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Gene: Cplane1 (ciliogenesis and planar polarity effector complex subunit 1) Rattus norvegicus

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Symbol:

Cplane1

Name:

ciliogenesis and planar polarity effector complex subunit 1

RGD ID:

1310081

Description:

Predicted to be involved in cilium assembly. Predicted to act upstream of or within several processes, including embryonic digit morphogenesis; heart development; and protein localization to ciliary transition zone. Predicted to be active in ciliary transition zone. Human ortholog(s) of this gene implicated in Joubert syndrome 17 and Joubert syndrome with orofaciodigital defect. Orthologous to human CPLANE1 (ciliogenesis and planar polarity effector complex subunit 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ciliogenesis and planar polarity effector 1; hypothetical protein LOC679830; hypothetical protein LOC679859; LOC294784; LOC679830; LOC679859; RGD1310081; RGD1310081_predicted; similar to hypothetical protein FLJ13231; similar to hypothetical protein FLJ13231 (predicted); uncharacterized protein C5orf42 homolog; uncharacterized protein LOC310137

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	58,996,119 - 59,096,817 (+)	NCBI		GRCr8
mRatBN7.2	2	57,269,195 - 57,369,580 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	57,268,884 - 57,369,500 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	57,274,175 - 57,350,003 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0	2	57,444,373 - 57,472,465 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	57,276,919 - 57,348,481 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	78,930,709 - 78,957,363 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	2	77,281,470 - 77,355,251 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	57,781,798 - 57,879,499 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	57,786,118 - 57,807,727 (+)	NCBI
Celera	2	52,883,480 - 52,984,165 (+)	NCBI		Celera
Cytogenetic Map	2	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cornelia de Lange syndrome 1 (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

high grade glioma (ISO)

Jaundice (ISO)

Joubert syndrome (ISO)

Joubert syndrome 1 (ISO)

Joubert Syndrome 17 (ISO,ISS)

Joubert syndrome with orofaciodigital defect (ISO)

nephronophthisis (ISO)

nephronophthisis 1 (ISO)

Neurodevelopmental Disorders (ISO)

nuclear type mitochondrial complex I deficiency 20 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-palmitoylglycerol (ISO)

acrolein (ISO)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

alpha-Zearalanol (EXP)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

clobetasol (ISO)

doxorubicin (ISO)

endosulfan (EXP)

fenvalerate (EXP)

glycidyl methacrylate (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (EXP)

potassium chromate (ISO)

rotenone (EXP)

sulforaphane (ISO)

testosterone (EXP)

thioacetamide (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cardiac septum development (ISO)

cerebellum development (ISO)

cilium assembly (IBA,ISO)

coronary vasculature development (ISO)

embryonic digit morphogenesis (ISO)

establishment of planar polarity (ISO)

heart development (ISO)

kidney development (ISO)

protein localization to ciliary transition zone (ISO)

roof of mouth development (ISO)

ventricular septum development (ISO)

Cellular Component

ciliary transition zone (IBA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Novel Jbts17 mutant mouse model of Joubert syndrome with cilia transition zone defects and cerebellar and other ciliopathy related anomalies.	Damerla RR, etal., Hum Mol Genet. 2015 Jul 15;24(14):3994-4005. doi: 10.1093/hmg/ddv137. Epub 2015 Apr 15.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:25807483

Genomics

Comparative Map Data

Cplane1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	58,996,119 - 59,096,817 (+)	NCBI		GRCr8
mRatBN7.2	2	57,269,195 - 57,369,580 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	57,268,884 - 57,369,500 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	57,274,175 - 57,350,003 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0	2	57,444,373 - 57,472,465 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	57,276,919 - 57,348,481 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	78,930,709 - 78,957,363 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	2	77,281,470 - 77,355,251 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	57,781,798 - 57,879,499 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	57,786,118 - 57,807,727 (+)	NCBI
Celera	2	52,883,480 - 52,984,165 (+)	NCBI		Celera
Cytogenetic Map	2	q16	NCBI

CPLANE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	37,075,669 - 37,249,376 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	37,106,228 - 37,249,376 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	37,106,337 - 37,249,478 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	37,142,087 - 37,249,612 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	36,993,297 - 37,136,467 (-)	NCBI		Celera
Cytogenetic Map	5	p13.2	NCBI
HuRef	5	37,059,009 - 37,201,999 (-)	NCBI		HuRef
CHM1_1	5	37,109,131 - 37,252,316 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	37,319,464 - 37,499,342 (-)	NCBI		T2T-CHM13v2.0

Cplane1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	8,198,509 - 8,300,642 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	8,198,590 - 8,300,642 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	8,169,025 - 8,271,158 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	8,169,106 - 8,271,158 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	8,119,106 - 8,221,158 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	8,116,266 - 8,218,373 (+)	NCBI		MGSCv36	mm8
Celera	15	8,013,530 - 8,115,870 (+)	NCBI		Celera
Cytogenetic Map	15	A1	NCBI
cM Map	15	3.82	NCBI

Cplane1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	21,868,017 - 21,983,747 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955426	21,867,876 - 21,991,889 (-)	NCBI	ChiLan1.0	ChiLan1.0

CPLANE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	73,086,158 - 73,229,014 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	71,239,850 - 71,382,655 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	73,122,305 - 73,265,343 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	78,402,466 - 78,544,807 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	78,402,466 - 78,544,807 (+)	Ensembl	panpan1.1		panPan2

CPLANE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	71,435,994 - 71,567,567 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	71,430,575 - 71,567,267 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	71,040,347 - 71,177,378 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	71,939,865 - 72,077,171 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	71,939,851 - 72,077,149 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	71,687,689 - 71,824,420 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	71,808,054 - 71,946,062 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	72,340,676 - 72,477,998 (+)	NCBI		UU_Cfam_GSD_1.0

Cplane1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	226,524,559 - 226,665,360 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936518	4,706,500 - 4,847,316 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936518	4,706,496 - 4,847,283 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CPLANE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	22,380,326 - 22,500,998 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	22,381,001 - 22,501,052 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	23,534,129 - 23,653,296 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CPLANE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	35,981,299 - 36,131,575 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	35,979,110 - 36,130,565 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	26,323,302 - 26,479,971 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cplane1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	17,763,585 - 17,855,954 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624759	17,763,200 - 17,879,603 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cplane1
289 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	80
Count of miRNA genes:	65
Interacting mature miRNAs:	65
Transcripts:	ENSRNOT00000063899
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6480225	Gdil1	Gastrointestinal dilation QTL 1			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	56660879	74786777	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43162366	148478373	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	22384627	67384627	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	35023117	80023117	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
10755434	Coatc7	Coat color QTL 7		0.04794	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	30648065	75648065	Rat
2293676	Bmd19	Bone mineral density QTL 19	10.7	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	43162366	111362592	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
2293682	Bmd24	Bone mineral density QTL 24	8.9	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	2	43162366	111362592	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	20304672	65304672	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56531912	59324719	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	38573329	122609194	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
10402051	Gdil2	Gastrointestinal dilation QTL 2			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	24903853	74786777	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	27157160	72157160	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	40067944	102785628	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
631208	Bw1	Body weight QTL1	5.09		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	2	43171017	83575226	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	42804607	60653831	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	5873687	102844969	Rat
2300168	Bmd47	Bone mineral density QTL 47	6.6	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	2	20662448	65662448	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	81754745	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1357990	Ael1	Aortic elastin QTL 1	3.1	0.00091	aorta elastin amount (VT:0003905)	aortic elastin	2	19076825	64076825	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1354592	Rf50	Renal function QTL 50	3.5		urine output (VT:0003620)	timed urine volume (CMO:0000260)	2	53822747	74786777	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26917817	136917119	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	28484589	169504100	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	16491740	61491740	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	28484589	169504100	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	35134841	88029593	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	127469484	Rat

Markers in Region

RH143089

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	57,301,723 - 57,301,988 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	57,306,849 - 57,307,113	NCBI	Rnor6.0
Rnor_5.0	2	77,314,151 - 77,314,415	UniSTS	Rnor5.0
RGSC_v3.4	2	57,811,779 - 57,812,043	UniSTS	RGSC3.4
Celera	2	52,916,304 - 52,916,568	UniSTS
RH 3.4 Map	2	331.9	UniSTS
Cytogenetic Map	2	q16	UniSTS

RH143471

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	57,310,492 - 57,310,668 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	57,315,687 - 57,315,862	NCBI	Rnor6.0
Rnor_5.0	2	77,322,657 - 77,322,832	UniSTS	Rnor5.0
RGSC_v3.4	2	57,820,331 - 57,820,506	UniSTS	RGSC3.4
Celera	2	52,925,105 - 52,925,280	UniSTS
RH 3.4 Map	2	283.7	UniSTS
Cytogenetic Map	2	q16	UniSTS

RH138393

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	57,369,322 - 57,369,447 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	57,472,204 - 57,472,328	NCBI	Rnor6.0
Rnor_5.0	2	78,957,102 - 78,957,226	UniSTS	Rnor5.0
RGSC_v3.4	2	57,879,238 - 57,879,362	UniSTS	RGSC3.4
Celera	2	52,983,904 - 52,984,028	UniSTS
RH 3.4 Map	2	331.7	UniSTS
Cytogenetic Map	2	q16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	90	89	58	25	58	6	217	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000063899 ⟹ ENSRNOP00000060886

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	57,268,884 - 57,369,500 (+)	Ensembl
Rnor_6.0 Ensembl	2	57,276,919 - 57,348,481 (+)	Ensembl

RefSeq Acc Id:

NM_001427186 ⟹ NP_001414115

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,996,130 - 59,096,817 (+)	NCBI

RefSeq Acc Id:

XM_039103529 ⟹ XP_038959457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,996,119 - 59,096,817 (+)	NCBI
mRatBN7.2	2	57,269,195 - 57,369,580 (+)	NCBI

RefSeq Acc Id:

XM_039103531 ⟹ XP_038959459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,996,119 - 59,096,817 (+)	NCBI
mRatBN7.2	2	57,269,195 - 57,369,580 (+)	NCBI

RefSeq Acc Id:

XM_039103535 ⟹ XP_038959463

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	59,030,246 - 59,096,817 (+)	NCBI
mRatBN7.2	2	57,303,005 - 57,369,580 (+)	NCBI

RefSeq Acc Id:

XM_063281736 ⟹ XP_063137806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,996,119 - 59,096,817 (+)	NCBI

RefSeq Acc Id:

XM_063281737 ⟹ XP_063137807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,996,119 - 59,096,817 (+)	NCBI

RefSeq Acc Id:

XM_063281738 ⟹ XP_063137808

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,996,119 - 59,096,817 (+)	NCBI

RefSeq Acc Id:

XM_063281739 ⟹ XP_063137809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,996,119 - 59,096,817 (+)	NCBI

RefSeq Acc Id:

XM_063281740 ⟹ XP_063137810

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,996,119 - 59,096,817 (+)	NCBI

RefSeq Acc Id:

XM_063281741 ⟹ XP_063137811

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,996,119 - 59,096,817 (+)	NCBI

RefSeq Acc Id:

XM_063281742 ⟹ XP_063137812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,996,119 - 59,086,819 (+)	NCBI

RefSeq Acc Id:

XM_063281743 ⟹ XP_063137813

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	58,996,438 - 59,058,683 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414115	(Get FASTA)	NCBI Sequence Viewer
	XP_038959457	(Get FASTA)	NCBI Sequence Viewer
	XP_038959459	(Get FASTA)	NCBI Sequence Viewer
	XP_038959463	(Get FASTA)	NCBI Sequence Viewer
	XP_063137806	(Get FASTA)	NCBI Sequence Viewer
	XP_063137807	(Get FASTA)	NCBI Sequence Viewer
	XP_063137808	(Get FASTA)	NCBI Sequence Viewer
	XP_063137809	(Get FASTA)	NCBI Sequence Viewer
	XP_063137810	(Get FASTA)	NCBI Sequence Viewer
	XP_063137811	(Get FASTA)	NCBI Sequence Viewer
	XP_063137812	(Get FASTA)	NCBI Sequence Viewer
	XP_063137813	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83908	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000060886.4

Ensembl Acc Id:

ENSRNOP00000060886 ⟸ ENSRNOT00000063899

RefSeq Acc Id:	XP_038959457 ⟸ XM_039103529
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038959459 ⟸ XM_039103531
- Peptide Label:	isoform X11
- UniProtKB:	D3ZK35 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038959463 ⟸ XM_039103535
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063137806 ⟸ XM_063281736
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063137811 ⟸ XM_063281741
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063137808 ⟸ XM_063281738
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063137807 ⟸ XM_063281737
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063137809 ⟸ XM_063281739
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063137810 ⟸ XM_063281740
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063137812 ⟸ XM_063281742
- Peptide Label:	isoform X8

RefSeq Acc Id:

NP_001414115 ⟸ NM_001427186

RefSeq Acc Id:	XP_063137813 ⟸ XM_063281743
- Peptide Label:	isoform X9

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZK35-F1-model_v2	AlphaFold	D3ZK35	1-2628	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310081	AgrOrtholog
BioCyc Gene	G2FUF-54123	BioCyc
Ensembl Genes	ENSRNOG00000042118	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000063899.4	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134040	IMAGE-MGC_LOAD
InterPro	Joubert	UniProtKB/TrEMBL
MGC_CLONE	MGC:95272	IMAGE-MGC_LOAD
NCBI Gene	Cplane1	ENTREZGENE
PANTHER	CILIOGENESIS AND PLANAR POLARITY EFFECTOR 1	UniProtKB/TrEMBL
	PTHR14492	UniProtKB/TrEMBL
Pfam	Joubert	UniProtKB/TrEMBL
PhenoGen	Cplane1	PhenoGen
RatGTEx	ENSRNOG00000042118	RatGTEx
UniProt	D3ZK35	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-12-09	Cplane1	ciliogenesis and planar polarity effector complex subunit 1	Cplane1	ciliogenesis and planar polarity effector 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2018-03-22	Cplane1	ciliogenesis and planar polarity effector 1	RGD1310081	similar to hypothetical protein FLJ13231	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-29	RGD1310081	similar to hypothetical protein FLJ13231	LOC679830	hypothetical protein LOC679830	Data merged from RGD:1583658	737654	PROVISIONAL
2015-07-29	RGD1310081	similar to hypothetical protein FLJ13231	LOC679859	hypothetical protein LOC679859	Data merged from RGD:1583630	737654	PROVISIONAL
2008-04-30	RGD1310081	similar to hypothetical protein FLJ13231	RGD1310081_predicted	similar to hypothetical protein FLJ13231 (predicted)	'predicted' is removed	2292626	APPROVED
2008-01-09	LOC679830	hypothetical protein LOC679830	LOC679442	hypothetical protein LOC679442	Data merged from RGD:1588321	1643240	APPROVED
2008-01-09	LOC679859	hypothetical protein LOC679859	LOC679460	hypothetical protein LOC679460	Data merged from RGD:1588306	1643240	APPROVED
2006-11-19	LOC679830	hypothetical protein LOC679830			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC679859	hypothetical protein LOC679859			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC679460	hypothetical protein LOC679460			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC679442	hypothetical protein LOC679442			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	RGD1310081_predicted	similar to hypothetical protein FLJ13231 (predicted)	LOC294784_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC294784_predicted	similar to hypothetical protein FLJ13231 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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