Ndfip1 (Nedd4 family interacting protein 1) - Rat Genome Database

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Gene: Ndfip1 (Nedd4 family interacting protein 1) Rattus norvegicus
Analyze
Symbol: Ndfip1
Name: Nedd4 family interacting protein 1
RGD ID: 1310053
Description: Predicted to enable WW domain binding activity. Predicted to be involved in several processes, including intracellular iron ion homeostasis; positive regulation of canonical NF-kappaB signal transduction; and positive regulation of protein ubiquitination. Predicted to act upstream of or within several processes, including negative regulation of interleukin-4 production; negative regulation of type 2 immune response; and regulation of lymphocyte activation. Predicted to be located in cell cortex. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Orthologous to human NDFIP1 (Nedd4 family interacting protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291609; NEDD4 family-interacting protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,516,931 - 30,567,199 (+)NCBIGRCr8
mRatBN7.21830,265,808 - 30,316,068 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1830,250,613 - 30,322,311 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1830,370,117 - 30,420,290 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01831,133,009 - 31,183,042 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01830,468,294 - 30,518,347 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01831,574,759 - 31,625,286 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,574,821 - 31,625,274 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01831,252,665 - 31,303,463 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41831,351,538 - 31,401,736 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11831,378,183 - 31,428,381 (+)NCBI
Celera1829,904,818 - 29,954,984 (+)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
protein binding  (IPI,ISO)
WW domain binding  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Differential regulation of Nedd4 ubiquitin ligases and their adaptor protein Ndfip1 in a rat model of ischemic stroke. Lackovic J, etal., Exp Neurol. 2012 May;235(1):326-35. Epub 2012 Mar 5.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11748237   PMID:12761501   PMID:15489334   PMID:17137798   PMID:18776082   PMID:22871113   PMID:25631046   PMID:37023120  


Genomics

Comparative Map Data
Ndfip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,516,931 - 30,567,199 (+)NCBIGRCr8
mRatBN7.21830,265,808 - 30,316,068 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1830,250,613 - 30,322,311 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1830,370,117 - 30,420,290 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01831,133,009 - 31,183,042 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01830,468,294 - 30,518,347 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01831,574,759 - 31,625,286 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,574,821 - 31,625,274 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01831,252,665 - 31,303,463 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41831,351,538 - 31,401,736 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11831,378,183 - 31,428,381 (+)NCBI
Celera1829,904,818 - 29,954,984 (+)NCBICelera
Cytogenetic Map18p11NCBI
NDFIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385142,108,779 - 142,154,440 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5142,108,779 - 142,154,440 (+)EnsemblGRCh38hg38GRCh38
GRCh375141,488,344 - 141,534,005 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365141,468,508 - 141,513,128 (+)NCBINCBI36Build 36hg18NCBI36
Build 345141,468,507 - 141,513,128NCBI
Celera5137,569,742 - 137,615,392 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5136,635,249 - 136,680,894 (+)NCBIHuRef
CHM1_15140,922,028 - 140,967,670 (+)NCBICHM1_1
T2T-CHM13v2.05142,639,297 - 142,684,953 (+)NCBIT2T-CHM13v2.0
Ndfip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,551,960 - 38,598,250 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1838,543,449 - 38,598,356 (+)EnsemblGRCm39 Ensembl
GRCm381838,418,907 - 38,465,197 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1838,410,396 - 38,465,303 (+)EnsemblGRCm38mm10GRCm38
MGSCv371838,578,629 - 38,624,060 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361838,536,434 - 38,586,631 (+)NCBIMGSCv36mm8
Celera1839,761,460 - 39,806,803 (+)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1820.32NCBI
Ndfip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541511,643,846 - 11,666,131 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541511,643,846 - 11,666,131 (-)NCBIChiLan1.0ChiLan1.0
NDFIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24137,354,843 - 137,398,983 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15135,494,488 - 135,538,959 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05137,467,161 - 137,511,569 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15143,596,345 - 143,622,913 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5143,600,789 - 143,622,913 (+)Ensemblpanpan1.1panPan2
NDFIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,978,148 - 37,065,247 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,961,024 - 37,064,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha234,065,772 - 34,117,671 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,468,313 - 37,520,209 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,467,811 - 37,521,377 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,543,424 - 34,595,458 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0235,354,316 - 35,406,223 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0236,162,143 - 36,214,039 (+)NCBIUU_Cfam_GSD_1.0
Ndfip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213150,479,497 - 150,529,371 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650412,053,470 - 12,103,346 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDFIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2143,629,783 - 143,734,520 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12143,688,946 - 143,734,523 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,890,960 - 149,924,216 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDFIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12344,737,432 - 44,783,409 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2344,737,422 - 44,775,657 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603433,067,657 - 33,113,926 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndfip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247741,303,773 - 1,353,253 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247741,245,587 - 1,353,253 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ndfip1
207 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:404
Count of miRNA genes:228
Interacting mature miRNAs:281
Transcripts:ENSRNOT00000018499
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000018499   ⟹   ENSRNOP00000018499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1830,265,869 - 30,322,311 (+)Ensembl
Rnor_6.0 Ensembl1831,574,821 - 31,625,274 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096236   ⟹   ENSRNOP00000078162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1830,291,465 - 30,322,307 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097966   ⟹   ENSRNOP00000087620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1830,290,743 - 30,322,307 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104237   ⟹   ENSRNOP00000093040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1830,250,613 - 30,322,307 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107021   ⟹   ENSRNOP00000095556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1830,265,864 - 30,316,027 (+)Ensembl
RefSeq Acc Id: NM_001013059   ⟹   NP_001013077
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,517,025 - 30,567,199 (+)NCBI
mRatBN7.21830,265,873 - 30,316,057 (+)NCBI
Rnor_6.01831,574,821 - 31,625,275 (+)NCBI
Rnor_5.01831,252,665 - 31,303,463 (+)NCBI
RGSC_v3.41831,351,538 - 31,401,736 (+)RGD
Celera1829,904,818 - 29,954,984 (+)RGD
Sequence:
RefSeq Acc Id: XM_006254633   ⟹   XP_006254695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,516,931 - 30,567,199 (+)NCBI
mRatBN7.21830,265,808 - 30,316,068 (+)NCBI
Rnor_6.01831,574,759 - 31,625,286 (+)NCBI
Rnor_5.01831,252,665 - 31,303,463 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001013077   ⟸   NM_001013059
- UniProtKB: Q5U2S1 (UniProtKB/Swiss-Prot),   A6J3G8 (UniProtKB/TrEMBL),   A0A8I5ZKG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254695   ⟸   XM_006254633
- Peptide Label: isoform X1
- UniProtKB: Q5U2S1 (UniProtKB/Swiss-Prot),   A6J3G8 (UniProtKB/TrEMBL),   A0A8I5ZKG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000018499   ⟸   ENSRNOT00000018499
RefSeq Acc Id: ENSRNOP00000087620   ⟸   ENSRNOT00000097966
RefSeq Acc Id: ENSRNOP00000093040   ⟸   ENSRNOT00000104237
RefSeq Acc Id: ENSRNOP00000078162   ⟸   ENSRNOT00000096236
RefSeq Acc Id: ENSRNOP00000095556   ⟸   ENSRNOT00000107021

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2S1-F1-model_v2 AlphaFold Q5U2S1 1-221 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700740
Promoter ID:EPDNEW_R11264
Type:initiation region
Name:Ndfip1_1
Description:Nedd4 family interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01831,574,809 - 31,574,869EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310053 AgrOrtholog
BioCyc Gene G2FUF-7771 BioCyc
Ensembl Genes ENSRNOG00000013562 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055018185 UniProtKB/Swiss-Prot
  ENSRNOG00060020948 UniProtKB/Swiss-Prot
  ENSRNOG00065013253 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000018499.6 UniProtKB/Swiss-Prot
  ENSRNOT00000096236 ENTREZGENE
  ENSRNOT00000096236.1 UniProtKB/TrEMBL
  ENSRNOT00000097966.1 UniProtKB/TrEMBL
  ENSRNOT00000104237.1 UniProtKB/TrEMBL
  ENSRNOT00000107021.1 UniProtKB/TrEMBL
  ENSRNOT00055030842 UniProtKB/Swiss-Prot
  ENSRNOT00060036367 UniProtKB/Swiss-Prot
  ENSRNOT00065021790 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7192378 IMAGE-MGC_LOAD
InterPro NEDD4/Bsd2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:291609 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94675 IMAGE-MGC_LOAD
NCBI Gene 291609 ENTREZGENE
PANTHER NEDD4 FAMILY-INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13396 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF2370 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ndfip1 PhenoGen
RatGTEx ENSRNOG00000013562 RatGTEx
  ENSRNOG00055018185 RatGTEx
  ENSRNOG00060020948 RatGTEx
  ENSRNOG00065013253 RatGTEx
UniProt A0A8I5ZKG6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A943_RAT UniProtKB/TrEMBL
  A0A8I6AJ70_RAT UniProtKB/TrEMBL
  A0A8I6ANN8_RAT UniProtKB/TrEMBL
  A6J3G8 ENTREZGENE, UniProtKB/TrEMBL
  A6J3H0_RAT UniProtKB/TrEMBL
  NFIP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ndfip1  Nedd4 family interacting protein 1  Ndfip1_predicted  Nedd4 family interacting protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ndfip1_predicted  Nedd4 family interacting protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED