Rhobtb2 (Rho-related BTB domain containing 2) - Rat Genome Database

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Gene: Rhobtb2 (Rho-related BTB domain containing 2) Rattus norvegicus
Analyze
Symbol: Rhobtb2
Name: Rho-related BTB domain containing 2
RGD ID: 1309924
Description: Predicted to enable several functions, including GTP binding activity; GTPase activity; and ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in several processes, including cytoskeleton organization; protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in endosome membrane. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in several cellular components, including cytoplasmic vesicle; cytoskeleton; and plasma membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 64. Orthologous to human RHOBTB2 (Rho related BTB domain containing 2); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH (+)-schisandrin B; 1-nitropropane; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC306004; MGC109268; rho-related BTB domain-containing protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81551,278,024 - 51,298,209 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1551,280,149 - 51,298,209 (-)EnsemblGRCr8
mRatBN7.21544,868,251 - 44,888,436 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1544,870,376 - 44,888,651 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1548,988,257 - 49,006,318 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,099,750 - 50,117,811 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01546,959,089 - 46,977,150 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01551,465,148 - 51,485,562 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1551,465,148 - 51,485,692 (-)Ensemblrn6Rnor6.0
Rnor_5.01555,195,152 - 55,213,442 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41550,166,160 - 50,184,221 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1544,551,274 - 44,569,339 (-)NCBICelera
RGSC_v3.11550,181,940 - 50,200,001 (-)NCBI
Cytogenetic Map15p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-alpha-phellandrene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-nitropropane  (EXP)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (EXP)
2,6-diaminotoluene  (EXP)
2-acetamidofluorene  (EXP)
2-nitro-p-phenylenediamine  (EXP)
2-nitropropane  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-acetylaminofluorene  (EXP)
4-nitro-1,2-phenylenediamine  (EXP)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
amitrole  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
calcium silicate  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methimazole  (EXP)
nitrates  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
phytoestrogen  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Rhobtb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81551,278,024 - 51,298,209 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1551,280,149 - 51,298,209 (-)EnsemblGRCr8
mRatBN7.21544,868,251 - 44,888,436 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1544,870,376 - 44,888,651 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1548,988,257 - 49,006,318 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,099,750 - 50,117,811 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01546,959,089 - 46,977,150 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01551,465,148 - 51,485,562 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1551,465,148 - 51,485,692 (-)Ensemblrn6Rnor6.0
Rnor_5.01555,195,152 - 55,213,442 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41550,166,160 - 50,184,221 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1544,551,274 - 44,569,339 (-)NCBICelera
RGSC_v3.11550,181,940 - 50,200,001 (-)NCBI
Cytogenetic Map15p11NCBI
RHOBTB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,950,813 - 23,020,199 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,987,417 - 23,020,509 (+)Ensemblhg38GRCh38
GRCh37822,844,764 - 22,877,712 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36822,913,407 - 22,933,653 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34822,913,406 - 22,933,653NCBI
Celera821,807,292 - 21,840,065 (+)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef821,389,448 - 21,422,165 (+)NCBIHuRef
CHM1_1823,047,120 - 23,079,900 (+)NCBICHM1_1
T2T-CHM13v2.0823,225,786 - 23,295,160 (+)NCBIT2T-CHM13v2.0
Rhobtb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,022,439 - 70,062,296 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,022,439 - 70,043,085 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381469,784,990 - 69,824,847 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,784,990 - 69,805,636 (-)Ensemblmm10GRCm38
MGSCv371470,184,797 - 70,205,352 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361468,520,072 - 68,540,550 (-)NCBIMGSCv36mm8
Celera1467,318,613 - 67,338,964 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.1NCBI
Rhobtb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540346,371,054 - 46,390,551 (+)Ensembl
ChiLan1.0NW_00495540346,367,390 - 46,390,551 (+)NCBIChiLan1.0ChiLan1.0
RHOBTB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2741,501,279 - 41,525,596 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1817,228,486 - 17,251,763 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0822,246,075 - 22,269,443 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1819,189,218 - 19,209,420 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl819,183,931 - 19,209,420 (+)EnsemblpanPan2panpan1.1
RHOBTB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12534,299,363 - 34,329,052 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2534,300,780 - 34,322,217 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2534,888,816 - 34,917,046 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02534,508,848 - 34,536,610 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2534,508,868 - 34,537,055 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12534,455,614 - 34,483,340 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02534,309,912 - 34,337,660 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02534,461,984 - 34,492,656 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rhobtb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494311,885,757 - 11,905,247 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365556,664,768 - 6,682,822 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365556,664,811 - 6,684,756 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHOBTB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl147,222,981 - 7,254,780 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1147,223,209 - 7,254,813 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2147,945,442 - 7,979,813 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RHOBTB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1821,069,255 - 21,098,000 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl821,079,411 - 21,097,026 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605221,127,455 - 21,158,187 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rhobtb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475818,444,608 - 18,464,071 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475818,444,684 - 18,463,988 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Rhobtb2
126 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:60
Interacting mature miRNAs:69
Transcripts:ENSRNOT00000023876
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)154367724488677244Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154046315285463152Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)154367724488677244Rat
2306968Anxrr23Anxiety related response QTL 234.83reflex trait (VT:0001961)amplitude of the acoustic startle response (CMO:0001520)154480677352597086Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
7411725Strs7Sensitivity to stroke QTL 73.8cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)154446544756583797Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)154367724488677244Rat

Markers in Region
RH135155  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21544,870,379 - 44,870,594 (+)MAPPERmRatBN7.2
Rnor_6.01551,467,277 - 51,467,491NCBIRnor6.0
Rnor_5.01555,195,157 - 55,195,371UniSTSRnor5.0
RGSC_v3.41550,166,165 - 50,166,379UniSTSRGSC3.4
Celera1544,551,279 - 44,551,493UniSTS
Cytogenetic Map15p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000023876   ⟹   ENSRNOP00000023872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1551,280,149 - 51,294,018 (-)Ensembl
mRatBN7.2 Ensembl1544,870,376 - 44,888,651 (-)Ensembl
Rnor_6.0 Ensembl1551,465,148 - 51,485,692 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101317   ⟹   ENSRNOP00000082111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1551,280,149 - 51,297,020 (-)Ensembl
mRatBN7.2 Ensembl1544,870,376 - 44,888,651 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117351   ⟹   ENSRNOP00000088428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1551,280,149 - 51,298,209 (-)Ensembl
mRatBN7.2 Ensembl1544,870,376 - 44,888,436 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000135225   ⟹   ENSRNOP00000099298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1551,280,149 - 51,296,824 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000154149   ⟹   ENSRNOP00000101499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1551,280,149 - 51,297,151 (-)Ensembl
RefSeq Acc Id: NM_001013133   ⟹   NP_001013151
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81551,280,148 - 51,298,209 (-)NCBI
mRatBN7.21544,870,375 - 44,888,436 (-)NCBI
Rnor_6.01551,467,272 - 51,485,562 (-)NCBI
Rnor_5.01555,195,152 - 55,213,442 (-)NCBI
RGSC_v3.41550,166,160 - 50,184,221 (-)RGD
Celera1544,551,274 - 44,569,339 (-)RGD
Sequence:
RefSeq Acc Id: XM_017599699   ⟹   XP_017455188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81551,278,024 - 51,296,834 (-)NCBI
mRatBN7.21544,868,251 - 44,884,524 (-)NCBI
Rnor_6.01551,465,148 - 51,485,195 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063274298   ⟹   XP_063130368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81551,278,024 - 51,297,778 (-)NCBI
RefSeq Acc Id: NP_001013151   ⟸   NM_001013133
- UniProtKB: Q5BJV7 (UniProtKB/TrEMBL),   A6HTI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455188   ⟸   XM_017599699
- Peptide Label: isoform X1
- UniProtKB: A6HTI2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023872   ⟸   ENSRNOT00000023876
Ensembl Acc Id: ENSRNOP00000082111   ⟸   ENSRNOT00000101317
Ensembl Acc Id: ENSRNOP00000088428   ⟸   ENSRNOT00000117351
RefSeq Acc Id: XP_063130368   ⟸   XM_063274298
- Peptide Label: isoform X2
- UniProtKB: A6HTI2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101499   ⟸   ENSRNOT00000154149
Ensembl Acc Id: ENSRNOP00000099298   ⟸   ENSRNOT00000135225
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BJV7-F1-model_v2 AlphaFold Q5BJV7 1-728 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699800
Promoter ID:EPDNEW_R10324
Type:single initiation site
Name:Rhobtb2_1
Description:Rho-related BTB domain containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01551,485,768 - 51,485,828EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309924 AgrOrtholog
BioCyc Gene G2FUF-13251 BioCyc
Ensembl Genes ENSRNOG00000017373 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023876.8 UniProtKB/TrEMBL
  ENSRNOT00000101317.1 UniProtKB/TrEMBL
  ENSRNOT00000117351 ENTREZGENE
  ENSRNOT00000117351.1 UniProtKB/TrEMBL
  ENSRNOT00000135225 ENTREZGENE
  ENSRNOT00000154149 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7311705 IMAGE-MGC_LOAD
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Ras_GTPase UniProtKB/TrEMBL
  Small_GTPase_Rho UniProtKB/TrEMBL
KEGG Report rno:306004 UniProtKB/TrEMBL
MGC_CLONE MGC:109268 IMAGE-MGC_LOAD
NCBI Gene 306004 ENTREZGENE
PANTHER PTHR24072 UniProtKB/TrEMBL
  SPECKLE-TYPE POZ PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  Ras UniProtKB/TrEMBL
PhenoGen Rhobtb2 PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017373 RatGTEx
SMART BTB UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8I6G701_RAT UniProtKB/TrEMBL
  A6HTI2 ENTREZGENE, UniProtKB/TrEMBL
  F7FCC0_RAT UniProtKB/TrEMBL
  Q5BJV7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Rhobtb2  Rho-related BTB domain containing 2  Rhobtb2_predicted  Rho-related BTB domain containing 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rhobtb2_predicted  Rho-related BTB domain containing 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED