Ino80c (INO80 complex subunit C) - Rat Genome Database

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Pathways
Gene: Ino80c (INO80 complex subunit C) Rattus norvegicus
Analyze
Symbol: Ino80c
Name: INO80 complex subunit C
RGD ID: 1310199
Description: Predicted to be involved in several processes, including regulation of embryonic development; regulation of nucleobase-containing compound metabolic process; and telomere maintenance. Predicted to be located in cytosol; fibrillar center; and nucleoplasm. Predicted to be part of Ino80 complex and MLL1 complex. Orthologous to human INO80C (INO80 complex subunit C); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; INTERACTS WITH bisphenol A; caffeine; flutamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC291737; MGC109171; RGD1310199; similar to RIKEN cDNA D030070L09
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,653,508 - 15,752,455 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1815,653,511 - 15,668,144 (-)EnsemblGRCr8
mRatBN7.21815,378,764 - 15,398,574 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,378,770 - 15,393,403 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1815,565,979 - 15,580,823 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,348,684 - 16,363,528 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,638,515 - 15,653,207 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01815,995,005 - 16,009,639 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,995,000 - 16,009,710 (-)Ensemblrn6Rnor6.0
Rnor_5.01815,757,172 - 15,771,806 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41815,863,573 - 15,878,207 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1815,326,724 - 15,341,400 (-)NCBICelera
RGSC_v3.11815,890,219 - 15,904,853 (-)NCBI
Cytogenetic Map18p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
fibrillar center  (IEA,ISO)
Ino80 complex  (IBA,IEA,ISO)
MLL1 complex  (IEA,ISO,ISS)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Comprehensive gene review and curation RGD comprehensive gene curation
4. The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics. Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:15960975   PMID:21303910  


