Scara3 (scavenger receptor class A, member 3) - Rat Genome Database

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Gene: Scara3 (scavenger receptor class A, member 3) Rattus norvegicus
Analyze
Symbol: Scara3
Name: scavenger receptor class A, member 3
RGD ID: 1309269
Description: Predicted to be an extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in extracellular matrix organization. Predicted to be located in endoplasmic reticulum. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Orthologous to human SCARA3 (scavenger receptor class A member 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC364405; scavenger receptor class A member 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81544,315,422 - 44,348,416 (-)NCBIGRCr8
mRatBN7.21540,139,873 - 40,172,866 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1540,140,161 - 40,172,894 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1542,003,656 - 42,038,124 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01543,153,858 - 43,188,322 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01541,600,182 - 41,633,171 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01542,605,505 - 42,638,409 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1542,605,473 - 42,638,392 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01548,953,960 - 48,986,864 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41545,344,539 - 45,377,576 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11545,360,319 - 45,393,691 (-)NCBI
Celera1539,811,744 - 39,844,508 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
amphetamine  (EXP)
arsenous acid  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
butan-1-ol  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cerium trichloride  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (EXP)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fipronil  (EXP)
folic acid  (ISO)
furan  (EXP)
glycidol  (EXP)
hydroquinone  (ISO)
indometacin  (ISO)
inulin  (ISO)
isobutanol  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lanthanum trichloride  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-nitrosodiethylamine  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
temozolomide  (ISO)
testosterone  (EXP,ISO)
thapsigargin  (ISO)
titanium dioxide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25204797  


Genomics

Comparative Map Data
Scara3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81544,315,422 - 44,348,416 (-)NCBIGRCr8
mRatBN7.21540,139,873 - 40,172,866 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1540,140,161 - 40,172,894 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1542,003,656 - 42,038,124 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01543,153,858 - 43,188,322 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01541,600,182 - 41,633,171 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01542,605,505 - 42,638,409 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1542,605,473 - 42,638,392 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01548,953,960 - 48,986,864 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41545,344,539 - 45,377,576 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11545,360,319 - 45,393,691 (-)NCBI
Celera1539,811,744 - 39,844,508 (-)NCBICelera
Cytogenetic Map15p12NCBI
SCARA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38827,633,463 - 27,734,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl827,633,868 - 27,676,776 (+)EnsemblGRCh38hg38GRCh38
GRCh37827,491,419 - 27,534,288 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36827,547,496 - 27,590,205 (+)NCBINCBI36Build 36hg18NCBI36
Build 34827,547,495 - 27,590,205NCBI
Celera826,451,665 - 26,494,373 (+)NCBICelera
Cytogenetic Map8p21.1NCBI
HuRef826,036,621 - 26,079,326 (+)NCBIHuRef
CHM1_1827,693,466 - 27,736,166 (+)NCBICHM1_1
T2T-CHM13v2.0827,910,729 - 28,013,971 (+)NCBIT2T-CHM13v2.0
Scara3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391466,156,844 - 66,191,427 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1466,156,843 - 66,191,384 (-)EnsemblGRCm39 Ensembl
GRCm381465,919,394 - 65,953,978 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1465,919,394 - 65,953,935 (-)EnsemblGRCm38mm10GRCm38
MGSCv371466,538,232 - 66,572,581 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361464,873,505 - 64,907,854 (-)NCBIMGSCv36mm8
Celera1463,672,278 - 63,706,586 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.36NCBI
Scara3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540350,185,037 - 50,226,030 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540350,185,857 - 50,223,340 (+)NCBIChiLan1.0ChiLan1.0
SCARA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2746,164,427 - 46,242,582 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1821,878,654 - 21,975,188 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0826,903,924 - 27,032,048 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1824,106,075 - 24,148,465 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl824,106,075 - 24,148,465 (+)Ensemblpanpan1.1panPan2
SCARA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12529,891,099 - 29,966,846 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2529,917,335 - 29,968,076 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2530,504,063 - 30,553,337 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02530,107,667 - 30,156,993 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2530,107,681 - 30,157,514 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12530,037,969 - 30,087,201 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02529,918,813 - 29,968,236 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02530,085,179 - 30,134,524 (-)NCBIUU_Cfam_GSD_1.0
Scara3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049438,025,043 - 8,050,941 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936675535,210 - 561,119 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936675541,829 - 561,110 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCARA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1411,367,427 - 11,410,978 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11411,367,402 - 11,403,173 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21412,546,504 - 12,582,044 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SCARA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1825,741,988 - 25,779,224 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl825,742,127 - 25,782,247 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605216,360,511 - 16,399,973 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scara3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475822,454,213 - 22,488,452 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475822,454,181 - 22,488,431 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Scara3
208 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:185
Count of miRNA genes:115
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000022020
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat

Markers in Region
D15Rat144  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81544,334,993 - 44,335,334 (+)Marker Load Pipeline
mRatBN7.21540,159,442 - 40,159,783 (+)MAPPERmRatBN7.2
Rnor_6.01542,624,987 - 42,625,327NCBIRnor6.0
Rnor_5.01548,967,041 - 48,967,382NCBIRnor5.0
RGSC_v3.41545,364,154 - 45,364,494UniSTSRGSC3.4
Celera1539,831,086 - 39,831,426UniSTS
SHRSP x BN Map1533.5499RGD
SHRSP x BN Map1533.5499UniSTS
Cytogenetic Map15p12UniSTS
D15Rat147  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81544,334,993 - 44,335,331 (+)Marker Load Pipeline
mRatBN7.21540,159,442 - 40,159,780 (+)MAPPERmRatBN7.2
Rnor_6.01542,624,987 - 42,625,324NCBIRnor6.0
Rnor_5.01548,967,044 - 48,967,382NCBIRnor5.0
RGSC_v3.41545,364,154 - 45,364,491UniSTSRGSC3.4
RGSC_v3.11545,379,921 - 45,380,573RGD
Celera1539,831,086 - 39,831,423UniSTS
SHRSP x BN Map1534.6299UniSTS
SHRSP x BN Map1534.6299RGD
Cytogenetic Map15p12UniSTS
AU046859  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21540,151,265 - 40,151,526 (+)MAPPERmRatBN7.2
Rnor_6.01542,616,896 - 42,617,156NCBIRnor6.0
Rnor_5.01548,975,213 - 48,975,473UniSTSRnor5.0
RGSC_v3.41545,355,930 - 45,356,190UniSTSRGSC3.4
Celera1539,823,098 - 39,823,358UniSTS
Cytogenetic Map15p12UniSTS
RH137171  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21540,139,754 - 40,139,940 (+)MAPPERmRatBN7.2
Rnor_6.01542,605,387 - 42,605,572NCBIRnor6.0
Rnor_5.01548,986,797 - 48,986,982UniSTSRnor5.0
RGSC_v3.41545,344,421 - 45,344,606UniSTSRGSC3.4
Celera1539,811,626 - 39,811,811UniSTS
Cytogenetic Map15p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 80 79 48 25 48 6 207 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000022020   ⟹   ENSRNOP00000022015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1540,140,161 - 40,172,893 (-)Ensembl
Rnor_6.0 Ensembl1542,605,473 - 42,638,392 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102202   ⟹   ENSRNOP00000083244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1540,140,161 - 40,158,136 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106373   ⟹   ENSRNOP00000080574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1540,140,161 - 40,172,894 (-)Ensembl
RefSeq Acc Id: NM_001108870   ⟹   NP_001102340
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81544,315,422 - 44,348,416 (-)NCBI
mRatBN7.21540,139,873 - 40,172,866 (-)NCBI
Rnor_6.01542,605,505 - 42,638,409 (-)NCBI
Rnor_5.01548,953,960 - 48,986,864 (+)NCBI
RGSC_v3.41545,344,539 - 45,377,576 (-)RGD
Celera1539,811,744 - 39,844,508 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102340 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL85368 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022015.4
  ENSRNOP00000080574.1
  ENSRNOP00000083244.1
RefSeq Acc Id: NP_001102340   ⟸   NM_001108870
- UniProtKB: D3ZPA7 (UniProtKB/TrEMBL),   A6K6K8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022015   ⟸   ENSRNOT00000022020
Ensembl Acc Id: ENSRNOP00000080574   ⟸   ENSRNOT00000106373
Ensembl Acc Id: ENSRNOP00000083244   ⟸   ENSRNOT00000102202

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZPA7-F1-model_v2 AlphaFold D3ZPA7 1-606 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699750
Promoter ID:EPDNEW_R10274
Type:initiation region
Name:Scara3_1
Description:scavenger receptor class A, member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01542,638,436 - 42,638,496EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309269 AgrOrtholog
BioCyc Gene G2FUF-13341 BioCyc
Ensembl Genes ENSRNOG00000016177 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022020.7 UniProtKB/TrEMBL
  ENSRNOT00000102202.1 UniProtKB/TrEMBL
  ENSRNOT00000106373.1 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  Oxidative_Scav/Glycosyltrans UniProtKB/TrEMBL
KEGG Report rno:364405 UniProtKB/TrEMBL
NCBI Gene 364405 ENTREZGENE
PANTHER PHOSPHOLIPASE C-BETA-2-RELATED UniProtKB/TrEMBL
  ZF-RING_7 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
PhenoGen Scara3 PhenoGen
RatGTEx ENSRNOG00000016177 RatGTEx
UniProt A0A8I5ZQ02_RAT UniProtKB/TrEMBL
  A0A8I5ZWL2_RAT UniProtKB/TrEMBL
  A6K6K8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPA7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Scara3  scavenger receptor class A, member 3   Scara3_predicted  scavenger receptor class A, member 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Scara3_predicted  scavenger receptor class A, member 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED