Dlx1 (distal-less homeobox 1) - Rat Genome Database

Name: Dlx1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes Community Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Dlx1 (distal-less homeobox 1) Rattus norvegicus

Analyze

Symbol:

Dlx1

Name:

distal-less homeobox 1

RGD ID:

1309593

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in several processes, including negative regulation of cellular response to growth factor stimulus; regulation of neuron differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including forebrain development; negative regulation of Notch signaling pathway; and negative regulation of oligodendrocyte differentiation. Predicted to be located in cytosol and nucleoplasm. Orthologous to human DLX1 (distal-less homeobox 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

homeobox Dlx1; homeobox protein DLX-1; LOC296500; MGC189409

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	56,356,190 - 56,360,780 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	56,356,190 - 56,360,780 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	59,754,121 - 59,758,700 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	68,337,729 - 68,342,308 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	66,099,889 - 66,104,437 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	58,164,931 - 58,169,521 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	58,164,931 - 58,169,521 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	64,650,292 - 64,654,882 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	53,837,052 - 53,841,642 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	53,733,423 - 53,738,014 (+)	NCBI
Celera	3	55,903,832 - 55,908,422 (+)	NCBI		Celera
Cytogenetic Map	3	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

Craniofacial Abnormalities (ISO)

genetic disease (ISO)

split hand-foot malformation 5 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

15-acetyldeoxynivalenol (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

adefovir pivoxil (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chloroacetaldehyde (ISO)

choline (ISO)

cisplatin (ISO)

Cuprizon (EXP)

Cyclopamine (ISO)

diarsenic trioxide (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

folic acid (ISO)

gentamycin (EXP)

hydroquinone O-beta-D-glucopyranoside (ISO)

ifosfamide (ISO)

iron dichloride (ISO)

kojic acid (ISO)

L-methionine (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel sulfate (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to BMP stimulus (IEA,ISO,ISS)

cellular response to transforming growth factor beta stimulus (IEA,ISO,ISS)

cerebral cortex GABAergic interneuron differentiation (ISO)

cerebral cortex GABAergic interneuron fate commitment (IEA,ISO)

embryonic skeletal system development (IEA,ISO)

forebrain neuron differentiation (IEA,ISO)

GABAergic neuron differentiation (ISO)

hippocampus development (IEA,ISO)

negative regulation of BMP signaling pathway (IEA,ISO,ISS)

negative regulation of cellular response to transforming growth factor beta stimulus (IEA,ISO,ISS)

negative regulation of neuron apoptotic process (IEA,ISO)

negative regulation of Notch signaling pathway (IEA,ISO)

negative regulation of oligodendrocyte differentiation (IEA,ISO)

negative regulation of photoreceptor cell differentiation (IEA,ISO,ISS)

negative regulation of transcription by RNA polymerase II (IEA,ISO,ISS)

neuroblast differentiation (IEA,ISO)

neuron apoptotic process (IEA,ISO)

Notch signaling pathway (IEA,ISO)

odontogenesis of dentin-containing tooth (IEA,ISO)

oligodendrocyte differentiation (IEA,ISO)

positive regulation of amacrine cell differentiation (IEA,ISO,ISS)

positive regulation of cell differentiation (ISO,ISS)

positive regulation of transcription by RNA polymerase II (IEA,ISO,ISS)

proximal/distal pattern formation (IEA,ISO)

regulation of transcription by RNA polymerase II (ISO)

subpallium development (IEA,ISO)

Cellular Component

cytosol (IEA,ISO)

intracellular membrane-bounded organelle (ISO)

nucleoplasm (IEA,ISO)

nucleus (ISO,ISS)

Molecular Function

chromatin binding (IEA,ISO)

DNA binding (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA,ISO)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA,ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8613727	PMID:9187081	PMID:9415433	PMID:10516593	PMID:11163262	PMID:12397111	PMID:12477932	PMID:12724837	PMID:14671321	PMID:14769946	PMID:15028753	PMID:16007083
PMID:17678855	PMID:21875655	PMID:22920256	PMID:23042297	PMID:24489801

Genomics

Comparative Map Data

Dlx1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	56,356,190 - 56,360,780 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	56,356,190 - 56,360,780 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	59,754,121 - 59,758,700 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	68,337,729 - 68,342,308 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	66,099,889 - 66,104,437 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	58,164,931 - 58,169,521 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	58,164,931 - 58,169,521 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	64,650,292 - 64,654,882 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	53,837,052 - 53,841,642 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	53,733,423 - 53,738,014 (+)	NCBI
Celera	3	55,903,832 - 55,908,422 (+)	NCBI		Celera
Cytogenetic Map	3	q23	NCBI

DLX1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	172,085,507 - 172,089,674 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	172,084,740 - 172,089,677 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	172,950,235 - 172,954,402 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	172,658,454 - 172,662,648 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	166,566,309 - 166,570,503 (+)	NCBI		Celera
Cytogenetic Map	2	q31.1	NCBI
HuRef	2	164,830,459 - 164,834,653 (+)	NCBI		HuRef
CHM1_1	2	172,957,684 - 172,961,878 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	172,570,383 - 172,575,917 (+)	NCBI		T2T-CHM13v2.0

Dlx1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	71,358,457 - 71,364,325 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	71,358,457 - 71,364,325 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	71,528,113 - 71,533,981 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	71,528,113 - 71,533,981 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	71,367,502 - 71,372,037 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	71,330,284 - 71,334,819 (+)	NCBI		MGSCv36	mm8
Celera	2	73,193,503 - 73,198,048 (+)	NCBI		Celera
Cytogenetic Map	2	C2	NCBI
cM Map	2	42.61	NCBI

Dlx1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	2,920,478 - 2,924,667 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955449	2,920,705 - 2,924,667 (-)	NCBI	ChiLan1.0	ChiLan1.0

DLX1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	2B	74,784,291 - 74,788,828 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	59,382,156 - 59,387,100 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	176,839,361 - 176,843,909 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	176,839,721 - 176,843,909 (+)	Ensembl	panpan1.1		panPan2

DLX1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	16,485,158 - 16,489,397 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	16,484,859 - 16,487,886 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	16,493,520 - 16,498,111 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	16,605,670 - 16,610,243 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	16,605,155 - 16,610,240 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	16,693,224 - 16,697,802 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	16,693,589 - 16,698,176 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	16,797,500 - 16,802,082 (+)	NCBI		UU_Cfam_GSD_1.0

Dlx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	133,693,510 - 133,698,405 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936509	2,248,181 - 2,250,991 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936509	2,248,181 - 2,250,991 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DLX1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	78,185,790 - 78,191,226 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	78,186,667 - 78,191,788 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	87,613,190 - 87,617,605 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DLX1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	57,586,452 - 57,599,071 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	57,590,838 - 57,595,266 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	141,953,127 - 141,958,074 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dlx1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624787	9,514,573 - 9,519,724 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624787	9,514,170 - 9,519,309 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Dlx1
8 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	181
Count of miRNA genes:	122
Interacting mature miRNAs:	156
Transcripts:	ENSRNOT00000002078
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	16954708	61954708	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
2302055	Pia30	Pristane induced arthritis QTL 30	3.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	3	27936919	72936919	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	28249687	73249687	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	28249687	73249687	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	28249687	73249687	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	28249687	73249687	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	28249687	73249687	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	28468571	73468571	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	28468571	73468571	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	30684642	75684642	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	30684642	75684642	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
11565451	Bw177	Body weight QTL 177		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	3	31426403	70668733	Rat
11565452	Kidm57	Kidney mass QTL 57		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	31426403	70668733	Rat
12879866	Cm94	Cardiac mass QTL 94		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	31426403	70668733	Rat
12879867	Cm95	Cardiac mass QTL 95		0.047	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	31426403	70668733	Rat
12879868	Am6	Aortic mass QTL 6		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	31426403	70668733	Rat
2301400	Cm68	Cardiac mass QTL 68		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	31426403	70668733	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	33703347	61017857	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	78196190	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	38517803	83517803	Rat
2302276	Bw82	Body weight QTL 82	4.32		body mass (VT:0001259)	body weight (CMO:0000012)	3	39454637	62951183	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	39454637	89115240	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	39454637	89115240	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	41874578	104104347	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	43827364	90905114	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1582249	Bw77	Body weight QTL 77	3.2	0.0025	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	64655484	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	53184692	89878207	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	53781112	91609953	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	53781112	91609953	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	53781112	91609953	Rat

Markers in Region

BE112823

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	56,359,276 - 56,359,426 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	58,168,018 - 58,168,167	NCBI	Rnor6.0
Rnor_5.0	3	64,653,379 - 64,653,528	UniSTS	Rnor5.0
RGSC_v3.4	3	53,840,139 - 53,840,288	UniSTS	RGSC3.4
Celera	3	55,906,919 - 55,907,068	UniSTS
RH 3.4 Map	4	403.05	UniSTS
Cytogenetic Map	3	q21	UniSTS

AU048745

Rat Assembly	Chr	Position (strand)	Source
Cytogenetic Map	5	q32	UniSTS
Cytogenetic Map	13	q24	UniSTS
Cytogenetic Map	6	q32	UniSTS
Cytogenetic Map	17	p12	UniSTS
Cytogenetic Map	16	p14	UniSTS
Cytogenetic Map	13	q26	UniSTS
Cytogenetic Map	10	q22	UniSTS
Cytogenetic Map	7	q11	UniSTS
Cytogenetic Map	8	q24	UniSTS
Cytogenetic Map	5	q21	UniSTS
Cytogenetic Map	4	q24	UniSTS
Cytogenetic Map	2	q11	UniSTS
Cytogenetic Map	1	q54	UniSTS
Cytogenetic Map	1	q36	UniSTS
Cytogenetic Map	18	p11	UniSTS
Cytogenetic Map	13	q13	UniSTS
Cytogenetic Map	10	q24	UniSTS
Cytogenetic Map	8	q31	UniSTS
Cytogenetic Map	3	q21	UniSTS
Cytogenetic Map	13	p13	UniSTS
Cytogenetic Map	1	q21	UniSTS
Cytogenetic Map	11	q23	UniSTS
Cytogenetic Map	10	q31	UniSTS
Cytogenetic Map	16	q12.2	UniSTS
Cytogenetic Map	3	q24	UniSTS
Cytogenetic Map	5	q36	UniSTS
Cytogenetic Map	3	p13	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									43
Low	1	6							23	12	16
Below cutoff	2	27	25	10	8	10	2	2	6	15	18	6	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC167073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	S81923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000002078 ⟹ ENSRNOP00000002078

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	56,356,190 - 56,360,780 (+)	Ensembl
Rnor_6.0 Ensembl	3	58,164,931 - 58,169,521 (+)	Ensembl

RefSeq Acc Id:

NM_001100531 ⟹ NP_001094001

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	56,356,190 - 56,360,780 (+)	NCBI
Rnor_6.0	3	58,164,931 - 58,169,521 (+)	NCBI
Rnor_5.0	3	64,650,292 - 64,654,882 (+)	NCBI
RGSC_v3.4	3	53,837,052 - 53,841,642 (+)	RGD
Celera	3	55,903,832 - 55,908,422 (+)	RGD

Sequence:

show sequence

CAGGCGTTGGGGGCGGGCGAAGGGTGGGGACAGCAAGGGGGAGGGCGACGGCAGGGCGCGGCTG
GTTGGTTTCTGGGGCGGGAAGCGCGCGAGGGAGGCGGGAGGCTGGAGTCGCGCGCCTTCGAGGT
CCCAGCGCGGACGCCGCAGCCCATTGTGCGTCCCGTTCCGCGCGCTCTGTTGCAGAGGAGCCCC
GGCCGGGACGTGTGGACCCGACTCTCCCCAGGCCCGGCCGCGTCGCCCGCTCTAGTCCAGCAGA
GCCGGAGCTTCTCGGACCAATCCCCGGTGATTATGCAAGAGAGCCGACCAATCAGCTCCACCAG
CTCATGAATATTTATGACCTTGGCTGAGTCAAAGCTTTGAACCGAGTTTGGGGAGCTCGGCAGC
ATCATGCTTAGACTTTTCAAAGAGACAAACTCCATTTTCTTATGAATGGAAAGTGAAAACCCCT
GTTCCGCTTAAATTGGGTTCCTTCCTGTCCTGAGAAACATAGAGACCCCCAAAAGGGAAGCAGA
GGAGAAAAAGACCCACACCCAGACCCCGCGAGAAGAGATGACCATGACCACCATGCCAGAAAGT
CTCAACAGCCCGGTGTCGGGCAAGGCTGTGTTTATGGAGTTTGGGCCGCCCAACCAGCAAATGT
CTCCTTCTCCCATGTCCCACGGGCACTACTCCATGCACTGTTTACACTCGGCGGGCCATTCGCA
GCCCGACGGTGCCTACAGTTCGGCCTCATCCTTCTCCCGACCGCTGGGCTACCCCTACGTCAAC
TCGGTCAGCAGCCACGCGTCCAGCCCCTACATCAGTTCCGTGCAGTCCTACCCCGGCAGCGCCA
GCCTCGCCCAGAGCCGCCTGGAGGACCCAGGGGCGGACTCCGAGAAGAGCACCGTGGTGGAAGG
CGGAGAAGTGCGCTTTAACGGCAAAGGGAAAAAGATCCGTAAACCCAGGACAATTTATTCCAGT
TTGCAGTTGCAGGCTTTGAACCGGAGGTTCCAACAAACTCAGTACCTAGCTCTGCCTGAGAGGG
CGGAGCTGGCGGCCTCCTTGGGACTCACACAGACTCAGGTCAAGATATGGTTCCAGAACAAACG
CTCCAAGTTCAAGAAGCTGATGAAGCAAGGCGGGGCAGCTCTGGAGGGCAGCGCGCTGGCGAAT
GGCAGGGCCTTGTCTGCCGGCTCCCCACCGGTACCACCCGGCTGGAATCCGAATTCCTCCTCTG
GGAAGGGCTCCGGCAGCAGCGCTGGCTCCTACGTCCCCAGCTACACGTCGTGGTATCCCTCAGC
GCACCAAGAAGCTATGCAGCAGCCTCAACTGATGTGAGGTTATCAGTTCGCACTCACCCGCTTC
CTGCCCATCTCCCTTGGCCCGGCCCCTCCCGCCTCCAGGTTCATCCACTCATTCGCACGCCCTG
GGCCGGAAGGAGAAGGGCCCAAGGGCGAGGGCGGGGGACGTAAAAATAAAAGAAAAAGGAACAG
TGAAGGCTTGCTGCCTCCTCGGAGCCCCTAAAAATCTGGCCCAGCGACTTTTCAGCTCTGGGCT
TGAACCTGGTTTGGGCCACGGTGACAGCAGAGTGACCTCAAAGCGCAGGCACAACCACTGGAGA
CAGCCAGTGCAACAAGACAAGCCGCTGGACCCGACCAGACTCTCAGCTTTGTGAGACTATCAGG
AAAAAAAAATTACGTAGGAGGGGGAAATATGCTCTTTTTTCGGTTCTGTCCGTCTTTGTCTCCT
TTTTGCACCGTCTGTGCGCCGAAGTCAAGGTCCTCGTGTGTCTGCTGTCCTCTCCAAAAAGTCA
CCAGATCTGAGCCACACTGGTCTGCCGGCAGCCCATCACGAACCCTGGAACGCTTTTTTTCTGA
ATGGTCTTCTTCCGGGCCCTGCTTCACCATCTGTGTAGCTTGTTTGGGCAATGGGGGGAATCGG
AGGGAGGGGGGTTAATTTATTGAAAAACAGACGCTGAGTGTTGGCCAATTCCAAGTTCTCTGAG
ACATGGAGTGGGCACTGTCCAAACACACTATTTACCTTAAACACACCAGAAGAGGGAACAAGGA
TGGGATGGTGGCTTTTTAAGGTACCTGGTAACTTTTGTACTTTGTTGGAATGGAGAAGTGGAGG
CAGAGTGATTTGCATTTTACACGACCCACATGATTAAAAAATAACAAAAGAAATAGTGAAGTAA
GGAAAGATATGTCAAGCCAACAGAATGTTGTCAAAAACGTTTGGACAAGAACACCCGGCCAAGA
AGAAAAAGCATACTTTGGGCAGCAAGAGAGAGGACCAAGTGGGTTTTGGAGAGAAAATAATTTG
TCCTGTGAAAGCACCCCAATTCCAGGTCGCTTGAAAGTCAGACACAAGCAGCTTTAAATGATCC
CCAGTGGCTCGACCACAGAACACAAGTCATCACCCTGAACGCACAGCCTCTGGTGCAGGACCTA
ATCGTTGTACATATTATTATTGTTATTGTTGTTATTAATTATTATTATTGTTCTGTAAACACGT
TGCACAAGCTTAGCCTCTTTCCGTTCCGTCGTGTGTGGCTGTAAACCCCAATGCTTTGTGAAAA
TGAGAATCTTGACATTTTACTTGTGAAATTTGGAAAATGTGACCGATTGAAATCAACCGTGTTT
TGTGTTCTCTATGTCAAAGTTTAGTTTTATATTGAGAATGTTAACTTATTGCTTTGTATCTCGG
GGAGTGGGGGAACTTTGTAAATAAGTTATAAAGTTTCTTTGAGACAGTAAAATTATGGTTTCAA
GAAAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001094001	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67073	(Get FASTA)	NCBI Sequence Viewer
	AAP32272	(Get FASTA)	NCBI Sequence Viewer
	EDL79104	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002078
	ENSRNOP00000002078.2
GenBank Protein	Q64202	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001094001 ⟸ NM_001100531

- UniProtKB:

G3V669 (UniProtKB/TrEMBL), A6HM52 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSASSFS
RPLGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGADSEKSTVVEGGEVRFNGKGKKI
RKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLMKQGGA
ALEGSALANGRALSAGSPPVPPGWNPNSSSGKGSGSSAGSYVPSYTSWYPSAHQEAMQQPQLM

hide sequence

RefSeq Acc Id:

ENSRNOP00000002078 ⟸ ENSRNOT00000002078

Protein Domains

Homeobox

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q64202-F1-model_v2	AlphaFold	Q64202	1-44	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309593	AgrOrtholog
BioCyc Gene	G2FUF-49461	BioCyc
Ensembl Genes	ENSRNOG00000001520	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000002078	ENTREZGENE
	ENSRNOT00000002078.4	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8364673	IMAGE-MGC_LOAD
InterPro	Homeobox	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_eu	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
	HTH_motif	UniProtKB/TrEMBL
KEGG Report	rno:296500	UniProtKB/TrEMBL
MGC_CLONE	MGC:189409	IMAGE-MGC_LOAD
NCBI Gene	296500	ENTREZGENE
PANTHER	HOMEOBOX PROTEIN	UniProtKB/TrEMBL
	HOMEOBOX PROTEIN DLX-1	UniProtKB/TrEMBL
Pfam	Homeobox	UniProtKB/TrEMBL
PhenoGen	Dlx1	PhenoGen
PRINTS	HOMEOBOX	UniProtKB/TrEMBL
	HTHREPRESSR	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001520	RatGTEx
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	Homeodomain_like	UniProtKB/TrEMBL
UniProt	A6HM52	ENTREZGENE, UniProtKB/TrEMBL
	B2RZ95_RAT	UniProtKB/TrEMBL
	DLX1_RAT	UniProtKB/Swiss-Prot
	G3V669	ENTREZGENE, UniProtKB/TrEMBL
	Q64202	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Dlx1	distal-less homeobox 1	Dlx1_predicted	distal-less homeobox 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Dlx1_predicted	distal-less homeobox 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD