Wdpcp (WD repeat containing planar cell polarity effector) - Rat Genome Database

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Gene: Wdpcp (WD repeat containing planar cell polarity effector) Rattus norvegicus
Analyze
Symbol: Wdpcp
Name: WD repeat containing planar cell polarity effector
RGD ID: 1309501
Description: Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in several processes, including cilium assembly; regulation of embryonic cell shape; and septin cytoskeleton organization. Predicted to act upstream of or within several processes, including embryonic digit morphogenesis; podocyte cell migration; and sensory organ morphogenesis. Predicted to be located in apical plasma membrane; axoneme; and cell cortex. Predicted to be active in axonemal basal plate. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome 15 and congenital heart defects, hamartomas of tongue, and polysyndactyly. Orthologous to human WDPCP (WD repeat containing planar cell polarity effector); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical LOC305552; hypothetical protein LOC305552; LOC305552; RGD1309501; WD repeat-containing and planar cell polarity effector protein fritz homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81499,847,463 - 100,178,392 (+)NCBIGRCr8
mRatBN7.21495,645,955 - 95,977,120 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1495,646,038 - 95,977,113 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1499,998,307 - 100,329,037 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014101,238,649 - 101,569,383 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01497,712,185 - 98,042,918 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014106,393,959 - 106,759,511 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14106,393,959 - 106,759,505 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014106,464,351 - 106,823,523 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414102,274,144 - 102,612,376 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114102,385,822 - 102,631,969 (+)NCBI
Celera1494,655,473 - 94,975,636 (+)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:24302887   PMID:27158779  


Genomics

Comparative Map Data
Wdpcp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81499,847,463 - 100,178,392 (+)NCBIGRCr8
mRatBN7.21495,645,955 - 95,977,120 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1495,646,038 - 95,977,113 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1499,998,307 - 100,329,037 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014101,238,649 - 101,569,383 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01497,712,185 - 98,042,918 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014106,393,959 - 106,759,511 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14106,393,959 - 106,759,505 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014106,464,351 - 106,823,523 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414102,274,144 - 102,612,376 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114102,385,822 - 102,631,969 (+)NCBI
Celera1494,655,473 - 94,975,636 (+)NCBICelera
Cytogenetic Map14q22NCBI
WDPCP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38263,119,559 - 63,840,826 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl263,119,559 - 63,827,843 (-)EnsemblGRCh38hg38GRCh38
GRCh37263,346,694 - 63,815,611 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36263,202,022 - 63,669,355 (-)NCBINCBI36Build 36hg18NCBI36
Celera263,193,063 - 63,660,892 (-)NCBICelera
Cytogenetic Map2p15NCBI
HuRef263,087,448 - 63,556,897 (-)NCBIHuRef
CHM1_1263,278,766 - 63,746,004 (-)NCBICHM1_1
T2T-CHM13v2.0263,126,634 - 63,848,517 (-)NCBIT2T-CHM13v2.0
Wdpcp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391121,521,969 - 21,848,686 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1121,522,235 - 21,848,989 (+)EnsemblGRCm39 Ensembl
GRCm381121,571,969 - 21,898,687 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1121,572,235 - 21,898,989 (+)EnsemblGRCm38mm10GRCm38
MGSCv371121,472,284 - 21,798,689 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,472,284 - 21,798,689 (+)NCBIMGSCv36mm8
Celera1123,720,548 - 24,045,720 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.9NCBI
Wdpcp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542420,723,592 - 21,114,801 (+)NCBIChiLan1.0ChiLan1.0
WDPCP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21262,560,478 - 63,290,579 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A62,564,429 - 63,294,530 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A63,180,279 - 63,658,804 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A64,323,118 - 64,785,322 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A64,325,379 - 64,785,256 (-)Ensemblpanpan1.1panPan2
WDPCP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11062,894,818 - 63,316,555 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1062,877,527 - 63,316,345 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1062,782,163 - 63,206,565 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01063,901,715 - 64,326,640 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1063,884,301 - 64,325,262 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11063,584,532 - 64,009,171 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01063,888,001 - 64,317,400 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01064,185,201 - 64,609,983 (-)NCBIUU_Cfam_GSD_1.0
Wdpcp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629220,000,470 - 20,334,532 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364918,239,284 - 8,485,636 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364918,238,644 - 8,749,172 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDPCP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl378,268,922 - 78,856,893 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1378,435,154 - 78,726,313 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2382,738,390 - 82,792,999 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDPCP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11443,425,405 - 43,896,015 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1443,526,525 - 43,898,300 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604567,944,581 - 68,435,636 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdpcp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247629,970,904 - 10,303,046 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247629,901,021 - 10,303,217 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdpcp
1686 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:9
Count of miRNA genes:9
Interacting mature miRNAs:9
Transcripts:ENSRNOT00000011567
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582201Sffal2Serum free fatty acids level QTL 240.0002blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)149255388695876975Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)148205747195876975Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat

Markers in Region
D14Rat22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21495,876,805 - 95,876,975 (+)MAPPERmRatBN7.2
Rnor_6.014106,641,587 - 106,641,756NCBIRnor6.0
Rnor_5.014106,704,868 - 106,705,037UniSTSRnor5.0
RGSC_v3.414102,509,228 - 102,509,397UniSTSRGSC3.4
RGSC_v3.414102,509,227 - 102,509,397RGDRGSC3.4
RGSC_v3.114102,528,439 - 102,528,608RGD
Celera1494,880,114 - 94,880,283UniSTS
RH 3.4 Map14758.0RGD
RH 3.4 Map14758.0UniSTS
RH 2.0 Map14823.7RGD
SHRSP x BN Map1466.2099RGD
FHH x ACI Map1475.96RGD
Cytogenetic Map14q22UniSTS
AW532630  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21495,929,010 - 95,929,192 (+)MAPPERmRatBN7.2
Rnor_6.014106,711,951 - 106,712,132NCBIRnor6.0
Rnor_5.014106,776,743 - 106,776,924UniSTSRnor5.0
RGSC_v3.414102,566,312 - 102,566,493UniSTSRGSC3.4
Celera1494,935,850 - 94,936,031UniSTS
RH 3.4 Map14751.4UniSTS
Cytogenetic Map14q22UniSTS
AU049356  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21495,810,482 - 95,810,637 (+)MAPPERmRatBN7.2
Rnor_6.014106,563,499 - 106,563,653NCBIRnor6.0
Rnor_5.014106,630,158 - 106,630,312UniSTSRnor5.0
RGSC_v3.414102,441,095 - 102,441,249UniSTSRGSC3.4
Celera1494,813,901 - 94,814,055UniSTS
Cytogenetic Map14q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001127537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC161962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000092168   ⟹   ENSRNOP00000070201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1495,646,181 - 95,977,113 (+)Ensembl
Rnor_6.0 Ensembl14106,393,959 - 106,759,505 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099293   ⟹   ENSRNOP00000076430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1495,646,237 - 95,967,975 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101695   ⟹   ENSRNOP00000078004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1495,646,038 - 95,977,113 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107912   ⟹   ENSRNOP00000090509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1495,646,237 - 95,969,061 (+)Ensembl
RefSeq Acc Id: NM_001127537   ⟹   NP_001121009
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,544 - 100,178,391 (+)NCBI
mRatBN7.21495,646,237 - 95,977,119 (+)NCBI
Rnor_6.014106,393,959 - 106,759,511 (+)NCBI
Rnor_5.014106,464,351 - 106,823,523 (+)NCBI
RGSC_v3.414102,274,144 - 102,612,376 (+)RGD
Celera1494,655,473 - 94,975,636 (+)RGD
Sequence:
RefSeq Acc Id: XM_039092074   ⟹   XP_038948002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,463 - 100,178,392 (+)NCBI
mRatBN7.21495,645,955 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092075   ⟹   XP_038948003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,526 - 100,178,392 (+)NCBI
mRatBN7.21495,645,955 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092076   ⟹   XP_038948004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,524 - 100,178,392 (+)NCBI
mRatBN7.21495,645,955 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092078   ⟹   XP_038948006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,463 - 100,178,392 (+)NCBI
mRatBN7.21495,646,085 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092081   ⟹   XP_038948009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,520 - 100,178,392 (+)NCBI
mRatBN7.21495,645,955 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092085   ⟹   XP_038948013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,463 - 100,034,001 (+)NCBI
mRatBN7.21495,646,074 - 95,832,707 (+)NCBI
RefSeq Acc Id: XM_063273240   ⟹   XP_063129310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,524 - 100,178,392 (+)NCBI
RefSeq Acc Id: XM_063273241   ⟹   XP_063129311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,524 - 100,178,392 (+)NCBI
RefSeq Acc Id: XM_063273242   ⟹   XP_063129312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,524 - 100,178,392 (+)NCBI
RefSeq Acc Id: XM_063273243   ⟹   XP_063129313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,905,932 - 100,178,392 (+)NCBI
RefSeq Acc Id: XM_063273244   ⟹   XP_063129314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,463 - 100,178,392 (+)NCBI
RefSeq Acc Id: XM_063273245   ⟹   XP_063129315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,463 - 100,168,726 (+)NCBI
RefSeq Acc Id: XM_063273246   ⟹   XP_063129316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,516 - 100,178,392 (+)NCBI
RefSeq Acc Id: XM_063273247   ⟹   XP_063129317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,463 - 100,137,001 (+)NCBI
RefSeq Acc Id: XM_063273248   ⟹   XP_063129318
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,531 - 100,178,392 (+)NCBI
RefSeq Acc Id: XM_063273249   ⟹   XP_063129319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,463 - 100,137,001 (+)NCBI
RefSeq Acc Id: XM_063273250   ⟹   XP_063129320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,528 - 100,034,000 (+)NCBI
RefSeq Acc Id: XR_010057368
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,463 - 100,169,979 (+)NCBI
RefSeq Acc Id: XR_010057369
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,463 - 100,178,392 (+)NCBI
RefSeq Acc Id: XR_010057370
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,847,463 - 100,169,979 (+)NCBI
RefSeq Acc Id: NP_001121009   ⟸   NM_001127537
- UniProtKB: B1WC10 (UniProtKB/Swiss-Prot),   A0A0G2JXB0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070201   ⟸   ENSRNOT00000092168
RefSeq Acc Id: XP_038948004   ⟸   XM_039092076
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JXB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948002   ⟸   XM_039092074
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948003   ⟸   XM_039092075
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JXB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948009   ⟸   XM_039092081
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JXB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948013   ⟸   XM_039092085
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038948006   ⟸   XM_039092078
- Peptide Label: isoform X4
- UniProtKB: A0A8I5Y2A3 (UniProtKB/TrEMBL),   A0A0G2JXB0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000076430   ⟸   ENSRNOT00000099293
Ensembl Acc Id: ENSRNOP00000078004   ⟸   ENSRNOT00000101695
Ensembl Acc Id: ENSRNOP00000090509   ⟸   ENSRNOT00000107912
RefSeq Acc Id: XP_063129314   ⟸   XM_063273244
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063129315   ⟸   XM_063273245
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063129317   ⟸   XM_063273247
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063129319   ⟸   XM_063273249
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063129316   ⟸   XM_063273246
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063129312   ⟸   XM_063273242
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063129310   ⟸   XM_063273240
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063129311   ⟸   XM_063273241
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063129320   ⟸   XM_063273250
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063129318   ⟸   XM_063273248
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063129313   ⟸   XM_063273243
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WC10-F1-model_v2 AlphaFold B1WC10 1-726 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309501 AgrOrtholog
BioCyc Gene G2FUF-14827 BioCyc
Ensembl Genes ENSRNOG00000054331 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000092168.2 UniProtKB/TrEMBL
  ENSRNOT00000099293.1 UniProtKB/TrEMBL
  ENSRNOT00000101695.1 UniProtKB/TrEMBL
  ENSRNOT00000107912.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9027983 IMAGE-MGC_LOAD
InterPro Frtz UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:305552 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187766 IMAGE-MGC_LOAD
NCBI Gene 305552 ENTREZGENE
PANTHER PTHR13667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD REPEAT-CONTAINING AND PLANAR CELL POLARITY EFFECTOR PROTEIN FRITZ HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Frtz UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wdpcp PhenoGen
RatGTEx ENSRNOG00000054331 RatGTEx
Superfamily-SCOP Nucleoporin domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JXB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y2A3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y4G7_RAT UniProtKB/TrEMBL
  A0A8I6ABY1_RAT UniProtKB/TrEMBL
  B1WC10 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Wdpcp  WD repeat containing planar cell polarity effector  RGD1309501  hypothetical LOC305552  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1309501  hypothetical LOC305552   RGD1309501_predicted  hypothetical LOC305552 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309501_predicted  hypothetical LOC305552 (predicted)  LOC305552_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305552_predicted  hypothetical LOC305552 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL