Traf3ip1 (TRAF3 interacting protein 1)

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Gene: Traf3ip1 (TRAF3 interacting protein 1) Rattus norvegicus

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Symbol:

Traf3ip1

Name:

TRAF3 interacting protein 1

RGD ID:

1309252

Description:

Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including cilium organization; negative regulation of macromolecule metabolic process; and regulation of microtubule cytoskeleton organization. Predicted to act upstream of or within several processes, including embryonic organ development; negative regulation of interferon-beta production; and post-anal tail morphogenesis. Predicted to be located in several cellular components, including centrosome; ciliary base; and ciliary tip. Predicted to be part of intraciliary transport particle B. Predicted to be active in axoneme and ciliary basal body. Human ortholog(s) of this gene implicated in Senior-Loken syndrome. Orthologous to human TRAF3IP1 (TRAF3 interacting protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

intraflagellar transport protein 54 homolog; LOC363286; microtubule-interacting protein associated with TRAF3; MIP-T3; TNF receptor-associated factor 3 interacting protein 1; TRAF3-interacting protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TRAF3IP1 (TRAF3 interacting protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Traf3ip1 (TRAF3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Traf3ip1 (TRAF3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TRAF3IP1 (TRAF3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TRAF3IP1 (TRAF3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Traf3ip1 (TRAF3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TRAF3IP1 (TRAF3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TRAF3IP1 (TRAF3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Traf3ip1 (TRAF3 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TRAF3IP1 (TRAF3 interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Traf3ip1 (TRAF3 interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	traf3ip1 (TNF receptor-associated factor 3 interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	dyf-11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	IFT54	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	traf3ip1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	99,521,176 - 99,557,966 (+)	NCBI		GRCr8
mRatBN7.2	9	92,073,622 - 92,110,427 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	92,073,640 - 92,108,977 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	100,500,393 - 100,535,733 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	105,636,149 - 105,671,490 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	103,999,893 - 104,035,307 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	98,621,499 - 98,658,223 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	98,621,506 - 98,656,901 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	98,297,553 - 98,334,249 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	90,711,965 - 90,747,306 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	90,916,733 - 90,952,074 (+)	NCBI
Celera	9	89,614,682 - 89,650,077 (+)	NCBI		Celera
Cytogenetic Map	9	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

asphyxiating thoracic dystrophy (ISO)

Bethlem Myopathy 1A (ISO)

chromosome 2q37 deletion syndrome (ISO)

D-2-hydroxyglutaric aciduria 1 (ISO)

Ellis-Van Creveld syndrome (ISO)

genetic disease (ISO)

hereditary spastic paraplegia 30 (ISO)

intellectual disability (ISO)

Senior-Loken Syndrome 9 (ISO)

short-rib thoracic dysplasia 6 with or without polydactyly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

copper(II) sulfate (ISO)

crotonaldehyde (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dextran sulfate (ISO)

dibutyl phthalate (ISO)

ethyl methanesulfonate (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

methyl methanesulfonate (ISO)

p-menthan-3-ol (ISO)

paracetamol (ISO)

succimer (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell projection organization (IEA)

cilium assembly (IBA,ISO)

defense response to virus (ISO)

embryonic camera-type eye development (ISO)

embryonic digit morphogenesis (ISO)

embryonic heart tube development (ISO)

intraciliary transport (IBA)

kidney development (IEA,ISO,ISS)

morphogenesis of a polarized epithelium (IEA,ISO,ISS)

negative regulation of defense response to virus (IEA,ISO)

negative regulation of interferon-beta production (ISO)

negative regulation of protein phosphorylation (ISO)

negative regulation of protein-containing complex assembly (IEA,ISO)

negative regulation of smoothened signaling pathway (ISO)

negative regulation of type I interferon production (IEA,ISO)

neural tube patterning (ISO)

post-anal tail morphogenesis (ISO)

regulation of microtubule cytoskeleton organization (IBA,IEA,ISO,ISS)

Cellular Component

axoneme (IBA,ISO)

cell projection (IEA)

centrosome (ISO)

ciliary basal body (IBA,ISO)

ciliary base (IEA,ISO,ISS)

ciliary tip (IEA,ISO,ISS)

ciliary transition zone (IEA,ISO,ISS)

cilium (ISO)

cytoplasm (IEA)

cytoskeleton (IEA)

intraciliary transport particle B (IBA,IEA,ISO,ISS)

Molecular Function

microtubule binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19253336	PMID:21945076	PMID:22079989	PMID:24596149	PMID:25443296	PMID:26487268

Genomics

Comparative Map Data

Traf3ip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	99,521,176 - 99,557,966 (+)	NCBI		GRCr8
mRatBN7.2	9	92,073,622 - 92,110,427 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	92,073,640 - 92,108,977 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	100,500,393 - 100,535,733 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	105,636,149 - 105,671,490 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	103,999,893 - 104,035,307 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	98,621,499 - 98,658,223 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	98,621,506 - 98,656,901 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	98,297,553 - 98,334,249 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	90,711,965 - 90,747,306 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	90,916,733 - 90,952,074 (+)	NCBI
Celera	9	89,614,682 - 89,650,077 (+)	NCBI		Celera
Cytogenetic Map	9	q36	NCBI

TRAF3IP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	238,320,518 - 238,400,900 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	238,320,441 - 238,400,897 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	239,229,159 - 239,309,541 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	238,893,821 - 238,972,536 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	239,011,081 - 239,089,796	NCBI
Celera	2	232,941,689 - 233,022,043 (+)	NCBI		Celera
Cytogenetic Map	2	q37.3	NCBI
HuRef	2	231,020,156 - 231,100,657 (+)	NCBI		HuRef
CHM1_1	2	239,234,988 - 239,315,765 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	238,810,296 - 238,891,033 (+)	NCBI		T2T-CHM13v2.0

Traf3ip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	91,422,311 - 91,457,029 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	91,422,369 - 91,457,029 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	91,494,590 - 91,529,307 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	91,494,647 - 91,529,307 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	93,391,245 - 93,425,884 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	93,325,083 - 93,358,670 (+)	NCBI		MGSCv36	mm8
Celera	1	94,431,301 - 94,465,946 (+)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	46.16	NCBI

Traf3ip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955542	2,265,901 - 2,301,215 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955542	2,264,472 - 2,301,083 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRAF3IP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	140,959,711 - 141,041,636 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	140,974,690 - 141,056,604 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	125,558,537 - 125,637,733 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	244,404,777 - 244,481,785 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	244,405,992 - 244,481,785 (+)	Ensembl	panpan1.1		panPan2

TRAF3IP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	48,782,448 - 48,836,993 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	48,782,463 - 48,834,374 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	49,273,550 - 49,330,836 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	49,163,880 - 49,221,292 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	49,163,655 - 49,222,444 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	49,038,924 - 49,096,303 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	48,827,403 - 48,885,058 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	49,059,869 - 49,117,192 (+)	NCBI		UU_Cfam_GSD_1.0

Traf3ip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	190,765,080 - 190,824,082 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	115,479 - 174,694 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	115,614 - 174,641 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRAF3IP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	137,863,609 - 137,912,477 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	137,863,612 - 137,912,325 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	152,435,379 - 152,441,803 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRAF3IP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	124,348,763 - 124,428,522 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	124,348,916 - 124,429,716 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	74,995,510 - 75,072,036 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Traf3ip1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624847	3,424,365 - 3,472,075 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624847	3,424,388 - 3,469,708 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Traf3ip1
221 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	72
Count of miRNA genes:	65
Interacting mature miRNAs:	71
Transcripts:	ENSRNOT00000056612
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	79271511	102910209	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	75712843	111552878	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	77813894	101597663	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	77813894	111552878	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC141966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056612 ⟹ ENSRNOP00000053451

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	92,073,640 - 92,108,977 (+)	Ensembl
Rnor_6.0 Ensembl	9	98,621,506 - 98,656,843 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081992 ⟹ ENSRNOP00000069939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	92,073,640 - 92,108,977 (+)	Ensembl
Rnor_6.0 Ensembl	9	98,621,610 - 98,656,901 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100401 ⟹ ENSRNOP00000085077

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	92,073,640 - 92,108,977 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104108 ⟹ ENSRNOP00000076695

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	92,073,640 - 92,108,977 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113396 ⟹ ENSRNOP00000076805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	92,073,640 - 92,108,977 (+)	Ensembl

RefSeq Acc Id:

NM_001012204 ⟹ NP_001012204

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	99,521,176 - 99,556,514 (+)	NCBI
mRatBN7.2	9	92,073,640 - 92,108,978 (+)	NCBI
Rnor_6.0	9	98,621,506 - 98,656,844 (+)	NCBI
Rnor_5.0	9	98,297,553 - 98,334,249 (+)	NCBI
RGSC_v3.4	9	90,711,965 - 90,747,306 (+)	RGD
Celera	9	89,614,682 - 89,650,077 (+)	RGD

Sequence:

show sequence

GCTAGCAGCGGTGCACTGTGGGATGGGAGACCGGCGCGCCGGGACGGCGGGCATCTCGAGGCAC
CGGGCAGAGGCGCGGTGCGCGAGGAGAGGCGCGAGCGGTCGCGGGCGGCAGCGCCATGAACGCG
GCAGTGGTGCGGCGGACGCAGGAGGCTCTGGGCAAGGTTATCCGGAGGCCGCCGCTCACCGAGA
AGCTGCTCAACAAGCCACCGTTCCGCTACCTGCACGACATCATCACTGAGGTGATTAGGATAAC
TGGCTTCATGAAGGGCCTCTACACAGATGCTGAGATGAAGTCAGATAACGTCAAGGATAAAGAT
GCAAAGATTAGCTTCTTACAGAAGGCCATAGATGTGGTCATGATGGTGTCAGGAGAACCCTTGG
CAGCAAAACCAGCTAGAATTGTGGCCGGGCACGAACCTGAAAGAACCAATGAGCTGCTTCAGTT
GATTGGCAAGTGCTGCCTCAGCAAGCTCTCCAGTGATGAGGCTGTGAAGAGAGTCTTAGCTGGG
GAGAAGGGGGACTCGAGAGGTCGAGTCCTGAGGACGTCGAAAGCACAAGAGCCCGACAACAAGA
GTGTGAAGGAGGAAGAGTCCAGAACACAGAAAGAGGAGAAACGAAGCTCTGAGGTGAAGGAGAG
AAGCTCAAGTGCAGAGCACAAACAGAAGGAGGAACTAAAGGAAGACAGCAAGCCTCGGGAGAAG
GAGAGAGACAAGGAGAAGGCAAAGGAGGCTGACAGAGACCGACACAGAGAACCCGACAGGGACA
GAAACAGAGACGGAGAGCGAGAGAAAGCCAGAGCACGGGCCAAGCAGGACAGGGACAGAAACAA
CAAAGATCGGGACAGAGAGACTGAAAGGGACAGAGATAGGGACAGGAGGAGTGACGGTGGGAAA
GAAAAAGAGAGGCAGAAGGACCGAGACCGTGACAAGGGAAAAGACCGGGAACGGCGGAAATCGA
AGAATGGAGAACATACCCGGGATCCTGACAGGGAGAAGAGCAGAGATGCAGACAAGTCAGAGAA
AAAGGCTGACATTTCTGTAGGAGCATCCAAGTCTTCAACGTTAAAAGCATCAAAACGGCGATCC
AAGAATTCACTGGAAGGAAGGAAAGAGGATAATATTTCAGCTAAGATTTTAGACTCCATAGTGT
CGGGACTAAATGACGAACCAGATCAGGAAACGACAGCTCCAGAAATAGATGATAACTCAGCTAG
TCTGTGGCGGGAGAACGCTGAGCCAGAGCCAGCAGTAAAGCAGAAAGGTGACTCTCCCAGCGAC
GCAGAAGGAGAAGCTGTACCTACTAGCCAAGATAAGCTGGAGGTGACAGAGAATGCAGAAGTCT
CAAATGAGCTTCCCTCCAGCCTCAGAAGAATACCTCGGCCTGGGAGTGCACGGCCAGCACCTCC
CAGGGTCAAACGACAAGAGAGCACAGAAACACTGGCAGGGGACAGGTCGGGAAGTGGTAAGACG
GTCTCCACTGTGATCATCGACTCCCAGAACTCCGACAATGAGGACGACGAGCAGTTTGTGGTGG
AAGCTGCCCCGCAGCTGTCGGAAATCGCAGAAATTGAAATGGTGCCATCAGGGGACCTGGAGGA
TGAGGAGAAGCATGGTGGGCTCGTAAAAAAGATCTTGGAGACGAAGAAGGATTATGAGAAACTG
CAGCAGTCTCCCAAGCCTGGTGAGAAGGAGAGATCCCTTATCTTCGAGTCAGCATGGAAGAAGG
AGAAGGACATCGTTTCCAAGGAGATAGAGAAGCTCCGTGTGTCCATCCAGACCCTGTGTAAGAG
CGCACTTCCCCTGGGAAAGATCATGGACTACATCCAGGAGGATGTGGATGCCATGCAGAATGAG
CTGCAGCTGTGGCACAGCGAGAACCGGCAGCATGCCGAGGCCCTGAGCAAGGAGCAGAGCATCA
CAGACAGTGCGGTGGAGCCCCTGAAGGCTGAGCTGTCTGAGCTGGAACAACAGATCAAAGACCA
GCAGGACAAGATCTGTGCGGTGAAGGCCAACATCCTGAAGAATGAGGAGAAGATCCAGAAAATG
GTGCACAGTATCAACCTGTCATCACGAAGATGAGTGGCCAGCACTGCAGAGATGGAACCATCCT
CCTCATGATGGACAAGGGGGCAGGAACCGCCCCACTGAGCCCTGTCTGCTAAGACGATGGCCTG
CTGTGCCCTGACCCAGCTAAGGTCAGAGCTTTCAGTTTAGGCACTAAACTATTAAAAGGCTGTG
TTTCCCTCCTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006245435 ⟹ XP_006245497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	99,521,286 - 99,557,966 (+)	NCBI
mRatBN7.2	9	92,073,624 - 92,110,427 (+)	NCBI
Rnor_6.0	9	98,621,501 - 98,658,223 (+)	NCBI
Rnor_5.0	9	98,297,553 - 98,334,249 (+)	NCBI

Sequence:

