Galnt16 (polypeptide N-acetylgalactosaminyltransferase 16) - Rat Genome Database

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Gene: Galnt16 (polypeptide N-acetylgalactosaminyltransferase 16) Rattus norvegicus
Analyze
Symbol: Galnt16
Name: polypeptide N-acetylgalactosaminyltransferase 16
RGD ID: 1310202
Description: Predicted to enable polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation via serine and protein O-linked glycosylation via threonine. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT16 (polypeptide N-acetylgalactosaminyltransferase 16); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 4,4'-sulfonyldiphenol; atrazine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Galntl1; LOC362760; polypeptide N-acetylgalactosaminyltransferase-like 1; putative polypeptide N-acetylgalactosaminyltransferase-like protein 1; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86105,900,987 - 105,982,039 (+)NCBIGRCr8
mRatBN7.26100,168,943 - 100,250,718 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6100,170,306 - 100,250,705 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6100,336,375 - 100,417,637 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06100,636,070 - 100,717,332 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06100,010,595 - 100,091,583 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06104,069,853 - 104,250,177 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6104,068,547 - 104,250,174 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06112,245,665 - 112,422,114 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46104,285,081 - 104,366,257 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16104,288,214 - 104,369,709 (+)NCBI
Celera698,028,274 - 98,109,010 (+)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,4-D  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
Azoxymethane  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
C60 fullerene  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fenvalerate  (EXP)
fructose  (ISO)
furan  (EXP)
gentamycin  (EXP)
glucose  (ISO)
hydroxyurea  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
ketamine  (EXP)
lipopolysaccharide  (ISO)
malathion  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methylmercury chloride  (ISO)
Muraglitazar  (EXP)
N-methyl-N-nitrosourea  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
paracetamol  (EXP)
pentanal  (ISO)
permethrin  (ISO)
phenylmercury acetate  (ISO)
pioglitazone  (ISO)
propanal  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
Tesaglitazar  (EXP)
testosterone  (EXP,ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (EXP)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IBA,IEA)
Golgi membrane  (IEA)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22186971   PMID:23376485  


Genomics

Comparative Map Data
Galnt16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86105,900,987 - 105,982,039 (+)NCBIGRCr8
mRatBN7.26100,168,943 - 100,250,718 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6100,170,306 - 100,250,705 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6100,336,375 - 100,417,637 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06100,636,070 - 100,717,332 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06100,010,595 - 100,091,583 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06104,069,853 - 104,250,177 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6104,068,547 - 104,250,174 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06112,245,665 - 112,422,114 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46104,285,081 - 104,366,257 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16104,288,214 - 104,369,709 (+)NCBI
Celera698,028,274 - 98,109,010 (+)NCBICelera
Cytogenetic Map6q24NCBI
GALNT16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381469,259,631 - 69,386,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1469,259,277 - 69,357,033 (+)EnsemblGRCh38hg38GRCh38
GRCh371469,726,875 - 69,823,759 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361468,796,668 - 68,890,936 (+)NCBINCBI36Build 36hg18NCBI36
Celera1449,790,817 - 49,885,331 (+)NCBICelera
Cytogenetic Map14q24.1NCBI
HuRef1449,956,243 - 49,989,939 (+)NCBIHuRef
HuRef1449,897,361 - 49,897,652 (+)NCBIHuRef
CHM1_11469,664,834 - 69,759,335 (+)NCBICHM1_1
T2T-CHM13v2.01463,472,675 - 63,600,865 (+)NCBIT2T-CHM13v2.0
Galnt16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391280,565,245 - 80,650,672 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1280,565,051 - 80,677,746 (+)EnsemblGRCm39 Ensembl
GRCm381280,518,471 - 80,603,898 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1280,518,277 - 80,630,972 (+)EnsemblGRCm38mm10GRCm38
MGSCv371281,619,977 - 81,704,883 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361281,437,125 - 81,522,744 (+)NCBIMGSCv36mm8
Celera1281,984,033 - 82,069,080 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1236.79NCBI
Galnt16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554661,016,535 - 1,044,082 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554661,016,580 - 1,044,077 (-)NCBIChiLan1.0ChiLan1.0
GALNT16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21570,381,627 - 70,478,912 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11469,598,395 - 69,692,870 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01449,851,234 - 49,945,968 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11468,785,858 - 68,819,572 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1468,781,620 - 68,819,572 (+)Ensemblpanpan1.1panPan2
GALNT16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1843,099,717 - 43,189,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl843,042,563 - 43,187,969 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha842,786,236 - 42,879,471 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0843,326,601 - 43,420,086 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl843,329,200 - 43,422,845 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1842,941,024 - 43,034,591 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0843,015,759 - 43,108,997 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0843,375,070 - 43,468,317 (+)NCBIUU_Cfam_GSD_1.0
Galnt16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864061,607,794 - 61,694,423 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649512,497,794 - 12,583,882 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649512,496,743 - 12,583,905 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl792,929,069 - 93,041,442 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1792,928,834 - 93,041,446 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2799,153,542 - 99,263,627 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12446,497,879 - 46,608,432 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2446,497,915 - 46,594,679 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605334,722,971 - 34,821,193 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473431,717,126 - 31,804,452 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473431,717,210 - 31,803,365 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Galnt16
810 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:737
Count of miRNA genes:276
Interacting mature miRNAs:349
Transcripts:ENSRNOT00000006460
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)689762877106752806Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1300076Glom8Glomerulus QTL 879e-09kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat

Markers in Region
D6Rat192  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr86105,967,637 - 105,967,845 (+)Marker Load Pipeline
mRatBN7.26100,236,312 - 100,236,520 (+)MAPPERmRatBN7.2
Rnor_6.06104,235,777 - 104,235,984NCBIRnor6.0
Rnor_5.06112,407,714 - 112,407,921UniSTSRnor5.0
RGSC_v3.46104,351,856 - 104,352,064RGDRGSC3.4
RGSC_v3.46104,351,857 - 104,352,064UniSTSRGSC3.4
RGSC_v3.16104,355,313 - 104,355,520RGD
Celera698,094,622 - 98,094,819UniSTS
RH 3.4 Map6727.9UniSTS
RH 3.4 Map6727.9RGD
RH 2.0 Map6931.9RGD
SHRSP x BN Map659.0098RGD
Cytogenetic Map6q24UniSTS
BF406334  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr86105,907,087 - 105,907,264 (+)Marker Load Pipeline
mRatBN7.26100,175,755 - 100,175,932 (+)MAPPERmRatBN7.2
Rnor_6.06104,076,745 - 104,076,921NCBIRnor6.0
Rnor_5.06112,251,451 - 112,251,627UniSTSRnor5.0
RGSC_v3.46104,290,669 - 104,290,845UniSTSRGSC3.4
Celera698,033,665 - 98,033,841UniSTS
RH 3.4 Map6716.4UniSTS
Cytogenetic Map6q24UniSTS
AW526869  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26100,170,429 - 100,170,613 (+)MAPPERmRatBN7.2
Rnor_6.06104,071,419 - 104,071,602NCBIRnor6.0
Rnor_5.06112,246,125 - 112,246,308UniSTSRnor5.0
RGSC_v3.46104,285,343 - 104,285,526UniSTSRGSC3.4
Celera698,028,336 - 98,028,519UniSTS
RH 3.4 Map6717.0UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000006460   ⟹   ENSRNOP00000006460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6100,170,306 - 100,250,705 (+)Ensembl
Rnor_6.0 Ensembl6104,068,547 - 104,250,174 (+)Ensembl
RefSeq Acc Id: NM_001100863   ⟹   NP_001094333
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86105,901,700 - 105,982,039 (+)NCBI
mRatBN7.26100,170,368 - 100,250,716 (+)NCBI
Rnor_6.06104,071,357 - 104,250,177 (+)NCBI
Rnor_5.06112,245,665 - 112,422,114 (+)NCBI
Celera698,028,274 - 98,109,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240288   ⟹   XP_006240350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86105,900,987 - 105,982,039 (+)NCBI
mRatBN7.26100,168,943 - 100,250,718 (+)NCBI
Rnor_6.06104,069,853 - 104,250,177 (+)NCBI
Rnor_5.06112,245,665 - 112,422,114 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001094333 (Get FASTA)   NCBI Sequence Viewer  
  XP_006240350 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91351 (Get FASTA)   NCBI Sequence Viewer  
  EDL81381 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006460
  ENSRNOP00000006460.5
RefSeq Acc Id: NP_001094333   ⟸   NM_001100863
- UniProtKB: F1LQN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240350   ⟸   XM_006240288
- Peptide Label: isoform X1
- UniProtKB: F1LQN1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006460   ⟸   ENSRNOT00000006460
Protein Domains
Ricin B lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LQN1-F1-model_v2 AlphaFold F1LQN1 1-558 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310202 AgrOrtholog
BioCyc Gene G2FUF-36911 BioCyc
BioCyc Pathway PWY-7433 [mucin core 1 and core 2 O-glycosylation] BioCyc
  PWY-7435 [mucin core 3 and core 4 O-glycosylation] BioCyc
BioCyc Pathway Image PWY-7433 BioCyc
  PWY-7435 BioCyc
Ensembl Genes ENSRNOG00000004589 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006460 ENTREZGENE
  ENSRNOT00000006460.8 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
  Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7317097 IMAGE-MGC_LOAD
InterPro GalNAc-T UniProtKB/TrEMBL
  Glyco_trans_2 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
KEGG Report rno:362760 UniProtKB/TrEMBL
MGC_CLONE MGC:109380 IMAGE-MGC_LOAD
NCBI Gene 362760 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 16 UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PhenoGen Galnt16 PhenoGen
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004589 RatGTEx
SMART RICIN UniProtKB/TrEMBL
Superfamily-SCOP RicinB_like UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt F1LQN1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-21 Galnt16  polypeptide N-acetylgalactosaminyltransferase 16  Galnt16  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-31 Galnt16  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16  Galntl1  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Galntl1  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1  Galntl1_predicted  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Galntl1_predicted  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED