Hnrnpc (heterogeneous nuclear ribonucleoprotein C) - Rat Genome Database

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Gene: Hnrnpc (heterogeneous nuclear ribonucleoprotein C) Rattus norvegicus
Analyze
Symbol: Hnrnpc (Ensembl: LOC100911576)
Name: heterogeneous nuclear ribonucleoprotein C (Ensembl:heterogeneous nuclear ribonucleoproteins C1/C2-like)
RGD ID: 1309982
Description: Enables several functions, including deaminase binding activity; enzyme inhibitor activity; and ribonucleoprotein complex binding activity. Involved in negative regulation of mRNA modification. Located in nucleoplasmic periphery of the nuclear pore complex. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder. Orthologous to several human genes including HNRNPC (heterogeneous nuclear ribonucleoprotein C); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,4-dibromophenyl 2,4,5-tribromophenyl ether; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: heterogeneous nuclear ribonucleoprotein C (C1/C2); heterogeneous nuclear ribonucleoproteins C1/C2; hnRNP C; hnRNP C protein C-terminal fragment (158 AA); hnRNP core protein C; Hnrpc; LOC290046; MGC114359
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Hnrnpc-ps4  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81527,253,098 - 27,282,779 (-)NCBIGRCr8
mRatBN7.21524,779,593 - 24,809,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,779,450 - 24,809,183 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1527,550,657 - 27,580,436 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01528,506,410 - 28,536,024 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,759,342 - 26,788,962 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01528,486,605 - 28,517,353 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1528,486,617 - 28,517,353 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01532,296,829 - 32,327,619 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41527,516,839 - 27,546,646 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11527,532,538 - 27,562,346 (-)NCBI
Celera1525,083,705 - 25,113,041 (-)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3',5'-cyclic UMP  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-phenylbutyric acid  (ISO)
5-bromo-2'-deoxyuridine  (ISO)
5-fluorouracil  (ISO)
acetylsalicylic acid  (EXP)
acrolein  (ISO)
actinomycin D  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butyric acid  (EXP)
caffeine  (ISO)
camptothecin  (ISO)
carbon nanotube  (ISO)
chlormequat chloride  (EXP)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N-nitrosodiethylamine  (ISO)
nicotine  (ISO)
Nutlin-3  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraoxon  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
Propiverine  (EXP)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
testosterone enanthate  (ISO)
tetracaine  (ISO)
tetraphene  (ISO)
thapsigargin  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
Yessotoxin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Post-transcriptional regulation of urokinase-type plasminogen activator receptor expression in lipopolysaccharide-induced acute lung injury. Bhandary YP, etal., Am J Respir Crit Care Med. 2009 Feb 15;179(4):288-98. doi: 10.1164/rccm.200712-1787OC. Epub 2008 Nov 21.
2. Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
3. Differential distribution of heterogeneous nuclear ribonucleoproteins in rat tissues. Faura M, etal., Biochem Biophys Res Commun. 1995 Dec 14;217(2):554-60.
4. Increased expression of cellular RNA-binding proteins in HPV-induced neoplasia and cervical cancer. Fay J, etal., J Med Virol. 2009 May;81(5):897-907. doi: 10.1002/jmv.21406.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Inhibition of the apolipoprotein B mRNA editing enzyme-complex by hnRNP C1 protein and 40S hnRNP complexes. Greeve J, etal., Biol Chem. 1998 Aug-Sep;379(8-9):1063-73.
8. The path of RNA through nuclear pores: apparent entry from the sides into specialized pores. Iborra FJ, etal., J Cell Sci. 2000 Jan;113 Pt 2:291-302.
9. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
10. Up-regulation of a hydrogen peroxide-responsive pre-mRNA binding protein in atherosclerosis and intimal hyperplasia. Panchenko MP, etal., Cardiovasc Pathol. 2009 May-Jun;18(3):167-72. doi: 10.1016/j.carpath.2008.03.008. Epub 2008 May 27.
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. GOA pipeline RGD automated data pipeline
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. The spliceosome: design principles of a dynamic RNP machine. Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.
Additional References at PubMed
PMID:2088340   PMID:7768196   PMID:9128719   PMID:9731529   PMID:10716735   PMID:11432731   PMID:11687588   PMID:11991638   PMID:12477932   PMID:16010978   PMID:16189514   PMID:16210410  
PMID:16217013   PMID:18082603   PMID:20458337   PMID:21516116   PMID:21630459   PMID:22082260   PMID:22365833   PMID:22658674   PMID:22681889   PMID:22720776   PMID:22871113   PMID:24625528  
PMID:25416956   PMID:25719671   PMID:27068509   PMID:29476059   PMID:35352799  


Genomics

Comparative Map Data
Hnrnpc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81527,253,098 - 27,282,779 (-)NCBIGRCr8
mRatBN7.21524,779,593 - 24,809,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,779,450 - 24,809,183 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1527,550,657 - 27,580,436 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01528,506,410 - 28,536,024 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,759,342 - 26,788,962 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01528,486,605 - 28,517,353 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1528,486,617 - 28,517,353 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01532,296,829 - 32,327,619 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41527,516,839 - 27,546,646 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11527,532,538 - 27,562,346 (-)NCBI
Celera1525,083,705 - 25,113,041 (-)NCBICelera
Cytogenetic Map15p14NCBI
HNRNPC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381421,209,147 - 21,269,442 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1421,209,136 - 21,269,494 (-)EnsemblGRCh38hg38GRCh38
GRCh371421,677,306 - 21,737,601 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,747,135 - 20,807,478 (-)NCBINCBI36Build 36hg18NCBI36
Build 341420,748,554 - 20,807,422NCBI
Celera141,537,857 - 1,598,198 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,797,516 - 1,858,479 (-)NCBIHuRef
CHM1_11421,679,085 - 21,739,357 (-)NCBICHM1_1
T2T-CHM13v2.01415,406,559 - 15,466,855 (-)NCBIT2T-CHM13v2.0
Hnrnpc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391452,310,834 - 52,341,462 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1452,310,834 - 52,341,485 (-)EnsemblGRCm39 Ensembl
GRCm381452,073,377 - 52,104,039 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,073,377 - 52,104,028 (-)EnsemblGRCm38mm10GRCm38
MGSCv371452,693,055 - 52,723,703 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361450,996,750 - 51,025,933 (-)NCBIMGSCv36mm8
Celera1449,053,955 - 49,085,339 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1426.79NCBI
Hnrnpc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555501,949,975 - 2,002,297 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555501,949,975 - 2,002,297 (-)NCBIChiLan1.0ChiLan1.0
HNRNPC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,660,425 - 22,721,136 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,877,303 - 21,937,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,022,280 - 2,083,215 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11420,103,594 - 20,163,824 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC475399
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11518,239,810 - 18,299,065 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,724,388 - 18,783,435 (-)NCBIDog10K_Boxer_Tasha
Hnrnpc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864032,458,661 - 32,516,597 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936880368,041 - 425,967 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl777,921,145 - 77,973,078 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1777,921,098 - 77,978,550 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HNRNPC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,677,871 - 21,737,607 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,678,559 - 21,731,430 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605924,696,803 - 24,758,618 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnpc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248257,205,292 - 7,276,889 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248257,198,387 - 7,276,936 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hnrnpc
174 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:70
Count of miRNA genes:32
Interacting mature miRNAs:42
Transcripts:ENSRNOT00000060514, ENSRNOT00000060515
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat

Markers in Region
RH133947  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1482,118,311 - 82,118,514UniSTS
RH 3.4 Map14637.99UniSTS
Cytogenetic Map4q33UniSTS
Cytogenetic Map15p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
15 11 55 144 125 120 77 31 77 12 276 121 112 55 79 43

