera7133,491,254 - 133,514,229 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map777.26NCBI
Uros
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554773,673,532 - 3,707,760 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554773,673,583 - 3,707,761 (-)NCBIChiLan1.0ChiLan1.0
UROS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28137,636,012 - 137,673,672 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110137,640,826 - 137,679,159 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010122,346,072 - 122,384,405 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110126,610,621 - 126,648,363 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10126,613,732 - 126,648,363 (-)Ensemblpanpan1.1panPan2
UROS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12834,952,074 - 34,983,532 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2834,948,003 - 34,983,532 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2835,010,678 - 35,042,131 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02835,509,930 - 35,540,636 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2835,504,435 - 35,540,634 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12835,063,739 - 35,095,183 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02835,055,275 - 35,086,722 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02835,315,163 - 35,346,614 (-)NCBIUU_Cfam_GSD_1.0
Uros
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721311,744,646 - 11,770,000 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648613,791,286 - 13,817,238 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648613,792,354 - 13,816,744 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UROS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14135,101,610 - 135,131,072 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114135,101,609 - 135,131,082 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214146,730,875 - 146,760,513 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UROS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19118,405,674 - 118,450,544 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9118,410,802 - 118,440,915 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604879,769,188 - 79,808,154 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uros
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473721,340,193 - 21,383,452 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Uros
66 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:367
Count of miRNA genes:206
Interacting mature miRNAs:248
Transcripts:ENSRNOT00000024279
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1153679879198679879Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1177339686222339686Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1181059071226059071Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1181059071226059071Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1153679879205813246Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1182039247227039247Rat
8694166Bw147Body weight QTL 1476.830.001body mass (VT:0001259)body weight gain (CMO:0000420)1153788989198788989Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1183564652228564652Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1193964073238964073Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1160573753210707719Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1181059071226059071Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1139442053223964440Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1160573753210707719Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1165278545210278545Rat
152025232Bw192Body weight QTL 1923.93body mass (VT:0001259)1127329268206393015Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1161077990206077990Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1181059071226059071Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1181059071226059071Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1194575422239575422Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1168063662213063662Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1193400541238400541Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1159894717207261263Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1163992710208992710Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1182535316227535316Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1146080545243492863Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1181059071226059071Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1153679879232414077Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1160574007235238518Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1181059071226059071Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1181059071226059071Rat
1359018Hrtrt20Heart rate QTL 203.08heart pumping trait (VT:2000009)heart rate (CMO:0000002)1194786607207590403Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1162753891207753891Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1180739993225739993Rat
61378Bp43Blood pressure QTL 4322.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1191177449205813246Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1191190115223964326Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1172718770228180370Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1111949780210707719Rat
2312558Glom17Glomerulus QTL 173.90.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1175967553200707874Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
619614Bp78Blood pressure QTL 780.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1178547286206690557Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1194786607262083703Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1188241285250779312Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1139442053223964440Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1192995199237995199Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1111949780210707719Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1185979875230979875Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1197807365233480676Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753210707719Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1193400541238400541Rat
1576310Schws2Schwannoma susceptibility QTL 20.029nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1153788989198788989Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1165707719210707719Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1173363824227535316Rat
152025212Bw190Body weight QTL 1905.7body mass (VT:0001259)1132966869206393015Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1191260175236260175Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2325727Pia41Pristane induced arthritis QTL 41joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1188241285233241285Rat
7411599Foco11Food consumption QTL 1118.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1153788989198788989Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1160573753210707719Rat
631670Iddm10Insulin dependent diabetes mellitus QTL 101.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1183564652205813246Rat

Markers in Region
RH138448  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21188,494,624 - 188,494,744 (+)MAPPERmRatBN7.2
Rnor_6.01205,759,555 - 205,759,674NCBIRnor6.0
Rnor_5.01212,708,623 - 212,708,742UniSTSRnor5.0
RGSC_v3.41193,187,863 - 193,187,982UniSTSRGSC3.4
Celera1186,232,266 - 186,232,385UniSTS
RH 3.4 Map11432.7UniSTS
Cytogenetic Map1q41UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 11 49 113 91 90 59 25 59 6 218 97 11 93 45 60 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000024279   ⟹   ENSRNOP00000024278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1197,921,701 - 197,936,150 (-)Ensembl
mRatBN7.2 Ensembl1188,490,323 - 188,512,249 (-)Ensembl
Rnor_6.0 Ensembl1205,756,640 - 205,777,167 (-)Ensembl
RefSeq Acc Id: NM_001012068   ⟹   NP_001012068
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,921,699 - 197,942,228 (-)NCBI
mRatBN7.21188,491,708 - 188,512,237 (-)NCBI
Rnor_6.01205,756,638 - 205,777,167 (-)NCBI
Rnor_5.01212,704,834 - 212,727,235 (-)NCBI
RGSC_v3.41193,184,946 - 193,205,475 (-)RGD
Celera1186,229,349 - 186,249,866 (-)RGD
Sequence:
RefSeq Acc Id: XM_008759891   ⟹   XP_008758113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,920,827 - 197,942,238 (-)NCBI
mRatBN7.21188,490,836 - 188,512,247 (-)NCBI
Rnor_6.01205,755,766 - 205,777,126 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589229   ⟹   XP_017444718
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,920,827 - 197,943,165 (-)NCBI
mRatBN7.21188,490,832 - 188,513,659 (-)NCBI
Rnor_6.01205,755,766 - 205,778,170 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063263773   ⟹   XP_063119843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,920,827 - 197,943,183 (-)NCBI
RefSeq Acc Id: NP_001012068   ⟸   NM_001012068
- UniProtKB: Q5XIF2 (UniProtKB/TrEMBL),   F7ET42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758113   ⟸   XM_008759891
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017444718   ⟸   XM_017589229
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000024278   ⟸   ENSRNOT00000024279
RefSeq Acc Id: XP_063119843   ⟸   XM_063263773
- Peptide Label: isoform X2
- UniProtKB: F7ET42 (UniProtKB/TrEMBL),   Q5XIF2 (UniProtKB/TrEMBL)
Protein Domains
Tetrapyrrole biosynthesis uroporphyrinogen III

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIF2-F1-model_v2 AlphaFold Q5XIF2 1-265 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690489
Promoter ID:EPDNEW_R1014
Type:multiple initiation site
Name:Uros_1
Description:uroporphyrinogen III synthase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01205,777,177 - 205,777,237EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310396 AgrOrtholog
BioCyc Gene G2FUF-57180 BioCyc
BioCyc Pathway PWY-5189 [tetrapyrrole biosynthesis II (from glycine)] BioCyc
BioCyc Pathway Image PWY-5189 BioCyc
Ensembl Genes ENSRNOG00000017810 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024279 ENTREZGENE
  ENSRNOT00000024279.5 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10090 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7191339 IMAGE-MGC_LOAD
InterPro 4pyrrol_syn_uPrphyn_synt_sf UniProtKB/TrEMBL
  4pyrrol_synth_uPrphyn_synth UniProtKB/TrEMBL
  UROS/Hem4 UniProtKB/TrEMBL
KEGG Report rno:309070 UniProtKB/TrEMBL
MGC_CLONE MGC:94633 IMAGE-MGC_LOAD
NCBI Gene 309070 ENTREZGENE
PANTHER PTHR12390 UniProtKB/TrEMBL
  UROPORPHYRINOGEN-III SYNTHASE UniProtKB/TrEMBL
Pfam HEM4 UniProtKB/TrEMBL
PhenoGen Uros PhenoGen
RatGTEx ENSRNOG00000017810 RatGTEx
Superfamily-SCOP HEM4_synth UniProtKB/TrEMBL
UniProt F7ET42 ENTREZGENE, UniProtKB/TrEMBL
  Q5XIF2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Uros  uroporphyrinogen III synthase  Uros_predicted  uroporphyrinogen III synthase (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Uros_predicted  uroporphyrinogen III synthase (predicted)      Symbol and Name status set to approved 70820 APPROVED