Ppfibp1 (PPFIA binding protein 1) - Rat Genome Database

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Gene: Ppfibp1 (PPFIA binding protein 1) Rattus norvegicus
Analyze
Symbol: Ppfibp1
Name: PPFIA binding protein 1
RGD ID: 1310010
Description: Predicted to be involved in cortical microtubule organization and neuromuscular junction development. Predicted to be located in cell cortex and plasma membrane. Predicted to be active in presynaptic active zone. Orthologous to human PPFIBP1 (PPFIA binding protein 1); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: liprin-beta-1; LOC312855; PTPRF interacting protein, binding protein 1; PTPRF interacting protein, binding protein 1 (liprin beta 1)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84181,538,249 - 181,682,079 (+)NCBIGRCr8
mRatBN7.24179,807,579 - 179,951,428 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4179,808,794 - 179,951,428 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4186,093,061 - 186,235,824 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04181,877,553 - 182,020,331 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04180,498,003 - 180,640,776 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04181,285,179 - 181,428,157 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,286,455 - 181,428,157 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04245,435,387 - 245,578,035 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44184,521,107 - 184,635,773 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14184,747,916 - 184,879,253 (+)NCBI
Celera4168,331,211 - 168,444,939 (+)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloroacetic acid  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
finasteride  (EXP)
FR900359  (ISO)
genistein  (ISO)
hydrogen peroxide  (ISO)
ifosfamide  (ISO)
indometacin  (ISO)
inulin  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
metformin  (EXP)
methapyrilene  (EXP)
methotrexate  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
nickel atom  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
rac-lactic acid  (ISO)
rimonabant  (ISO)
selenium atom  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thimerosal  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21423176   PMID:25468996  


Genomics

Comparative Map Data
Ppfibp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84181,538,249 - 181,682,079 (+)NCBIGRCr8
mRatBN7.24179,807,579 - 179,951,428 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4179,808,794 - 179,951,428 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4186,093,061 - 186,235,824 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04181,877,553 - 182,020,331 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04180,498,003 - 180,640,776 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04181,285,179 - 181,428,157 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,286,455 - 181,428,157 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04245,435,387 - 245,578,035 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44184,521,107 - 184,635,773 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14184,747,916 - 184,879,253 (+)NCBI
Celera4168,331,211 - 168,444,939 (+)NCBICelera
Cytogenetic Map4q44NCBI
PPFIBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381227,524,206 - 27,695,564 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1227,523,431 - 27,695,564 (+)EnsemblGRCh38hg38GRCh38
GRCh371227,677,139 - 27,848,497 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,568,312 - 27,739,763 (+)NCBINCBI36Build 36hg18NCBI36
Build 341227,568,311 - 27,692,165NCBI
Celera1232,822,643 - 32,994,086 (+)NCBICelera
Cytogenetic Map12p11.23-p11.22NCBI
HuRef1227,445,920 - 27,617,349 (+)NCBIHuRef
CHM1_11227,642,077 - 27,813,482 (+)NCBICHM1_1
T2T-CHM13v2.01227,395,877 - 27,567,299 (+)NCBIT2T-CHM13v2.0
Ppfibp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396146,788,107 - 146,933,523 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6146,789,985 - 146,933,523 (+)EnsemblGRCm39 Ensembl
GRCm386146,886,609 - 147,032,025 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6146,888,487 - 147,032,025 (+)EnsemblGRCm38mm10GRCm38
MGSCv376146,837,016 - 146,980,545 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366146,845,684 - 146,989,193 (+)NCBIMGSCv36mm8
Celera6149,971,063 - 150,067,697 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.7NCBI
Ppfibp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555057,193,476 - 7,299,621 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555057,191,751 - 7,394,506 (-)NCBIChiLan1.0ChiLan1.0
PPFIBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21069,118,465 - 69,290,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11269,114,862 - 69,286,156 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01258,616,002 - 58,787,280 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11261,234,873 - 61,406,076 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1261,234,873 - 61,296,894 (-)Ensemblpanpan1.1panPan2
PPFIBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12720,030,927 - 20,198,006 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2720,032,643 - 20,123,563 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2726,311,035 - 26,367,646 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02720,224,797 - 20,391,943 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2720,224,794 - 20,391,976 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12720,033,148 - 20,089,732 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02720,059,842 - 20,116,926 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02726,467,995 - 26,524,612 (+)NCBIUU_Cfam_GSD_1.0
Ppfibp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494581,992,350 - 82,170,672 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493739528,813 - 79,109 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPFIBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl546,031,401 - 46,222,887 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1546,031,398 - 46,222,915 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2549,600,968 - 49,650,226 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPFIBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11127,241,332 - 27,417,421 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1127,298,975 - 27,414,756 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660697,634,241 - 7,810,795 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppfibp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624935392,351 - 523,832 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624935392,353 - 594,642 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ppfibp1
775 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:117
Interacting mature miRNAs:129
Transcripts:ENSRNOT00000044147
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat

Markers in Region
D4Got141  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24179,871,788 - 179,871,900 (+)MAPPERmRatBN7.2
Rnor_6.04181,348,613 - 181,348,724NCBIRnor6.0
Rnor_5.04245,498,821 - 245,498,932UniSTSRnor5.0
RGSC_v3.44184,556,003 - 184,556,115RGDRGSC3.4
RGSC_v3.44184,556,004 - 184,556,115UniSTSRGSC3.4
RGSC_v3.14184,801,128 - 184,801,239RGD
Celera4168,365,123 - 168,365,234UniSTS
RH 3.4 Map41083.9RGD
RH 3.4 Map41083.9UniSTS
Cytogenetic Map4q44UniSTS
RH130104  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24179,951,054 - 179,951,248 (+)MAPPERmRatBN7.2
Rnor_6.04181,427,784 - 181,427,977NCBIRnor6.0
Rnor_5.04245,577,662 - 245,577,855UniSTSRnor5.0
RGSC_v3.44184,635,400 - 184,635,593UniSTSRGSC3.4
Celera4168,444,566 - 168,444,759UniSTS
RH 3.4 Map41088.8UniSTS
Cytogenetic Map4q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001395638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000044147   ⟹   ENSRNOP00000039655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4179,808,794 - 179,949,538 (+)Ensembl
Rnor_6.0 Ensembl4181,315,444 - 181,428,157 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083633   ⟹   ENSRNOP00000074098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4179,808,847 - 179,951,428 (+)Ensembl
Rnor_6.0 Ensembl4181,286,455 - 181,428,152 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094198   ⟹   ENSRNOP00000093133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4179,808,800 - 179,951,401 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098646   ⟹   ENSRNOP00000096890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4179,808,800 - 179,951,401 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115987   ⟹   ENSRNOP00000097266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4179,808,847 - 179,950,245 (+)Ensembl
RefSeq Acc Id: NM_001395638   ⟹   NP_001382567
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,539,466 - 181,682,079 (+)NCBI
mRatBN7.24179,808,796 - 179,951,426 (+)NCBI
RefSeq Acc Id: XM_008763382   ⟹   XP_008761604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
mRatBN7.24179,855,708 - 179,951,428 (+)NCBI
Rnor_6.04181,285,179 - 181,428,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107707   ⟹   XP_038963635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
mRatBN7.24179,807,579 - 179,951,428 (+)NCBI
RefSeq Acc Id: XM_039107710   ⟹   XP_038963638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
mRatBN7.24179,807,579 - 179,951,428 (+)NCBI
RefSeq Acc Id: XM_039107711   ⟹   XP_038963639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
mRatBN7.24179,807,579 - 179,951,428 (+)NCBI
RefSeq Acc Id: XM_039107712   ⟹   XP_038963640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
mRatBN7.24179,807,579 - 179,951,428 (+)NCBI
RefSeq Acc Id: XM_039107713   ⟹   XP_038963641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
mRatBN7.24179,807,579 - 179,951,428 (+)NCBI
RefSeq Acc Id: XM_039107714   ⟹   XP_038963642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
mRatBN7.24179,807,579 - 179,951,428 (+)NCBI
RefSeq Acc Id: XM_039107715   ⟹   XP_038963643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
mRatBN7.24179,807,579 - 179,951,428 (+)NCBI
RefSeq Acc Id: XM_039107716   ⟹   XP_038963644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
mRatBN7.24179,807,579 - 179,951,428 (+)NCBI
RefSeq Acc Id: XM_039107717   ⟹   XP_038963645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
mRatBN7.24179,807,579 - 179,951,428 (+)NCBI
RefSeq Acc Id: XM_039107718   ⟹   XP_038963646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
mRatBN7.24179,807,579 - 179,951,428 (+)NCBI
RefSeq Acc Id: XM_039107719   ⟹   XP_038963647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
mRatBN7.24179,807,579 - 179,951,428 (+)NCBI
RefSeq Acc Id: XM_063286176   ⟹   XP_063142246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
RefSeq Acc Id: XM_063286177   ⟹   XP_063142247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
RefSeq Acc Id: XM_063286178   ⟹   XP_063142248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
RefSeq Acc Id: XM_063286179   ⟹   XP_063142249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
RefSeq Acc Id: XM_063286180   ⟹   XP_063142250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
RefSeq Acc Id: XM_063286181   ⟹   XP_063142251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
RefSeq Acc Id: XM_063286182   ⟹   XP_063142252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
RefSeq Acc Id: XM_063286183   ⟹   XP_063142253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
RefSeq Acc Id: XM_063286184   ⟹   XP_063142254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
RefSeq Acc Id: XM_063286186   ⟹   XP_063142256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
RefSeq Acc Id: XM_063286187   ⟹   XP_063142257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
RefSeq Acc Id: XM_063286188   ⟹   XP_063142258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
RefSeq Acc Id: XM_063286189   ⟹   XP_063142259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84181,538,249 - 181,682,076 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001382567 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761604 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963635 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963638 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963639 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963640 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963641 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963642 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963643 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963644 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963645 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963646 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963647 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142246 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142247 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142248 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142249 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142250 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142251 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142252 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142253 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142254 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142256 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142257 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142258 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142259 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM01402 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000039655.4
  ENSRNOP00000074098.2
  ENSRNOP00000093133.1
  ENSRNOP00000096890.1
  ENSRNOP00000097266.1
RefSeq Acc Id: XP_008761604   ⟸   XM_008763382
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K781 (UniProtKB/TrEMBL),   A0A8I6ANB2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039655   ⟸   ENSRNOT00000044147
Ensembl Acc Id: ENSRNOP00000074098   ⟸   ENSRNOT00000083633
RefSeq Acc Id: XP_038963635   ⟸   XM_039107707
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ANB2 (UniProtKB/TrEMBL),   A0A0G2K781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963639   ⟸   XM_039107711
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963638   ⟸   XM_039107710
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963641   ⟸   XM_039107713
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ATF2 (UniProtKB/TrEMBL),   A0A0G2K781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963640   ⟸   XM_039107712
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963647   ⟸   XM_039107719
- Peptide Label: isoform X17
- UniProtKB: A0A0G2K781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963642   ⟸   XM_039107714
- Peptide Label: isoform X8
- UniProtKB: A0A0G2K781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963644   ⟸   XM_039107716
- Peptide Label: isoform X13
- UniProtKB: A0A8I6AGP2 (UniProtKB/TrEMBL),   A0A0G2K781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963643   ⟸   XM_039107715
- Peptide Label: isoform X12
- UniProtKB: A0A0G2K781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963645   ⟸   XM_039107717
- Peptide Label: isoform X15
- UniProtKB: A0A0G2K781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963646   ⟸   XM_039107718
- Peptide Label: isoform X16
- UniProtKB: A6IN37 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097266   ⟸   ENSRNOT00000115987
Ensembl Acc Id: ENSRNOP00000093133   ⟸   ENSRNOT00000094198
Ensembl Acc Id: ENSRNOP00000096890   ⟸   ENSRNOT00000098646
RefSeq Acc Id: NP_001382567   ⟸   NM_001395638
- UniProtKB: A0A0G2K781 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142247   ⟸   XM_063286177
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ATF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142251   ⟸   XM_063286181
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063142249   ⟸   XM_063286179
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063142253   ⟸   XM_063286183
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063142256   ⟸   XM_063286186
- Peptide Label: isoform X13
- UniProtKB: A0A8I6AGP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142258   ⟸   XM_063286188
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063142259   ⟸   XM_063286189
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063142248   ⟸   XM_063286178
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063142250   ⟸   XM_063286180
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063142254   ⟸   XM_063286184
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063142252   ⟸   XM_063286182
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063142257   ⟸   XM_063286187
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063142246   ⟸   XM_063286176
- Peptide Label: isoform X2
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K781-F1-model_v2 AlphaFold A0A0G2K781 1-1032 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693518
Promoter ID:EPDNEW_R4031
Type:initiation region
Name:Ppfibp1_1
Description:PPFIA binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04181,286,411 - 181,286,471EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310010 AgrOrtholog
BioCyc Gene G2FUF-42422 BioCyc
Ensembl Genes ENSRNOG00000031709 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044147.4 UniProtKB/TrEMBL
  ENSRNOT00000083633.2 UniProtKB/TrEMBL
  ENSRNOT00000094198.1 UniProtKB/TrEMBL
  ENSRNOT00000098646.1 UniProtKB/TrEMBL
  ENSRNOT00000115987.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  1.10.287.1490 UniProtKB/TrEMBL
InterPro Liprin UniProtKB/TrEMBL
  Liprin-beta_SAM_rpt_1 UniProtKB/TrEMBL
  Liprin-beta_SAM_rpt_2 UniProtKB/TrEMBL
  Liprin-beta_SAM_rpt_3 UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
NCBI Gene 312855 ENTREZGENE
PANTHER PTHR12587 UniProtKB/TrEMBL
  PTHR12587:SF16 UniProtKB/TrEMBL
Pfam SAM_1 UniProtKB/TrEMBL
  SAM_2 UniProtKB/TrEMBL
PhenoGen Ppfibp1 PhenoGen
PROSITE SAM_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031709 RatGTEx
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP MPN010-like UniProtKB/TrEMBL
  SAM_homology UniProtKB/TrEMBL
UniProt A0A0G2K781 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ANB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATF2 ENTREZGENE, UniProtKB/TrEMBL
  A6IN37 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJW3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Ppfibp1  PPFIA binding protein 1  Ppfibp1  PTPRF interacting protein, binding protein 1 (liprin beta 1)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ppfibp1  PTPRF interacting protein, binding protein 1 (liprin beta 1)   Ppfibp1_predicted  PTPRF interacting protein, binding protein 1 (liprin beta 1) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ppfibp1_predicted  PTPRF interacting protein, binding protein 1 (liprin beta 1) (predicted)      Symbol and Name status set to approved 70820 APPROVED