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001277600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001277601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001277602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY724499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB582273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X16933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000060514   ⟹   ENSRNOP00000057256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,780,237 - 24,809,182 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000060515   ⟹   ENSRNOP00000057257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,779,450 - 24,809,181 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086177   ⟹   ENSRNOP00000074135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,779,459 - 24,805,976 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090378   ⟹   ENSRNOP00000070427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,779,454 - 24,809,183 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102596   ⟹   ENSRNOP00000083174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,779,726 - 24,796,019 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108012   ⟹   ENSRNOP00000078874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,779,673 - 24,809,170 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115318   ⟹   ENSRNOP00000086576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,780,237 - 24,809,181 (-)Ensembl
RefSeq Acc Id: NM_001277600   ⟹   NP_001264529
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,098 - 27,282,715 (-)NCBI
mRatBN7.21524,779,593 - 24,809,212 (-)NCBI
Rnor_6.01528,486,605 - 28,517,353 (-)NCBI
Rnor_5.01532,296,829 - 32,327,619 (-)NCBI
Celera1525,083,705 - 25,113,041 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001277601   ⟹   NP_001264530
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,098 - 27,282,715 (-)NCBI
mRatBN7.21524,779,593 - 24,809,212 (-)NCBI
Rnor_6.01528,486,605 - 28,517,353 (-)NCBI
Rnor_5.01532,296,829 - 32,327,619 (-)NCBI
Celera1525,083,705 - 25,113,041 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001277602   ⟹   NP_001264531
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,098 - 27,282,715 (-)NCBI
mRatBN7.21524,779,593 - 24,809,212 (-)NCBI
Rnor_6.01528,486,605 - 28,517,353 (-)NCBI
Rnor_5.01532,296,829 - 32,327,619 (-)NCBI
Celera1525,083,705 - 25,113,041 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093108   ⟹   XP_038949036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,716 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_039093109   ⟹   XP_038949037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,747 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_039093111   ⟹   XP_038949039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,749 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_039093112   ⟹   XP_038949040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,276,968 (-)NCBI
mRatBN7.21524,779,609 - 24,803,460 (-)NCBI
RefSeq Acc Id: XM_039093113   ⟹   XP_038949041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,746 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_039093114   ⟹   XP_038949042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,716 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_039093115   ⟹   XP_038949043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,728 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_039093116   ⟹   XP_038949044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,716 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_039093118   ⟹   XP_038949046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,716 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_039093119   ⟹   XP_038949047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,747 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_039093121   ⟹   XP_038949049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,779 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_039093122   ⟹   XP_038949050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,728 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_039093123   ⟹   XP_038949051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,747 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_039093125   ⟹   XP_038949053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,749 (-)NCBI
mRatBN7.21524,779,609 - 24,809,213 (-)NCBI
RefSeq Acc Id: XM_063274102   ⟹   XP_063130172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,696 (-)NCBI
RefSeq Acc Id: XM_063274103   ⟹   XP_063130173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,276,968 (-)NCBI
RefSeq Acc Id: XM_063274104   ⟹   XP_063130174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,716 (-)NCBI
RefSeq Acc Id: XM_063274105   ⟹   XP_063130175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,747 (-)NCBI
RefSeq Acc Id: XM_063274106   ⟹   XP_063130176
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,276,969 (-)NCBI
RefSeq Acc Id: XM_063274107   ⟹   XP_063130177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,747 (-)NCBI
RefSeq Acc Id: XM_063274108   ⟹   XP_063130178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,695 (-)NCBI
RefSeq Acc Id: XM_063274109   ⟹   XP_063130179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,675 (-)NCBI
RefSeq Acc Id: XM_063274110   ⟹   XP_063130180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,716 (-)NCBI
RefSeq Acc Id: XM_063274111   ⟹   XP_063130181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,716 (-)NCBI
RefSeq Acc Id: XM_063274113   ⟹   XP_063130183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,716 (-)NCBI
RefSeq Acc Id: XM_063274114   ⟹   XP_063130184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,276,966 (-)NCBI
RefSeq Acc Id: XM_063274115   ⟹   XP_063130185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,716 (-)NCBI
RefSeq Acc Id: XM_063274116   ⟹   XP_063130186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,747 (-)NCBI
RefSeq Acc Id: XM_063274117   ⟹   XP_063130187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,253,114 - 27,282,716 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001264529 (Get FASTA)   NCBI Sequence Viewer  
  NP_001264530 (Get FASTA)   NCBI Sequence Viewer  
  NP_001264531 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949036 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949037 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949039 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949040 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949041 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949042 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949043 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949044 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949046 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949047 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949049 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949050 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949053 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130172 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130173 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130174 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130175 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130176 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130177 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130178 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130179 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130180 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130181 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130183 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130184 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130185 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130186 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130187 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH97346 (Get FASTA)   NCBI Sequence Viewer  
  CAA34808 (Get FASTA)   NCBI Sequence Viewer  
  EDL88467 (Get FASTA)   NCBI Sequence Viewer  
  EDL88468 (Get FASTA)   NCBI Sequence Viewer  
  EDL88469 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000057256.4
  ENSRNOP00000057257.4
  ENSRNOP00000074135.2
  ENSRNOP00000083174.1
  ENSRNOP00000086576.1
GenBank Protein G3V9R8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001264531   ⟸   NM_001277602
- Peptide Label: isoform 3
- UniProtKB: A0A0G2K7B3 (UniProtKB/TrEMBL),   A6KEG2 (UniProtKB/TrEMBL),   A0A8I6GAF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001264530   ⟸   NM_001277601
- Peptide Label: isoform 2
- UniProtKB: Q4V8K6 (UniProtKB/Swiss-Prot),   G3V9R8 (UniProtKB/Swiss-Prot),   D4ACR0 (UniProtKB/Swiss-Prot),   A0A140TAH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001264529   ⟸   NM_001277600
- Peptide Label: isoform 1
- UniProtKB: Q4V8K6 (UniProtKB/Swiss-Prot),   G3V9R8 (UniProtKB/Swiss-Prot),   D4ACR0 (UniProtKB/Swiss-Prot),   A6KEG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038949049   ⟸   XM_039093121
- Peptide Label: isoform X4
- UniProtKB: Q4V8K6 (UniProtKB/Swiss-Prot),   G3V9R8 (UniProtKB/Swiss-Prot),   D4ACR0 (UniProtKB/Swiss-Prot),   A0A140TAH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949044   ⟸   XM_039093116
- Peptide Label: isoform X3
- UniProtKB: Q4V8K6 (UniProtKB/Swiss-Prot),   G3V9R8 (UniProtKB/Swiss-Prot),   D4ACR0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038949042   ⟸   XM_039093114
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G2H2 (UniProtKB/TrEMBL),   A0A8I6GAF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949039   ⟸   XM_039093111
- Peptide Label: isoform X1
- UniProtKB: Q4V8K6 (UniProtKB/Swiss-Prot),   G3V9R8 (UniProtKB/Swiss-Prot),   D4ACR0 (UniProtKB/Swiss-Prot),   A6KEG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949053   ⟸   XM_039093125
- Peptide Label: isoform X6
- UniProtKB: Q4V8K6 (UniProtKB/Swiss-Prot),   G3V9R8 (UniProtKB/Swiss-Prot),   D4ACR0 (UniProtKB/Swiss-Prot),   A0A0G2JXW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949050   ⟸   XM_039093122
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K7B3 (UniProtKB/TrEMBL),   A6KEG2 (UniProtKB/TrEMBL),   A0A8I6GAF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949043   ⟸   XM_039093115
- Peptide Label: isoform X3
- UniProtKB: Q4V8K6 (UniProtKB/Swiss-Prot),   G3V9R8 (UniProtKB/Swiss-Prot),   D4ACR0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038949041   ⟸   XM_039093113
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G2H2 (UniProtKB/TrEMBL),   A0A8I6GAF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949046   ⟸   XM_039093118
- Peptide Label: isoform X4
- UniProtKB: Q4V8K6 (UniProtKB/Swiss-Prot),   G3V9R8 (UniProtKB/Swiss-Prot),   D4ACR0 (UniProtKB/Swiss-Prot),   A0A140TAH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949036   ⟸   XM_039093108
- Peptide Label: isoform X1
- UniProtKB: Q4V8K6 (UniProtKB/Swiss-Prot),   G3V9R8 (UniProtKB/Swiss-Prot),   D4ACR0 (UniProtKB/Swiss-Prot),   A6KEG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949051   ⟸   XM_039093123
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K7B3 (UniProtKB/TrEMBL),   A6KEG2 (UniProtKB/TrEMBL),   A0A8I6GAF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949047   ⟸   XM_039093119
- Peptide Label: isoform X4
- UniProtKB: Q4V8K6 (UniProtKB/Swiss-Prot),   G3V9R8 (UniProtKB/Swiss-Prot),   D4ACR0 (UniProtKB/Swiss-Prot),   A0A140TAH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949037   ⟸   XM_039093109
- Peptide Label: isoform X1
- UniProtKB: Q4V8K6 (UniProtKB/Swiss-Prot),   G3V9R8 (UniProtKB/Swiss-Prot),   D4ACR0 (UniProtKB/Swiss-Prot),   A6KEG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949040   ⟸   XM_039093112
- Peptide Label: isoform X1
- UniProtKB: Q4V8K6 (UniProtKB/Swiss-Prot),   G3V9R8 (UniProtKB/Swiss-Prot),   D4ACR0 (UniProtKB/Swiss-Prot),   A6KEG3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000057256   ⟸   ENSRNOT00000060514
Ensembl Acc Id: ENSRNOP00000070427   ⟸   ENSRNOT00000090378
Ensembl Acc Id: ENSRNOP00000083174   ⟸   ENSRNOT00000102596
Ensembl Acc Id: ENSRNOP00000078874   ⟸   ENSRNOT00000108012
Ensembl Acc Id: ENSRNOP00000074135   ⟸   ENSRNOT00000086177
Ensembl Acc Id: ENSRNOP00000057257   ⟸   ENSRNOT00000060515
Ensembl Acc Id: ENSRNOP00000086576   ⟸   ENSRNOT00000115318
RefSeq Acc Id: XP_063130186   ⟸   XM_063274116
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JXW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130177   ⟸   XM_063274107
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063130175   ⟸   XM_063274105
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G2H2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130187   ⟸   XM_063274117
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JXW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130185   ⟸   XM_063274115
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JXW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130183   ⟸   XM_063274113
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K7B3 (UniProtKB/TrEMBL),   A6KEG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130174   ⟸   XM_063274104
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G2H2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130180   ⟸   XM_063274110
- Peptide Label: isoform X4
- UniProtKB: A0A140TAH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130181   ⟸   XM_063274111
- Peptide Label: isoform X4
- UniProtKB: A0A140TAH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130172   ⟸   XM_063274102
- Peptide Label: isoform X1
- UniProtKB: A6KEG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130178   ⟸   XM_063274108
- Peptide Label: isoform X4
- UniProtKB: A0A140TAH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130179   ⟸   XM_063274109
- Peptide Label: isoform X4
- UniProtKB: A0A140TAH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130176   ⟸   XM_063274106
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G2H2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130173   ⟸   XM_063274103
- Peptide Label: isoform X1
- UniProtKB: A6KEG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130184   ⟸   XM_063274114
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K7B3 (UniProtKB/TrEMBL),   A6KEG2 (UniProtKB/TrEMBL)
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9R8-F1-model_v2 AlphaFold G3V9R8 1-298 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699635
Promoter ID:EPDNEW_R10159
Type:multiple initiation site
Name:Hnrnpc_1
Description:heterogeneous nuclear ribonucleoprotein C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01528,517,312 - 28,517,372EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309982 AgrOrtholog
BioCyc Gene G2FUF-13989 BioCyc
Ensembl Genes ENSRNOG00000011621 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000060514.4 UniProtKB/TrEMBL
  ENSRNOT00000060515.5 UniProtKB/TrEMBL
  ENSRNOT00000086177.2 UniProtKB/TrEMBL
  ENSRNOT00000102596.1 UniProtKB/TrEMBL
  ENSRNOT00000115318.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7442283 IMAGE-MGC_LOAD
InterPro hnRNP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_HNRPC/RALY_subfam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:290046 UniProtKB/TrEMBL
MGC_CLONE MGC:114359 IMAGE-MGC_LOAD
NCBI Gene 290046 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEINS C1/C2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hnrnpc PhenoGen
PIRSF hnRNP-C_Raly UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011621 RatGTEx
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JXW4 ENTREZGENE
  A0A0G2K7B3 ENTREZGENE, UniProtKB/TrEMBL
  A0A140TAH9 ENTREZGENE, UniProtKB/TrEMBL
  A0A140TAI3_RAT UniProtKB/TrEMBL
  A0A8I6A698_RAT UniProtKB/TrEMBL
  A0A8I6G2H2 ENTREZGENE
  A0A8I6GAF8 ENTREZGENE, UniProtKB/TrEMBL
  A6KEG2 ENTREZGENE, UniProtKB/TrEMBL
  A6KEG3 ENTREZGENE, UniProtKB/TrEMBL
  D4ACR0 ENTREZGENE
  G3V9R8 ENTREZGENE, UniProtKB/Swiss-Prot
  Q4V8K6 ENTREZGENE
UniProt Secondary D4ACR0 UniProtKB/Swiss-Prot
  Q4V8K6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-23 Hnrnpc  heterogeneous nuclear ribonucleoprotein C  Hnrnpc  heterogeneous nuclear ribonucleoprotein C (C1/C2)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Hnrnpc  heterogeneous nuclear ribonucleoprotein C (C1/C2)  Hnrnpc  heterogeneous nuclear ribonucleoprotein C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Hnrnpc  heterogeneous nuclear ribonucleoprotein C  Hnrpc  heterogeneous nuclear ribonucleoprotein C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Hnrpc  heterogeneous nuclear ribonucleoprotein C  Hnrpc_predicted  heterogeneous nuclear ribonucleoprotein C (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Hnrpc_predicted  heterogeneous nuclear ribonucleoprotein C (predicted)      Symbol and Name status set to approved 70820 APPROVED