Genomics

Comparative Map Data
Ino80c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,653,508 - 15,752,455 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1815,653,511 - 15,668,144 (-)EnsemblGRCr8
mRatBN7.21815,378,764 - 15,398,574 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,378,770 - 15,393,403 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1815,565,979 - 15,580,823 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,348,684 - 16,363,528 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,638,515 - 15,653,207 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01815,995,005 - 16,009,639 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,995,000 - 16,009,710 (-)Ensemblrn6Rnor6.0
Rnor_5.01815,757,172 - 15,771,806 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41815,863,573 - 15,878,207 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1815,326,724 - 15,341,400 (-)NCBICelera
RGSC_v3.11815,890,219 - 15,904,853 (-)NCBI
Cytogenetic Map18p12NCBI
INO80C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381835,468,333 - 35,497,960 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1835,452,230 - 35,497,979 (-)Ensemblhg38GRCh38
GRCh371833,048,297 - 33,077,924 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,302,289 - 31,331,953 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341831,302,295 - 31,331,953NCBI
Celera1829,856,143 - 29,885,819 (-)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1829,908,353 - 29,937,720 (-)NCBIHuRef
CHM1_11832,975,385 - 33,005,073 (-)NCBICHM1_1
T2T-CHM13v2.01835,659,720 - 35,689,378 (-)NCBIT2T-CHM13v2.0
Ino80c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,237,818 - 24,254,876 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,237,814 - 24,255,010 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381824,104,761 - 24,121,819 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1824,104,757 - 24,121,953 (-)Ensemblmm10GRCm38
MGSCv371824,263,262 - 24,280,320 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361824,247,771 - 24,264,829 (-)NCBIMGSCv36mm8
Celera1824,594,754 - 24,611,292 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.74NCBI
Ino80c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,189,943 - 22,210,658 (-)Ensembl
ChiLan1.0NW_00495540222,189,943 - 22,210,315 (-)NCBIChiLan1.0ChiLan1.0
INO80C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21752,856,561 - 52,886,393 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11838,549,152 - 38,578,976 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01828,686,112 - 28,715,946 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,274,331 - 32,319,177 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,260,924 - 32,304,152 (-)EnsemblpanPan2panpan1.1
INO80C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,569,954 - 54,586,902 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,569,972 - 54,586,782 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha753,994,976 - 54,012,142 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0754,540,829 - 54,558,010 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl754,540,845 - 54,557,893 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1754,223,695 - 54,240,872 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0754,246,861 - 54,264,015 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0754,540,279 - 54,557,460 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ino80c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,305,491 - 50,322,123 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,632,870 - 9,649,527 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,632,870 - 9,649,525 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INO80C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,262,227 - 119,285,779 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16119,262,488 - 119,285,852 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26111,721,259 - 111,744,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
INO80C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,282,846 - 45,311,885 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,282,812 - 45,311,870 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605019,780,493 - 19,809,933 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ino80c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,843,065 - 9,862,137 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247799,843,068 - 9,861,959 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Ino80c
744 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:257
Count of miRNA genes:168
Interacting mature miRNAs:208
Transcripts:ENSRNOT00000022169
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181221923726822399Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181564228031610627Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)18125071266Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228031610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181221923726822399Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18125022372Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181221923726822399Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181221923726822399Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181221923726822399Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181221923726822399Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181221923726822399Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
RH133170  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21815,380,454 - 15,380,641 (+)MAPPERmRatBN7.2
Rnor_6.01815,996,691 - 15,996,877NCBIRnor6.0
Rnor_5.01815,758,858 - 15,759,044UniSTSRnor5.0
RGSC_v3.41815,865,259 - 15,865,445UniSTSRGSC3.4
Celera1815,328,410 - 15,328,596UniSTS
RH 3.4 Map18192.4UniSTS
Cytogenetic Map18p12UniSTS
RH130469  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21815,378,874 - 15,379,055 (+)MAPPERmRatBN7.2
Rnor_6.01815,995,111 - 15,995,291NCBIRnor6.0
Rnor_5.01815,757,278 - 15,757,458UniSTSRnor5.0
RGSC_v3.41815,863,679 - 15,863,859UniSTSRGSC3.4
Celera1815,326,830 - 15,327,010UniSTS
RH 3.4 Map18181.4UniSTS
Cytogenetic Map18p12UniSTS
RH138450  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21815,383,934 - 15,384,175 (+)MAPPERmRatBN7.2
Rnor_6.01816,000,171 - 16,000,411NCBIRnor6.0
Rnor_5.01815,762,338 - 15,762,578UniSTSRnor5.0
RGSC_v3.41815,868,739 - 15,868,979UniSTSRGSC3.4
Celera1815,331,888 - 15,332,128UniSTS
RH 3.4 Map18182.4UniSTS
Cytogenetic Map18p12UniSTS
MARC_13470-13471:1002300368:2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21815,385,059 - 15,386,080 (+)MAPPERmRatBN7.2
Rnor_6.01816,001,296 - 16,002,316NCBIRnor6.0
Rnor_5.01815,763,463 - 15,764,483UniSTSRnor5.0
RGSC_v3.41815,869,864 - 15,870,884UniSTSRGSC3.4
Celera1815,333,013 - 15,334,033UniSTS
Cytogenetic Map18p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000022169   ⟹   ENSRNOP00000022169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1815,653,511 - 15,668,144 (-)Ensembl
mRatBN7.2 Ensembl1815,378,770 - 15,393,403 (-)Ensembl
Rnor_6.0 Ensembl1815,995,000 - 16,009,710 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118512   ⟹   ENSRNOP00000093588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1815,653,511 - 15,668,052 (-)Ensembl
mRatBN7.2 Ensembl1815,378,770 - 15,393,311 (-)Ensembl
RefSeq Acc Id: NM_001017446   ⟹   NP_001017446
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,653,510 - 15,668,144 (-)NCBI
mRatBN7.21815,378,769 - 15,393,403 (-)NCBI
Rnor_6.01815,995,005 - 16,009,639 (-)NCBI
Rnor_5.01815,757,172 - 15,771,806 (-)NCBI
RGSC_v3.41815,863,573 - 15,878,207 (-)RGD
Celera1815,326,724 - 15,341,400 (-)RGD
Sequence:
RefSeq Acc Id: XM_039096736   ⟹   XP_038952664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,653,508 - 15,752,455 (-)NCBI
mRatBN7.21815,378,764 - 15,398,574 (-)NCBI
RefSeq Acc Id: XM_063277257   ⟹   XP_063133327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,653,508 - 15,752,455 (-)NCBI
RefSeq Acc Id: NP_001017446   ⟸   NM_001017446
- UniProtKB: Q5BJY3 (UniProtKB/Swiss-Prot),   A6J2J9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022169   ⟸   ENSRNOT00000022169
RefSeq Acc Id: XP_038952664   ⟸   XM_039096736
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000093588   ⟸   ENSRNOT00000118512
RefSeq Acc Id: XP_063133327   ⟸   XM_063277257
- Peptide Label: isoform X2
Protein Domains
Vps72/YL1 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BJY3-F1-model_v2 AlphaFold Q5BJY3 1-191 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310199 AgrOrtholog
BioCyc Gene G2FUF-8163 BioCyc
Ensembl Genes ENSRNOG00000016532 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022169 ENTREZGENE
  ENSRNOT00000022169.7 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7097077 IMAGE-MGC_LOAD
  IMAGE:7192011 IMAGE-MGC_LOAD
InterPro INO80C/Ies6 UniProtKB/Swiss-Prot
  Vps72/YL1_C UniProtKB/Swiss-Prot
KEGG Report rno:291737 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109171 IMAGE-MGC_LOAD
  MGC:94762 IMAGE-MGC_LOAD
NCBI Gene 291737 ENTREZGENE
PANTHER INO80 COMPLEX SUBUNIT C UniProtKB/Swiss-Prot
  PTHR31200 UniProtKB/Swiss-Prot
Pfam YL1_C UniProtKB/Swiss-Prot
PhenoGen Ino80c PhenoGen
RatGTEx ENSRNOG00000016532 RatGTEx
SMART YL1_C UniProtKB/Swiss-Prot
UniProt A0A8I6AX91_RAT UniProtKB/TrEMBL
  A6J2J9 ENTREZGENE, UniProtKB/TrEMBL
  IN80C_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-09 Ino80c  INO80 complex subunit C  RGD1310199  similar to RIKEN cDNA D030070L09  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1310199  similar to RIKEN cDNA D030070L09  RGD1310199_predicted  similar to RIKEN cDNA D030070L09 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310199_predicted  similar to RIKEN cDNA D030070L09 (predicted)  LOC291737_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC291737_predicted  similar to RIKEN cDNA D030070L09 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL