Cfap161 (cilia and flagella associated protein 161) - Rat Genome Database

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Gene: Cfap161 (cilia and flagella associated protein 161) Rattus norvegicus
Analyze
Symbol: Cfap161
Name: cilia and flagella associated protein 161
RGD ID: 1310371
Description: Predicted to be involved in cilium assembly. Predicted to be located in axonemal microtubule. Predicted to be active in axonemal A tubule inner sheath and motile cilium. Orthologous to human CFAP161 (cilia and flagella associated protein 161); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; fenvalerate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cilia- and flagella-associated protein 161; hypothetical protein LOC308794; LOC308794; RGD1310371; similar to RIKEN cDNA 1700026D08; uncharacterized protein C15orf26 homolog; uncharacterized protein LOC308794
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,152,923 - 147,177,821 (-)NCBIGRCr8
mRatBN7.21137,743,783 - 137,768,685 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1137,743,784 - 137,768,730 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1145,679,077 - 145,704,018 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01152,848,090 - 152,873,031 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01145,723,274 - 145,748,215 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01145,907,093 - 145,931,583 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1145,907,094 - 145,931,583 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01146,836,112 - 146,860,740 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41140,036,327 - 140,061,890 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11140,114,865 - 140,140,296 (-)NCBI
Celera1129,764,696 - 129,789,521 (-)NCBICelera
Cytogenetic Map1q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Cfap161
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,152,923 - 147,177,821 (-)NCBIGRCr8
mRatBN7.21137,743,783 - 137,768,685 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1137,743,784 - 137,768,730 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1145,679,077 - 145,704,018 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01152,848,090 - 152,873,031 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01145,723,274 - 145,748,215 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01145,907,093 - 145,931,583 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1145,907,094 - 145,931,583 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01146,836,112 - 146,860,740 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41140,036,327 - 140,061,890 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11140,114,865 - 140,140,296 (-)NCBI
Celera1129,764,696 - 129,789,521 (-)NCBICelera
Cytogenetic Map1q31NCBI
CFAP161
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381581,099,408 - 81,149,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1581,007,033 - 81,149,179 (+)EnsemblGRCh38hg38GRCh38
GRCh371581,426,611 - 81,441,520 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361579,213,699 - 79,228,571 (+)NCBINCBI36Build 36hg18NCBI36
Build 341579,178,803 - 79,228,570NCBI
Celera1558,364,060 - 58,378,932 (+)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1558,185,012 - 58,199,867 (+)NCBIHuRef
CHM1_11581,544,595 - 81,559,483 (+)NCBICHM1_1
T2T-CHM13v2.01578,962,932 - 79,013,182 (+)NCBIT2T-CHM13v2.0
Cfap161
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39783,424,820 - 83,447,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl783,423,309 - 83,444,088 (-)EnsemblGRCm39 Ensembl
GRCm38783,775,612 - 83,798,025 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl783,774,101 - 83,794,880 (-)EnsemblGRCm38mm10GRCm38
MGSCv37790,924,127 - 90,943,349 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36783,651,804 - 83,671,011 (-)NCBIMGSCv36mm8
Celera781,187,091 - 81,206,627 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map747.74NCBI
Cfap161
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541611,833,610 - 11,844,452 (+)NCBIChiLan1.0ChiLan1.0
CFAP161
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21670,405,661 - 70,420,651 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11574,560,982 - 74,582,057 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01560,113,489 - 60,134,987 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11579,075,432 - 79,090,283 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1579,075,432 - 79,090,283 (+)Ensemblpanpan1.1panPan2
CFAP161
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1356,602,451 - 56,612,032 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl356,574,419 - 56,625,236 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha359,251,595 - 59,261,181 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0357,024,475 - 57,034,061 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl357,024,476 - 57,034,128 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1356,535,558 - 56,545,145 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0356,741,346 - 56,750,933 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0357,080,308 - 57,089,894 (-)NCBIUU_Cfam_GSD_1.0
Cfap161
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640126,752,875 - 126,765,516 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648319,569,010 - 19,581,641 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648319,569,009 - 19,581,626 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP161
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl749,927,305 - 49,940,707 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1749,912,450 - 49,940,708 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2755,512,283 - 55,540,522 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP161
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1262,242,522 - 2,257,405 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl262,242,304 - 2,257,047 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048139,631,312 - 139,646,043 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap161
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476820,730,887 - 20,742,110 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476820,730,979 - 20,742,495 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cfap161
130 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:178
Count of miRNA genes:137
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000016433
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
631570Bp94Blood pressure QTL 940.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123479780142990467Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
61346Rf2Renal disease susceptibility QTL 23.7urine protein amount (VT:0005160)urine protein level (CMO:0000591)199267916144267916Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
631202Gluco13Glucose level QTL 130.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1131763437159756369Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
631206Niddm40Non-insulin dependent diabetes mellitus QTL 40blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1136745990163747690Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
9685799Bp375Blood pressure QTL 375arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121833674166833674Rat
9685802Bp376Blood pressure QTL 376arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1126540680171540680Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
61370Mcs3Mammary carcinoma susceptibility QTL 32.15mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1102268556147268556Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1123350408182418476Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847151047847Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
2303591Gluco41Glucose level QTL 412blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1102168504147168504Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
2313060Bss71Bone structure and strength QTL 712.60.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1118944747163944747Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1136830018181830018Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)199267916144267916Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501168883176Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1103111621148111621Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1102813953151162766Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350408181759564Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1123350408182418476Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat

Markers in Region
RH131847  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21137,743,909 - 137,744,113 (+)MAPPERmRatBN7.2
Rnor_6.01145,907,220 - 145,907,423NCBIRnor6.0
Rnor_5.01146,836,239 - 146,836,442UniSTSRnor5.0
RGSC_v3.41140,036,454 - 140,036,657UniSTSRGSC3.4
Celera1129,764,823 - 129,765,026UniSTS
RH 3.4 Map11102.4UniSTS
Cytogenetic Map1q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 10 5
Low 2 2 3 10 1 1 62 14 24 6 1
Below cutoff 1 28 33 21 9 21 6 6 10 14 6 6

Sequence


RefSeq Acc Id: ENSRNOT00000016433   ⟹   ENSRNOP00000016433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1137,743,784 - 137,768,730 (-)Ensembl
Rnor_6.0 Ensembl1145,907,094 - 145,931,583 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105379   ⟹   ENSRNOP00000080644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1137,745,108 - 137,768,685 (-)Ensembl
RefSeq Acc Id: NM_001100581   ⟹   NP_001094051
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,152,923 - 147,177,821 (-)NCBI
mRatBN7.21137,743,783 - 137,768,685 (-)NCBI
Rnor_6.01145,907,093 - 145,931,583 (-)NCBI
Rnor_5.01146,836,112 - 146,860,740 (-)NCBI
RGSC_v3.41140,036,327 - 140,061,890 (-)RGD
Celera1129,764,696 - 129,789,521 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001094051 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH86444 (Get FASTA)   NCBI Sequence Viewer  
  AAI58776 (Get FASTA)   NCBI Sequence Viewer  
  EDM08753 (Get FASTA)   NCBI Sequence Viewer  
  EDM08754 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016433.4
  ENSRNOP00000080644.1
RefSeq Acc Id: NP_001094051   ⟸   NM_001100581
- UniProtKB: B0BND2 (UniProtKB/TrEMBL),   F7FGD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016433   ⟸   ENSRNOT00000016433
RefSeq Acc Id: ENSRNOP00000080644   ⟸   ENSRNOT00000105379

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BND2-F1-model_v2 AlphaFold B0BND2 1-303 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690167
Promoter ID:EPDNEW_R691
Type:initiation region
Name:Cfap161_1
Description:cilia and flagella associated protein 161
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01145,931,634 - 145,931,694EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310371 AgrOrtholog
BioCyc Gene G2FUF-58661 BioCyc
Ensembl Genes ENSRNOG00000012301 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016433.5 UniProtKB/TrEMBL
  ENSRNOT00000105379.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7132188 IMAGE-MGC_LOAD
  IMAGE:7303607 IMAGE-MGC_LOAD
InterPro MIR_dom_sf UniProtKB/TrEMBL
KEGG Report rno:308794 UniProtKB/TrEMBL
MGC_CLONE MGC:105996 IMAGE-MGC_LOAD
  MGC:188096 IMAGE-MGC_LOAD
NCBI Gene 308794 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 161 UniProtKB/TrEMBL
  CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 161 UniProtKB/TrEMBL
PhenoGen Cfap161 PhenoGen
RatGTEx ENSRNOG00000012301 RatGTEx
Superfamily-SCOP SSF82109 UniProtKB/TrEMBL
UniProt A0A8I5ZQI1_RAT UniProtKB/TrEMBL
  B0BND2 ENTREZGENE, UniProtKB/TrEMBL
  F7FGD9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-14 Cfap161  cilia and flagella associated protein 161  RGD1310371  similar to RIKEN cDNA 1700026D08  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1310371  similar to RIKEN cDNA 1700026D08  RGD1310371_predicted  similar to RIKEN cDNA 1700026D08 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310371_predicted  similar to RIKEN cDNA 1700026D08 (predicted)  LOC308794_predicted  similar to RIKEN cDNA 1700026D08 (predicted)  Symbol and Name status set to approved 1331353 APPROVED
2005-01-20 RGD1310371_predicted  similar to RIKEN cDNA 1700026D08 (predicted)  LOC308794_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC308794_predicted  similar to RIKEN cDNA 1700026D08 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL