Ndfip1 (Nedd4 family interacting protein 1)

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Gene: Ndfip1 (Nedd4 family interacting protein 1) Rattus norvegicus

Analyze

Symbol:

Ndfip1

Name:

Nedd4 family interacting protein 1

RGD ID:

1310053

Description:

Predicted to enable WW domain binding activity. Predicted to be involved in several processes, including positive regulation of canonical NF-kappaB signal transduction; positive regulation of protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within several processes, including negative regulation of interleukin-4 production; negative regulation of type 2 immune response; and regulation of lymphocyte activation. Predicted to be located in cell cortex. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Orthologous to human NDFIP1 (Nedd4 family interacting protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; benzo[a]pyrene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC291609; NEDD4 family-interacting protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NDFIP1 (Nedd4 family interacting protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ndfip1 (Nedd4 family interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ndfip1 (Nedd4 family interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NDFIP1 (Nedd4 family interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NDFIP1 (Nedd4 family interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ndfip1 (Nedd4 family interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NDFIP1 (Nedd4 family interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NDFIP1 (Nedd4 family interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ndfip1 (Nedd4 family interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	C3orf49 (chromosome 3 open reading frame 49)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	NDFIP1 (Nedd4 family interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ndfip1 (Nedd4 family interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ndfip1l (Nedd4 family interacting protein 1, like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ndfip1 (Nedd4 family interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	BSD2	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	Ndfip	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ndfip1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	30,265,808 - 30,316,068 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	30,250,613 - 30,322,311 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	30,370,117 - 30,420,290 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	31,133,009 - 31,183,042 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	30,468,294 - 30,518,347 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	31,574,759 - 31,625,286 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	31,574,821 - 31,625,274 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	31,252,665 - 31,303,463 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	31,351,538 - 31,401,736 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	31,378,183 - 31,428,381 (+)	NCBI
Celera	18	29,904,818 - 29,954,984 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Stroke (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-trichloroethane (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buspirone (EXP)

carbamazepine (ISO)

chlorpyrifos (ISO)

clobetasol (ISO)

clofibrate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

dexamethasone (ISO)

diethylstilbestrol (ISO)

dorsomorphin (ISO)

Enterolactone (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glafenine (EXP)

indometacin (ISO)

levonorgestrel (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

N-methyl-4-phenylpyridinium (ISO)

paracetamol (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

testosterone undecanoate (ISO)

tetrachloromethane (ISO)

trichloroethene (EXP)

uranium atom (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CD4-positive, alpha-beta T cell proliferation (IEA,ISO)

intracellular iron ion homeostasis (IEA,ISO)

metal ion transport (IBA,IEA)

negative regulation of CD4-positive, alpha-beta T cell proliferation (IEA,ISO)

negative regulation of gene expression (ISO)

negative regulation of inflammatory response (IEA,ISO)

negative regulation of interleukin-4 production (IEA,ISO)

negative regulation of isotype switching to IgE isotypes (IEA,ISO)

negative regulation of protein transport (IEA,ISO)

negative regulation of type 2 immune response (IEA,ISO)

positive regulation of canonical NF-kappaB signal transduction (ISO)

positive regulation of protein catabolic process (IEA,ISO)

positive regulation of protein ubiquitination (IBA,IEA,ISO,ISS)

protein catabolic process (IEA,ISO)

regulation of isotype switching to IgG isotypes (IEA,ISO)

regulation of lymphocyte differentiation (IEA,ISO)

regulation of myeloid leukocyte differentiation (IEA,ISO)

ubiquitin-dependent protein catabolic process (IBA)

vacuolar transport (IEA)

Cellular Component

cell cortex (IEA,ISO)

dendrite (IEA)

endoplasmic reticulum (IBA)

endosome membrane (IEA)

extracellular region (IEA)

Golgi apparatus (IBA,IEA,ISO)

Golgi membrane (IEA)

perinuclear region of cytoplasm (IBA,IEA,ISO)

synapse (IEA)

Molecular Function

protein binding (IPI,ISO)

WW domain binding (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Differential regulation of Nedd4 ubiquitin ligases and their adaptor protein Ndfip1 in a rat model of ischemic stroke.	Lackovic J, etal., Exp Neurol. 2012 May;235(1):326-35. Epub 2012 Mar 5.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:11748237	PMID:12761501	PMID:15489334	PMID:17137798	PMID:18776082	PMID:22871113	PMID:25631046

Genomics

Comparative Map Data

Ndfip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	30,265,808 - 30,316,068 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	30,250,613 - 30,322,311 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	30,370,117 - 30,420,290 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	31,133,009 - 31,183,042 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	30,468,294 - 30,518,347 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	31,574,759 - 31,625,286 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	31,574,821 - 31,625,274 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	31,252,665 - 31,303,463 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	31,351,538 - 31,401,736 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	31,378,183 - 31,428,381 (+)	NCBI
Celera	18	29,904,818 - 29,954,984 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

NDFIP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	142,108,779 - 142,154,440 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	142,108,779 - 142,154,440 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	141,488,344 - 141,534,005 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	141,468,508 - 141,513,128 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	141,468,507 - 141,513,128	NCBI
Celera	5	137,569,742 - 137,615,392 (+)	NCBI		Celera
Cytogenetic Map	5	q31.3	NCBI
HuRef	5	136,635,249 - 136,680,894 (+)	NCBI		HuRef
CHM1_1	5	140,922,028 - 140,967,670 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	142,639,297 - 142,684,953 (+)	NCBI		T2T-CHM13v2.0

Ndfip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	38,551,960 - 38,598,250 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	38,543,449 - 38,598,356 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	38,418,907 - 38,465,197 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	38,410,396 - 38,465,303 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	38,578,629 - 38,624,060 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	38,536,434 - 38,586,631 (+)	NCBI		MGSCv36	mm8
Celera	18	39,761,460 - 39,806,803 (+)	NCBI		Celera
Cytogenetic Map	18	B3	NCBI
cM Map	18	20.32	NCBI

Ndfip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	11,643,846 - 11,666,131 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	11,643,846 - 11,666,131 (-)	NCBI	ChiLan1.0	ChiLan1.0

NDFIP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	5	135,494,488 - 135,538,959 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	137,467,161 - 137,511,569 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	143,596,345 - 143,622,913 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	143,600,789 - 143,622,913 (+)	Ensembl	panpan1.1		panPan2

NDFIP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	36,978,148 - 37,065,247 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	36,961,024 - 37,064,303 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	34,065,772 - 34,117,671 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	37,468,313 - 37,520,209 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	37,467,811 - 37,521,377 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	34,543,424 - 34,595,458 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	35,354,316 - 35,406,223 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	36,162,143 - 36,214,039 (+)	NCBI		UU_Cfam_GSD_1.0

Ndfip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	150,479,497 - 150,529,371 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936504	12,053,470 - 12,103,346 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NDFIP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	143,629,783 - 143,734,520 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	143,688,946 - 143,734,523 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	149,890,960 - 149,924,216 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NDFIP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	44,737,432 - 44,783,409 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	44,737,422 - 44,775,657 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	33,067,657 - 33,113,926 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ndfip1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	1,303,773 - 1,353,253 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624774	1,245,587 - 1,353,253 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ndfip1
168 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	404
Count of miRNA genes:	228
Interacting mature miRNAs:	281
Transcripts:	ENSRNOT00000018499
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	18007599	63571040	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	18234564	31359530	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	18234564	31359530	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19278901	83218561	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	21372893	83213037	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	22066242	52293055	Rat
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	24796977	79788953	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25570985	70570985	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26548082	46969551	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26548082	46969551	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26548082	46969551	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26548082	46969551	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26548082	46969551	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26548082	46969551	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26548082	46969551	Rat
2293704	Bss35	Bone structure and strength QTL 35	4.59	0.0002	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	18	28964853	73964853	Rat
2300157	Bmd66	Bone mineral density QTL 66	13.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	18	28964853	73964853	Rat
2300177	Bmd65	Bone mineral density QTL 65	19.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	18	28964853	73964853	Rat
9589816	Gluco68	Glucose level QTL 68	7.25	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	29792965	74792965	Rat
8694378	Bw157	Body weight QTL 157	3.59	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	29792965	74792965	Rat
9590318	Scort22	Serum corticosterone level QTL 22	7.64	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	29792965	74792965	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	29792965	74792965	Rat
738005	Anxrr11	Anxiety related response QTL 11	3.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	18	30039813	75039813	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC085887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000018499 ⟹ ENSRNOP00000018499

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,265,869 - 30,322,311 (+)	Ensembl
Rnor_6.0 Ensembl	18	31,574,821 - 31,625,274 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096236 ⟹ ENSRNOP00000078162

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,291,465 - 30,322,307 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097966 ⟹ ENSRNOP00000087620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,290,743 - 30,322,307 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104237 ⟹ ENSRNOP00000093040

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,250,613 - 30,322,307 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000107021 ⟹ ENSRNOP00000095556

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,265,864 - 30,316,027 (+)	Ensembl

RefSeq Acc Id:

NM_001013059 ⟹ NP_001013077

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,265,873 - 30,316,057 (+)	NCBI
Rnor_6.0	18	31,574,821 - 31,625,275 (+)	NCBI
Rnor_5.0	18	31,252,665 - 31,303,463 (+)	NCBI
RGSC_v3.4	18	31,351,538 - 31,401,736 (+)	RGD
Celera	18	29,904,818 - 29,954,984 (+)	RGD

Sequence:

show sequence

GAGCGTCCCTGCGTCGGCAGCGGCCATCCACACGCCGCGGCGCGTACCTCTCGGCCTCCCGGCG
ACCCCCAGCCGCGGCACCCGCGCTCGTTCAGCTCTCTCGCTCGCCCTCCTTCCCTGAGGCCTGC
TGCGCCATGGCTTTGGCGTTGGCGGCGCTGGCGGCGGTGGAGCCGGCCTGCGGCACTGGGTACC
AGCAGTTGCAGAATGAAGAGGAGCCTGGGGAGCGGGAACAGACTGCGGGTGACGCCCCTCCACC
CTACAGCAGCATCTCTGCGGAGAGTGCAGCATATTTTGACTACAAAGATGAATCTGGGTTTCCA
AAGCCCCCATCTTATAATGTGGCTACAACACTGCCCAGCTATGACGAGGCTGAGAGAACCAAGG
CTGAAGCCACCATCCCTTTGGTTCCTGGAAGAGATGAAGATTTTGTGGGTCGGGATGATTTTGA
TGATGCTGACCAGCTGAGGATAGGAAACGATGGGATTTTTATGTTAACCTTTTTCATGGCATTC
CTCTTCAACTGGATTGGGTTTTTCTTGTCTTTTTGCCTGACCACCTCAGCTGCGGGAAGGTATG
GGGCCATCTCAGGATTTGGTCTTTCTCTAATTAAGTGGATCCTTATTGTCAGGTTTTCCACCTA
TTTCCCTGGATACTTTGATGGCCAGTACTGGCTCTGGTGGGTGTTCTTGGTTTTAGGCTTTCTC
CTGTTTCTCAGAGGATTTATCAATTATGCAAAAGTTCGGAAGATGCCAGAAACTTTCTCAAATC
TCCCCAGGACCAGAGTTCTCTTTATTTATTAAAGATGTCTTCTGGCAAAGCTTCCTGCACTGAT
GAAGTCCCTCGAGAAGCGAGAGCACCTGCAGGAAGTGAATCACCACCAGGATGGAGGAACAGTC
ACCTGCTTTAAAAAATAAAGTACTGTTGAAAAAGATCATTTCTCTCTATTTGTTCCTAGGTGTA
AAATGTTAATAGTTAATGCAGAATTCTGTAATCATCGAATCATTAGTGGTTAATGTTTGTAAAA
GCTCTTGCAATCAAGTCTGTGATGTATTATTAATAATGCCTTATATATTGTTTGTAGTCATTTT
AAATAGCATGAGCCATGTCCCTATAGTCAGTAGGGGGCAATCTTGCTTTATTCATCCTCCATCT
CAAAGCAGATTTGAAATTACAGATTAGTGTAAGCTATGGATAAGGCTGGCTGTTTGAAAAGGGG
TTTTCTCAAAAGTCAAAACTTTGGTTATGACTGCATTTCTGCACATAATCCATATTTCCTGTTC
AAATTAATCTAGAAATGCGTTTAATTGTACTGTGTGTGAACATCTGGAAGCAAAACCATAGTGC
AAAGTTCACTGTAATGTTAACAAAAAATGTCCTCAATTGGTAAATAAGCATTACTTTTTCATAG
TCTATATTCAGAAATTACCTTTTCATTCCGTAGTTCTGTGTAGTTCATATAAAATGGAAAGGGC
AAAGATAGATTCAGATTAAATATTAAATATTCTTCTGCAAACTGGATAGAATCTCAGAGGGTCA
GGAGCAAAGAGTTAGTTTGGAACTTTTGAGAGGATCCCTAACATTCTGTACTCCTTGCTTTTAC
AACTGTTGTAACTGTAGAATGATGTGCTTGCTGCCCAAGTGCTAGTTCACTTTGGTTGGTATAT
TAAACTGTAAATACAATAGAACATTAATAAATGTCTCTTGTGTAGCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006254633 ⟹ XP_006254695

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,265,808 - 30,316,068 (+)	NCBI
Rnor_6.0	18	31,574,759 - 31,625,286 (+)	NCBI
Rnor_5.0	18	31,252,665 - 31,303,463 (+)	NCBI

Sequence:

show sequence

GTCCCCGCCTCCTACCCAGGGGCCGCGGCGGAGCCTTGGCGGCGGCGCTCAGTGCCTGCGGAGA
GCGTCCCTGCGTCGGCAGCGGCCATCCACACGCCGCGGCGCGTACCTCTCGGCCTCCCGGCGAC
CCCCAGCCGCGGCACCCGCGCTCGTTCAGCTCTCTCGCTCGCCCTCCTTCCCTGAGGCCTGCTG
CGCCATGGCTTTGGCGTTGGCGGCGCTGGCGGCGGTGGAGCCGGCCTGCGGCACTGGGTACCAG
CAGTTGCAGAATGAAGAGGAGCCTGGGGAGCGGGAACAGACTGCGGGTGACGCCCCTCCACCCT
ACAGCAGCATCTCTGCGGAGAGTGCAGCATATTTTGACTACAAAGATGAATCTGGGTTTCCAAA
GCCCCCATCTTATAATGTGGCTACAACACTGCCCAGCTATGACGAGGCTGAGAGAACCAAGGCT
GAAGCCACCATCCCTTTGGTTCCTGGAAGAGATGAAGATTTTGTGGGTCGGGATGATTTTGATG
ATGCTGACCAGCTGAGGATAGGAAACGATGGGATTTTTATGTTAACCTTTTTCATGGCATTCCT
CTTCAACTGGATTGGGTTTTTCTTGTCTTTTTGCCTGACCACCTCAGCTGCGGGAAGGTATGGG
GCCATCTCAGGATTTGGTCTTTCTCTAATTAAGTGGATCCTTATTGTCAGGTTTTCCACCTATT
TCCCTGGATACTTTGATGGCCAGTACTGGCTCTGGTGGGTGTTCTTGGTTTTAGGCTTTCTCCT
GTTTCTCAGAGGATTTATCAATTATGCAAAAGTTCGGAAGATGCCAGAAACTTTCTCAAATCTC
CCCAGGACCAGAGTTCTCTTTATTTATTAAAGGCTGCCTAGAGCTTGACTGTTCAGTGTCCTTC
TCTGGCAGATGTCTTCTGGCAAAGCTTCCTGCACTGATGAAGTCCCTCGAGAAGCGAGAGCACC
TGCAGGAAGTGAATCACCACCAGGATGGAGGAACAGTCACCTGCTTTAAAAAATAAAGTACTGT
TGAAAAAGATCATTTCTCTCTATTTGTTCCTAGGTGTAAAATGTTAATAGTTAATGCAGAATTC
TGTAATCATCGAATCATTAGTGGTTAATGTTTGTAAAAGCTCTTGCAATCAAGTCTGTGATGTA
TTATTAATAATGCCTTATATATTGTTTGTAGTCATTTTAAATAGCATGAGCCATGTCCCTATAG
TCAGTAGGGGGCAATCTTGCTTTATTCATCCTCCATCTCAAAGCAGATTTGAAATTACAGATTA
GTGTAAGCTATGGATAAGGCTGGCTGTTTGAAAAGGGGTTTTCTCAAAAGTCAAAACTTTGGTT
ATGACTGCATTTCTGCACATAATCCATATTTCCTGTTCAAATTAATCTAGAAATGCGTTTAATT
GTACTGTGTGTGAACATCTGGAAGCAAAACCATAGTGCAAAGTTCACTGTAATGTTAACAAAAA
ATGTCCTCAATTGGTAAATAAGCATTACTTTTTCATAGTCTATATTCAGAAATTACCTTTTCAT
TCCGTAGTTCTGTGTAGTTCATATAAAATGGAAAGGGCAAAGATAGATTCAGATTAAATATTAA
ATATTCTTCTGCAAACTGGATAGAATCTCAGAGGGTCAGGAGCAAAGAGTTAGTTTGGAACTTT
TGAGAGGATCCCTAACATTCTGTACTCCTTGCTTTTACAACTGTTGTAACTGTAGAATGATGTG
CTTGCTGCCCAAGTGCTAGTTCACTTTGGTTGGTATATTAAACTGTAAATACAATAGAACATTA
ATAAATGTCTCTTGTGTAGCACCTTTCCTGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001013077	(Get FASTA)	NCBI Sequence Viewer
	XP_006254695	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85887	(Get FASTA)	NCBI Sequence Viewer
	EDL76450	(Get FASTA)	NCBI Sequence Viewer
	EDL76451	(Get FASTA)	NCBI Sequence Viewer
	EDL76452	(Get FASTA)	NCBI Sequence Viewer
	Q5U2S1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013077 ⟸ NM_001013059

- UniProtKB:

Q5U2S1 (UniProtKB/Swiss-Prot), A6J3G8 (UniProtKB/TrEMBL), A0A8I5ZKG6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALALAALAAVEPACGTGYQQLQNEEEPGEREQTAGDAPPPYSSISAESAAYFDYKDESGFPKP
PSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFMLTFFMAFLF
NWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLF
LRGFINYAKVRKMPETFSNLPRTRVLFIY

hide sequence

RefSeq Acc Id:	XP_006254695 ⟸ XM_006254633
- Peptide Label:	isoform X1
- UniProtKB:	Q5U2S1 (UniProtKB/Swiss-Prot), A6J3G8 (UniProtKB/TrEMBL), A0A8I5ZKG6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALALAALAAVEPACGTGYQQLQNEEEPGEREQTAGDAPPPYSSISAESAAYFDYKDESGFPKP PSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFMLTFFMAFLF NWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLF LRGFINYAKVRKMPETFSNLPRTRVLFIY hide sequence

RefSeq Acc Id:

ENSRNOP00000018499 ⟸ ENSRNOT00000018499

RefSeq Acc Id:

ENSRNOP00000087620 ⟸ ENSRNOT00000097966

RefSeq Acc Id:

ENSRNOP00000093040 ⟸ ENSRNOT00000104237

RefSeq Acc Id:

ENSRNOP00000078162 ⟸ ENSRNOT00000096236

RefSeq Acc Id:

ENSRNOP00000095556 ⟸ ENSRNOT00000107021

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U2S1-F1-model_v2	AlphaFold	Q5U2S1	1-221	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310053	AgrOrtholog
BioCyc Gene	G2FUF-7771	BioCyc
Ensembl Genes	ENSRNOG00000013562	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000018499	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000078162	ENTREZGENE
	ENSRNOP00000078162.1	UniProtKB/TrEMBL
	ENSRNOP00000087620.1	UniProtKB/TrEMBL
	ENSRNOP00000093040.1	UniProtKB/TrEMBL
	ENSRNOP00000095556.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018499	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000096236	ENTREZGENE
	ENSRNOT00000096236.1	UniProtKB/TrEMBL
	ENSRNOT00000097966.1	UniProtKB/TrEMBL
	ENSRNOT00000104237.1	UniProtKB/TrEMBL
	ENSRNOT00000107021.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7192378	IMAGE-MGC_LOAD
InterPro	NEDD4/Bsd2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:291609	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94675	IMAGE-MGC_LOAD
NCBI Gene	291609	ENTREZGENE
PANTHER	NEDD4 FAMILY-INTERACTING PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR13396	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	DUF2370	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ndfip1	PhenoGen
UniProt	A0A8I5ZKG6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A943_RAT	UniProtKB/TrEMBL
	A0A8I6AJ70_RAT	UniProtKB/TrEMBL
	A0A8I6ANN8_RAT	UniProtKB/TrEMBL
	A6J3G8	ENTREZGENE, UniProtKB/TrEMBL
	A6J3H0_RAT	UniProtKB/TrEMBL
	NFIP1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Ndfip1	Nedd4 family interacting protein 1	Ndfip1_predicted	Nedd4 family interacting protein 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Ndfip1_predicted	Nedd4 family interacting protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar