Rarres1 (retinoic acid receptor responder 1) - Rat Genome Database

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Gene: Rarres1 (retinoic acid receptor responder 1) Rattus norvegicus
Analyze
Symbol: Rarres1
Name: retinoic acid receptor responder 1
RGD ID: 1309509
Description: Predicted to enable metalloendopeptidase inhibitor activity. Predicted to be involved in negative regulation of cell population proliferation. Predicted to be active in extracellular space. Orthologous to human RARRES1 (retinoic acid receptor responder 1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC310486; retinoic acid receptor responder (tazarotene induced) 1; retinoic acid receptor responder protein 1; tazarotene-induced protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82154,059,761 - 154,094,021 (-)NCBIGRCr8
mRatBN7.22151,749,715 - 151,783,975 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2151,749,715 - 151,783,978 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2158,866,236 - 158,900,895 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02156,916,737 - 156,951,396 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02151,549,483 - 151,584,142 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02164,650,722 - 164,684,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2164,650,722 - 164,684,985 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02184,000,125 - 184,034,596 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42157,332,213 - 157,367,137 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12157,282,175 - 157,317,100 (-)NCBI
Celera2146,119,234 - 146,153,525 (-)NCBICelera
Cytogenetic Map2q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-dichloroaniline  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
8'-apo-beta,psi-caroten-8'-al  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-4-oxoretinol  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (ISO)
amphotericin B  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-carotene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
Cuprizon  (EXP)
dexamethasone  (ISO)
dextran sulfate  (ISO)
dioxygen  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
genistein  (ISO)
indometacin  (ISO)
inulin  (ISO)
irinotecan  (EXP)
isotretinoin  (ISO)
lipopolysaccharide  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
nefazodone  (EXP)
paracetamol  (ISO)
parathion  (ISO)
paricalcitol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (ISO)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium aurothiomalate  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19199708   PMID:22669512   PMID:31905805  


Genomics

Comparative Map Data
Rarres1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82154,059,761 - 154,094,021 (-)NCBIGRCr8
mRatBN7.22151,749,715 - 151,783,975 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2151,749,715 - 151,783,978 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2158,866,236 - 158,900,895 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02156,916,737 - 156,951,396 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02151,549,483 - 151,584,142 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02164,650,722 - 164,684,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2164,650,722 - 164,684,985 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02184,000,125 - 184,034,596 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42157,332,213 - 157,367,137 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12157,282,175 - 157,317,100 (-)NCBI
Celera2146,119,234 - 146,153,525 (-)NCBICelera
Cytogenetic Map2q32NCBI
RARRES1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383158,696,892 - 158,732,457 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3158,696,892 - 158,732,489 (-)EnsemblGRCh38hg38GRCh38
GRCh373158,414,681 - 158,450,246 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363159,897,591 - 159,932,969 (-)NCBINCBI36Build 36hg18NCBI36
Build 343159,897,600 - 159,932,977NCBI
Celera3156,837,482 - 156,873,035 (-)NCBICelera
Cytogenetic Map3q25.32NCBI
HuRef3155,810,741 - 155,846,145 (-)NCBIHuRef
CHM1_13158,377,875 - 158,413,198 (-)NCBICHM1_1
T2T-CHM13v2.03161,470,815 - 161,506,388 (-)NCBIT2T-CHM13v2.0
Rarres1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39367,386,219 - 67,422,856 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl367,386,305 - 67,422,856 (-)EnsemblGRCm39 Ensembl
GRCm38367,478,886 - 67,515,523 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl367,478,972 - 67,515,523 (-)EnsemblGRCm38mm10GRCm38
MGSCv37367,282,808 - 67,319,445 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36367,566,895 - 67,603,542 (-)NCBIMGSCv36mm8
Celera367,604,993 - 67,641,566 (-)NCBICelera
Cytogenetic Map3E1NCBI
cM Map330.99NCBI
Rarres1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554489,437,859 - 9,450,380 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554489,437,365 - 9,466,565 (-)NCBIChiLan1.0ChiLan1.0
RARRES1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22156,637,323 - 156,674,758 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13156,641,642 - 156,679,263 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03155,722,334 - 155,758,228 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13163,773,958 - 163,808,972 (-)NCBIpanpan1.1PanPan1.1panPan2
RARRES1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12351,992,368 - 52,019,242 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2351,992,606 - 52,019,311 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2351,802,164 - 51,839,289 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02352,633,371 - 52,670,234 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12352,213,632 - 52,251,296 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02352,266,803 - 52,304,934 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02352,552,128 - 52,590,336 (-)NCBIUU_Cfam_GSD_1.0
Rarres1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560284,404,308 - 84,437,444 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365195,296,491 - 5,329,557 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365195,296,508 - 5,329,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RARRES1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1398,461,320 - 98,506,173 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11398,461,307 - 98,506,552 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213106,754,584 - 106,798,840 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RARRES1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11532,112,118 - 32,148,808 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1532,112,205 - 32,148,055 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660414,674,461 - 4,711,751 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rarres1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473036,405,270 - 36,434,630 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473036,404,953 - 36,434,723 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rarres1
249 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:40
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000057504
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
631520Bp73Blood pressure QTL 730.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147686913168355276Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1354594Despr10Despair related QTL 102e-06locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat

Markers in Region
RH133295  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22151,749,754 - 151,749,940 (+)MAPPERmRatBN7.2
Rnor_6.02164,650,762 - 164,650,947NCBIRnor6.0
Rnor_5.02184,000,165 - 184,000,350UniSTSRnor5.0
RGSC_v3.42157,332,253 - 157,332,438UniSTSRGSC3.4
Celera2146,119,274 - 146,119,459UniSTS
RH 3.4 Map2996.3UniSTS
Cytogenetic Map2q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 173 135 69 135 20 37 30 18
Low 13 141 48 6 6 24 43 214 76 108 39 24
Below cutoff 6 6 6 16 7

Sequence


Ensembl Acc Id: ENSRNOT00000057504   ⟹   ENSRNOP00000054312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2151,749,715 - 151,783,978 (-)Ensembl
Rnor_6.0 Ensembl2164,650,722 - 164,684,985 (-)Ensembl
RefSeq Acc Id: NM_001014790   ⟹   NP_001014790
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82154,059,761 - 154,094,021 (-)NCBI
mRatBN7.22151,749,715 - 151,783,975 (-)NCBI
Rnor_6.02164,650,722 - 164,684,982 (-)NCBI
Rnor_5.02184,000,125 - 184,034,596 (-)NCBI
RGSC_v3.42157,332,213 - 157,367,137 (-)RGD
Celera2146,119,234 - 146,153,525 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001014790 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05632 (Get FASTA)   NCBI Sequence Viewer  
  AAX39430 (Get FASTA)   NCBI Sequence Viewer  
  EDM00922 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000054312.2
RefSeq Acc Id: NP_001014790   ⟸   NM_001014790
- Peptide Label: precursor
- UniProtKB: Q58NB7 (UniProtKB/TrEMBL),   A6J5L7 (UniProtKB/TrEMBL),   F7FJN9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000054312   ⟸   ENSRNOT00000057504
Protein Domains
Cystatin LXN-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q58NB7-F1-model_v2 AlphaFold Q58NB7 1-284 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691367
Promoter ID:EPDNEW_R1892
Type:multiple initiation site
Name:Rarres1_1
Description:retinoic acid receptor responder 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02164,685,005 - 164,685,065EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309509 AgrOrtholog
BioCyc Gene G2FUF-52864 BioCyc
Ensembl Genes ENSRNOG00000037853 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057504.3 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7386690 IMAGE-MGC_LOAD
InterPro CYSTATIN_LXN UniProtKB/TrEMBL
  Cystatin_sf UniProtKB/TrEMBL
  Prot_inh_latexin UniProtKB/TrEMBL
  TAG1 UniProtKB/TrEMBL
KEGG Report rno:310486 UniProtKB/TrEMBL
MGC_CLONE MGC:124894 IMAGE-MGC_LOAD
NCBI Gene 310486 ENTREZGENE
PANTHER PTHR28591 UniProtKB/TrEMBL
  RETINOIC ACID RECEPTOR RESPONDER PROTEIN 1 UniProtKB/TrEMBL
Pfam Latexin UniProtKB/TrEMBL
  Latexin_C UniProtKB/TrEMBL
PhenoGen Rarres1 PhenoGen
PIRSF Prot_inh_latexin UniProtKB/TrEMBL
  TAG1 UniProtKB/TrEMBL
PROSITE CYSTATIN_LXN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000037853 RatGTEx
Superfamily-SCOP SSF54403 UniProtKB/TrEMBL
UniProt A6J5L7 ENTREZGENE
  F7FJN9 ENTREZGENE, UniProtKB/TrEMBL
  Q58NB7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6J5L7 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-22 Rarres1  retinoic acid receptor responder 1  Rarres1  retinoic acid receptor responder (tazarotene induced) 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Rarres1  retinoic acid receptor responder (tazarotene induced) 1  Rarres1_predicted  retinoic acid receptor responder (tazarotene induced) 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rarres1_predicted  retinoic acid receptor responder (tazarotene induced) 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED