Phf19 (PHD finger protein 19) - Rat Genome Database

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Gene: Phf19 (PHD finger protein 19) Rattus norvegicus
Analyze
Symbol: Phf19
Name: PHD finger protein 19
RGD ID: 1310390
Description: Predicted to enable DNA binding activity; chromatin binding activity; and histone H3K36me3 reader activity. Predicted to be involved in negative regulation of macromolecule biosynthetic process; stem cell differentiation; and stem cell population maintenance. Predicted to be part of ESC/E(Z) complex. Predicted to be active in nucleus. Orthologous to human PHF19 (PHD finger protein 19); PARTICIPATES IN histone modification pathway; INTERACTS WITH 6-propyl-2-thiouracil; all-trans-retinoic acid; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC296653
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8338,572,766 - 38,604,950 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl338,572,766 - 38,593,854 (-)EnsemblGRCr8
mRatBN7.2318,175,281 - 18,197,289 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl318,175,282 - 18,196,405 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx321,243,412 - 21,264,502 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0329,828,436 - 29,849,528 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0328,082,296 - 28,103,386 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0313,957,136 - 13,978,283 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl313,957,136 - 13,978,224 (-)Ensemblrn6Rnor6.0
Rnor_5.0319,276,705 - 19,297,851 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4313,903,402 - 13,911,007 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera312,896,198 - 12,917,286 (-)NCBICelera
RGSC_v3.1313,801,774 - 13,812,518 (-)NCBI
Cytogenetic Map3p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beryllium sulfate  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Bisphenol Z  (ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
dicrotophos  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
fructose  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glucose  (ISO)
GSK-J4  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
indometacin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenethyl isothiocyanate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
propanal  (ISO)
resveratrol  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
ESC/E(Z) complex  (IEA,ISO)
nucleus  (IBA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. SET for life: biochemical activities and biological functions of SET domain-containing proteins. Herz HM, etal., Trends Biochem Sci. 2013 Dec;38(12):621-39. doi: 10.1016/j.tibs.2013.09.004. Epub 2013 Oct 20.
3. Tudor: a versatile family of histone methylation 'readers'. Lu R and Wang GG, Trends Biochem Sci. 2013 Nov;38(11):546-55. doi: 10.1016/j.tibs.2013.08.002. Epub 2013 Sep 10.
4. Readout of epigenetic modifications. Patel DJ and Wang Z, Annu Rev Biochem. 2013;82:81-118. doi: 10.1146/annurev-biochem-072711-165700.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
Additional References at PubMed
PMID:22438827   PMID:23104054   PMID:23160351   PMID:23273982   PMID:33611744  


Genomics

Comparative Map Data
Phf19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8338,572,766 - 38,604,950 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl338,572,766 - 38,593,854 (-)EnsemblGRCr8
mRatBN7.2318,175,281 - 18,197,289 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl318,175,282 - 18,196,405 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx321,243,412 - 21,264,502 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0329,828,436 - 29,849,528 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0328,082,296 - 28,103,386 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0313,957,136 - 13,978,283 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl313,957,136 - 13,978,224 (-)Ensemblrn6Rnor6.0
Rnor_5.0319,276,705 - 19,297,851 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4313,903,402 - 13,911,007 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera312,896,198 - 12,917,286 (-)NCBICelera
RGSC_v3.1313,801,774 - 13,812,518 (-)NCBI
Cytogenetic Map3p11NCBI
PHF19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389120,855,651 - 120,904,128 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9120,855,651 - 120,894,896 (-)Ensemblhg38GRCh38
GRCh379123,617,929 - 123,657,174 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369122,657,752 - 122,679,427 (-)NCBIBuild 36Build 36hg18NCBI36
Celera994,266,198 - 94,288,032 (-)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef993,235,537 - 93,254,614 (-)NCBIHuRef
CHM1_19123,765,090 - 123,786,747 (-)NCBICHM1_1
T2T-CHM13v2.09133,051,794 - 133,091,037 (-)NCBIT2T-CHM13v2.0
Phf19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39234,783,764 - 34,804,365 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl234,783,769 - 34,804,038 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38234,893,752 - 34,914,353 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl234,893,757 - 34,914,026 (-)Ensemblmm10GRCm38
MGSCv37234,749,275 - 34,769,496 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36234,715,764 - 34,735,985 (-)NCBIMGSCv36mm8
Celera234,593,706 - 34,613,934 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map223.02NCBI
Phf19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554197,160,249 - 7,179,318 (+)Ensembl
ChiLan1.0NW_0049554197,160,249 - 7,179,323 (+)NCBIChiLan1.0ChiLan1.0
PHF19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,450,882 - 18,490,116 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1918,453,232 - 18,493,280 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0991,982,511 - 92,030,060 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19120,330,111 - 120,349,274 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9120,330,111 - 120,369,459 (-)EnsemblpanPan2panpan1.1
PHF19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11173,895,104 - 73,911,030 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1172,308,039 - 72,351,904 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01175,032,636 - 75,077,220 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1175,034,546 - 75,073,866 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11173,543,019 - 73,585,390 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01173,572,259 - 73,616,852 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01174,310,058 - 74,355,088 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Phf19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947189,540,151 - 189,558,130 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364879,310,790 - 9,326,681 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364879,310,327 - 9,326,650 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,899,452 - 260,920,110 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11260,899,462 - 260,919,776 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21293,000,910 - 293,012,340 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHF19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11218,698,705 - 18,722,702 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1218,702,523 - 18,720,446 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603524,290,767 - 24,314,063 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phf19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476014,468,461 - 14,487,091 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476014,468,418 - 14,486,942 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Phf19
59 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:529
Count of miRNA genes:262
Interacting mature miRNAs:317
Transcripts:ENSRNOT00000025528
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
11528620Bss113Bone structure and strength QTL 1139.752e-10femur morphology trait (VT:0000559)femoral neck width (CMO:0001695)31649064819241681Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3822719433703538Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)31043430624512004Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 90 59 6 353 190 11 142 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000025528   ⟹   ENSRNOP00000025528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl338,572,766 - 38,593,854 (-)Ensembl
mRatBN7.2 Ensembl318,175,282 - 18,196,405 (-)Ensembl
Rnor_6.0 Ensembl313,957,136 - 13,978,224 (-)Ensembl
RefSeq Acc Id: NM_001106570   ⟹   NP_001100040
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,572,766 - 38,593,854 (-)NCBI
mRatBN7.2318,175,281 - 18,196,369 (-)NCBI
Rnor_6.0313,957,136 - 13,978,224 (-)NCBI
Rnor_5.0319,276,705 - 19,297,851 (-)NCBI
RGSC_v3.4313,903,402 - 13,911,007 (-)RGD
Celera312,896,198 - 12,917,286 (-)RGD
Sequence:
RefSeq Acc Id: XM_006233971   ⟹   XP_006234033
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,572,767 - 38,604,950 (-)NCBI
mRatBN7.2318,175,282 - 18,197,090 (-)NCBI
Rnor_6.0313,957,137 - 13,978,283 (-)NCBI
Rnor_5.0319,276,705 - 19,297,851 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063283522   ⟹   XP_063139592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,576,244 - 38,604,950 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001100040 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234033 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139592 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL93157 (Get FASTA)   NCBI Sequence Viewer  
  EDL93158 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025528
  ENSRNOP00000025528.5
RefSeq Acc Id: NP_001100040   ⟸   NM_001106570
- UniProtKB: F1M1Y4 (UniProtKB/TrEMBL),   A6JUD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234033   ⟸   XM_006233971
- Peptide Label: isoform X1
- UniProtKB: F1M1Y4 (UniProtKB/TrEMBL),   A6JUD9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025528   ⟸   ENSRNOT00000025528
RefSeq Acc Id: XP_063139592   ⟸   XM_063283522
- Peptide Label: isoform X2
Protein Domains
PHD-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M1Y4-F1-model_v2 AlphaFold F1M1Y4 1-578 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692010
Promoter ID:EPDNEW_R2535
Type:multiple initiation site
Name:Phf19_1
Description:PHD finger protein 19
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0313,978,273 - 13,978,333EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310390 AgrOrtholog
BioCyc Gene G2FUF-50073 BioCyc
Ensembl Genes ENSRNOG00000018874 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025528 ENTREZGENE
  ENSRNOT00000025528.7 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  3.90.980.20 UniProtKB/TrEMBL
InterPro KDM4_Tudor_2 UniProtKB/TrEMBL
  Mtf2_C_dom UniProtKB/TrEMBL
  PHF19_PHD2 UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
  Tudor_PHF19 UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:296653 UniProtKB/TrEMBL
NCBI Gene 296653 ENTREZGENE
PANTHER PHD FINGER PROTEIN 19 UniProtKB/TrEMBL
  POLYCOMB-LIKE TRANSCRIPTION FACTOR UniProtKB/TrEMBL
Pfam Mtf2_C UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  Tudor_2 UniProtKB/TrEMBL
PhenoGen Phf19 PhenoGen
PROSITE ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018874 RatGTEx
SMART PHD UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
Superfamily-SCOP FYVE_PHD_ZnF UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A6JUD9 ENTREZGENE, UniProtKB/TrEMBL
  F1M1Y4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Phf19  PHD finger protein 19   Phf19_predicted  PHD finger protein 19 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Phf19_predicted  PHD finger protein 19 (predicted)      Symbol and Name status set to approved 70820 APPROVED