show sequence

CAGTGGCTAGCAGCGGTGCACTGTGGGATGGGAGACCGGCGCGCCGGGACGGCGGGCATCTCGA
GGCACCGGGCAGAGGCGCGGTGCGCGAGGAGAGGCGCGAGCGGTCGCGGGCGGCAGCGCCATGA
ACGCGGCAGTGGTGCGGCGGACGCAGGAGGCTCTGGGCAAGGTTATCCGGAGGCCGCCGCTCAC
CGAGAAGCTGCTCAACAAGCCACCGTTCCGCTACCTGCACGACATCATCACTGAGGTGATTAGG
ATAACTGGCTTCATGAAGGGCCTCTACACAGATGCTGAGATGAAGTCAGATAACGTCAAGGATA
AAGATGCAAAGATTAGCTTCTTACAGAAGGCCATAGATGTGGTCATGATGGTGTCAGGAGAACC
CTTGGCAGCAAAACCAGCTAGAATTGTGGCCGGGCACGAACCTGAAAGAACCAATGAGCTGCTT
CAGTTGATTGGCAAGTGCTGCCTCAGCAAGCTCTCCAGTGATGAGGCTGTGAAGAGAGTCTTAG
CTGGGGAGAAGGGGGACTCGAGAGGTCGAGTCCTGAGGACGTCGAAAGCACAAGAGCCCGACAA
CAAGAGTGTGAAGGAGGAAGAGTCCAGAACACAGAAAGAGGAGAAACGAAGCTCTGAGGTGAAG
GAGAGAAGCTCAAGTGCAGAGCACAAACAGAAGGAGGAACTAAAGGAAGACAGCAAGCCTCGGG
AGAAGGAGAGAGACAAGGAGAAGGCAAAGGAGGCTGACAGAGACCGACACAGAGAACCCGACAG
GGACAGAAACAGAGACGGAGAGCGAGAGAAAGCCAGAGCACGGGCCAAGCAGGACAGGGACAGA
AACAACAAAGATCGGGACAGAGAGACTGAAAGGGACAGAGATAGGGACAGGAGGAGTGACGGTG
GGAAAGAAAAAGAGAGGCAGAAGGACCGAGACCGTGACAAGGGAAAAGACCGGGAACGGCGGAA
ATCGAAGAATGGAGAACATACCCGGGATCCTGACAGGGAGAAGAGCAGAGATGCAGACAAGTCA
GAGAAAAAGGCTGACATTTCTGTAGGAGCATCCAAGTCTTCAACGTTAAAAGCATCAAAACGGC
GATCCAAGAATTCACTGGAAGATGATAACTCAGCTAGTCTGTGGCGGGAGAACGCTGAGCCAGA
GCCAGCAGTAAAGCAGAAAGGTGACTCTCCCAGCGACGCAGAAGGAGAAGCTGTACCTACTAGC
CAAGATAAGCTGGAGGTGACAGAGAATGCAGAAGTCTCAAATGAGCTTCCCTCCAGCCTCAGAA
GAATACCTCGGCCTGGGAGTGCACGGCCAGCACCTCCCAGGGTCAAACGACAAGAGAGCACAGA
AACACTGGCAGGGGACAGGTCGGGAAGTGGTAAGACGGTCTCCACTGTGATCATCGACTCCCAG
AACTCCGACAATGAGGACGACGAGCAGTTTGTGGTGGAAGCTGCCCCGCAGCTGTCGGAAATCG
CAGAAATTGAAATGGTGCCATCAGGGGACCTGGAGGATGAGGAGAAGCATGGTGGGCTCGTAAA
AAAGATCTTGGAGACGAAGAAGGATTATGAGAAACTGCAGCAGTCTCCCAAGCCTGGTGAGAAG
GAGAGATCCCTTATCTTCGAGTCAGCATGGAAGAAGGAGAAGGACATCGTTTCCAAGGAGATAG
AGAAGCTCCGTGTGTCCATCCAGACCCTGTGTAAGAGCGCACTTCCCCTGGGAAAGATCATGGA
CTACATCCAGGAGGATGTGGATGCCATGCAGAATGAGCTGCAGCTGTGGCACAGCGAGAACCGG
CAGCATGCCGAGGCCCTGAGCAAGGAGCAGAGCATCACAGACAGTGCGGTGGAGCCCCTGAAGG
CTGAGCTGTCTGAGCTGGAACAACAGATCAAAGACCAGCAGGACAAGATCTGTGCGGTGAAGGC
CAACATCCTGAAGAATGAGGAGAAGATCCAGAAAATGGTGCACAGTATCAACCTGTCATCACGA
AGATGAGTGGCCAGCACTGCAGAGATGGAACCATCCTCCTCATGATGGACAAGGGGGCAGGAAC
CGCCCCACTGAGCCCTGTCTGCTAAGACGATGGCCTGCTGTGCCCTGACCCAGCTAAGGTCAGA
GCTTTCAGTTTAGGCACTAAACTATTAAAAGGCTGTGTTTCCCTCCTTCCAGCTGCGGTACTCA
CTGCTTACAAATAGCCCCCAGCTCGCCTTTGTGGGAGGGCTTCTTTCTTTGTTTGTTTGTTTTT
TTTTTGTTTGTTTGTTTTGGTTTTTTTTTTTTTTTTTTTTGCAAATACGTTTTTTCTGCTGCAG
CCTGTTTGACCCTATACCCTAGTTTTAGCAGGTAAGTTGTCTCATCCTACTGGGCAAACAGCAG
GCTTTTGTTTCTGCTTTTGTGTTTCCCAGAAGGACTTCATACTGGCATGGAGCAAAGGACAGCT
ATGTATTTTTGGTGGGTATTTTATAAATAGAATGAGGCCTAAAATGTTTAAATTGCCATTTTAT
TTCTACCTGAAGGGCGTCATTTCAGCCCATGTCCTTGTAAGGTGCCTGTCGTCTGTGTGGGGTT
GCTGCCCTCTTACTGCACAGGCTTCTTTCTGCAGCCTCTGCAGATTTGCTGTCTGCATTTCTAT
CCCTTAACGCTCATAGGCTGAGAAGGAGGATTTAGCATAGCCTCTATGGGCATTGTGTGATGGG
AACCTGTCACAGGCTACCACTGAGGCTTTCTGCAGCCCCCAGCAGCATCCAGCTCACTCCTGAT
GGATGAGCAGTCCCCTAGGCCACCTTAAGAGGACATTGTCGCATGAAGAGGTAGCATGGTCCTT
CTCCGTGAAGGCGTGCTCCGAGAGTTGGGAGTGAGGAGAAACTGTGAGGAAGAGAGTACACCAA
TTTACAATTTGTGTTTATTTTCCTTTTTTAAAGACCCTTTTTTTTTAAAGTAAAGTTGTTTTTT
TTTTAAATGGTTTTTACTCAGTTTTTCACCTTCTGTAAATACTTATTAAGGTCTTGAATTATCG
TATAAAGGATCTCTCTGTGTTTGGAGATGTTCTTACTGGCATAAGGTCTGAGGTGTTCCTTACG
TTTCTGGGTATTTATTATGTACACTACGTCGAACCCTGGGAAGTGTGAAGACTGCCTTAGCACG
GTTTTGTGCCTCAAGGCTTAGCACAGGTGGCACAGCCAGTGTTTCTCAGTTAGTGGAAGGCAGC
AGTCCAGTTCTCAGGGGGGCCTGGACATGGTGGAGATGTCGCTCAGCCTCTGAGTCTCTCCTGT
CTGAAGCATACCACCCCACCCTGCCAAACAGATGCTTCCAAACAGTTTAGGAGAGGGAAGGATT
GCTTGCCAACCAGCCTCTGTATGTTCATGATCTCTTTTCGACTAAATTAAAAAACTTAGCCATA
ACCCTAAGTGGACCCCATATATACCAAGTTAATATATATACATGTACATGTATATATATCCTTT
TATGAATTTGTATATATGAATAGAATTTTTATGTTGAGAAAATTACATACATTGTATGTGAGTA
AAATTTTATATGCTGTAGTCTA

hide sequence

RefSeq Acc Id:

XM_006245436 ⟹ XP_006245498

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	99,521,286 - 99,557,966 (+)	NCBI
mRatBN7.2	9	92,073,625 - 92,110,427 (+)	NCBI
Rnor_6.0	9	98,621,502 - 98,658,223 (+)	NCBI
Rnor_5.0	9	98,297,553 - 98,334,249 (+)	NCBI

Sequence:

show sequence

AGTGGCTAGCAGCGGTGCACTGTGGGATGGGAGACCGGCGCGCCGGGACGGCGGGCATCTCGAG
GCACCGGGCAGAGGCGCGGTGCGCGAGGAGAGGCGCGAGCGGTCGCGGGCGGCAGCGCCATGAA
CGCGGCAGTGGTGCGGCGGACGCAGGAGGCTCTGGGCAAGGTTATCCGGAGGCCGCCGCTCACC
GAGAAGCTGCTCAACAAGCCACCGTTCCGCTACCTGCACGACATCATCACTGAGGTGATTAGGA
TAACTGGCTTCATGAAGGGCCTCTACACAGATGCTGAGATGAAGTCAGATAACGTCAAGGATAA
AGATGCAAAGATTAGCTTCTTACAGAAGGCCATAGATGTGGTCATGATGGTGTCAGGAGAACCC
TTGGCAGCAAAACCAGCTAGAATTGTGGCCGGGCACGAACCTGAAAGAACCAATGAGCTGCTTC
AGTTGATTGGCAAGTGCTGCCTCAGCAAGCTCTCCAGTGATGAGGCTGTGAAGAGAGTCTTAGC
TGGGGAGAAGGGGGACTCGAGAGGTCGAGTCCTGAGGACGTCGAAAGCACAAGAGCCCGACAAC
AAGAGTGTGAAGGAGGAAGAGTCCAGAACACAGAAAGAGGAGAAACGAAGCTCTGAGGTGAAGG
AGAGAAGCTCAAGTGCAGAGCACAAACAGAAGGAGGAACTAAAGGAAGACAGCAAGCCTCGGGA
GAAGGAGAGAGACAAGGAGAAGGCAAAGGAGGCTGACAGAGACCGACACAGAGAACCCGACAGG
GACAGAAACAGAGACGGAGAGCGAGAGAAAGCCAGAGCACGGGCCAAGCAGGACAGGGACAGAA
ACAACAAAGATCGGGACAGAGAGACTGAAAGGGACAGAGATAGGGACAGGAGGAGTGACGGTGG
GAAAGAAAAAGAGAGGCAGAAGGACCGAGACCGTGACAAGGGAAAAGACCGGGAACGGCGGAAA
TCGAAGAATGGAGAACATACCCGGGATCCTGACAGGGAGAAGAGCAGAGATGCAGACAAGTCAG
AGAAAAAGGCTGACATTTCTGTAGGAGCATCCAAGTCTTCAACGTTAAAAGCATCAAAACGGCG
ATCCAAGAATTCACTGGAAGGTGACTCTCCCAGCGACGCAGAAGGAGAAGCTGTACCTACTAGC
CAAGATAAGCTGGAGGTGACAGAGAATGCAGAAGTCTCAAATGAGCTTCCCTCCAGCCTCAGAA
GAATACCTCGGCCTGGGAGTGCACGGCCAGCACCTCCCAGGGTCAAACGACAAGAGAGCACAGA
AACACTGGCAGGGGACAGGTCGGGAAGTGGTAAGACGGTCTCCACTGTGATCATCGACTCCCAG
AACTCCGACAATGAGGACGACGAGCAGTTTGTGGTGGAAGCTGCCCCGCAGCTGTCGGAAATCG
CAGAAATTGAAATGGTGCCATCAGGGGACCTGGAGGATGAGGAGAAGCATGGTGGGCTCGTAAA
AAAGATCTTGGAGACGAAGAAGGATTATGAGAAACTGCAGCAGTCTCCCAAGCCTGGTGAGAAG
GAGAGATCCCTTATCTTCGAGTCAGCATGGAAGAAGGAGAAGGACATCGTTTCCAAGGAGATAG
AGAAGCTCCGTGTGTCCATCCAGACCCTGTGTAAGAGCGCACTTCCCCTGGGAAAGATCATGGA
CTACATCCAGGAGGATGTGGATGCCATGCAGAATGAGCTGCAGCTGTGGCACAGCGAGAACCGG
CAGCATGCCGAGGCCCTGAGCAAGGAGCAGAGCATCACAGACAGTGCGGTGGAGCCCCTGAAGG
CTGAGCTGTCTGAGCTGGAACAACAGATCAAAGACCAGCAGGACAAGATCTGTGCGGTGAAGGC
CAACATCCTGAAGAATGAGGAGAAGATCCAGAAAATGGTGCACAGTATCAACCTGTCATCACGA
AGATGAGTGGCCAGCACTGCAGAGATGGAACCATCCTCCTCATGATGGACAAGGGGGCAGGAAC
CGCCCCACTGAGCCCTGTCTGCTAAGACGATGGCCTGCTGTGCCCTGACCCAGCTAAGGTCAGA
GCTTTCAGTTTAGGCACTAAACTATTAAAAGGCTGTGTTTCCCTCCTTCCAGCTGCGGTACTCA
CTGCTTACAAATAGCCCCCAGCTCGCCTTTGTGGGAGGGCTTCTTTCTTTGTTTGTTTGTTTTT
TTTTTGTTTGTTTGTTTTGGTTTTTTTTTTTTTTTTTTTTGCAAATACGTTTTTTCTGCTGCAG
CCTGTTTGACCCTATACCCTAGTTTTAGCAGGTAAGTTGTCTCATCCTACTGGGCAAACAGCAG
GCTTTTGTTTCTGCTTTTGTGTTTCCCAGAAGGACTTCATACTGGCATGGAGCAAAGGACAGCT
ATGTATTTTTGGTGGGTATTTTATAAATAGAATGAGGCCTAAAATGTTTAAATTGCCATTTTAT
TTCTACCTGAAGGGCGTCATTTCAGCCCATGTCCTTGTAAGGTGCCTGTCGTCTGTGTGGGGTT
GCTGCCCTCTTACTGCACAGGCTTCTTTCTGCAGCCTCTGCAGATTTGCTGTCTGCATTTCTAT
CCCTTAACGCTCATAGGCTGAGAAGGAGGATTTAGCATAGCCTCTATGGGCATTGTGTGATGGG
AACCTGTCACAGGCTACCACTGAGGCTTTCTGCAGCCCCCAGCAGCATCCAGCTCACTCCTGAT
GGATGAGCAGTCCCCTAGGCCACCTTAAGAGGACATTGTCGCATGAAGAGGTAGCATGGTCCTT
CTCCGTGAAGGCGTGCTCCGAGAGTTGGGAGTGAGGAGAAACTGTGAGGAAGAGAGTACACCAA
TTTACAATTTGTGTTTATTTTCCTTTTTTAAAGACCCTTTTTTTTTAAAGTAAAGTTGTTTTTT
TTTTAAATGGTTTTTACTCAGTTTTTCACCTTCTGTAAATACTTATTAAGGTCTTGAATTATCG
TATAAAGGATCTCTCTGTGTTTGGAGATGTTCTTACTGGCATAAGGTCTGAGGTGTTCCTTACG
TTTCTGGGTATTTATTATGTACACTACGTCGAACCCTGGGAAGTGTGAAGACTGCCTTAGCACG
GTTTTGTGCCTCAAGGCTTAGCACAGGTGGCACAGCCAGTGTTTCTCAGTTAGTGGAAGGCAGC
AGTCCAGTTCTCAGGGGGGCCTGGACATGGTGGAGATGTCGCTCAGCCTCTGAGTCTCTCCTGT
CTGAAGCATACCACCCCACCCTGCCAAACAGATGCTTCCAAACAGTTTAGGAGAGGGAAGGATT
GCTTGCCAACCAGCCTCTGTATGTTCATGATCTCTTTTCGACTAAATTAAAAAACTTAGCCATA
ACCCTAAGTGGACCCCATATATACCAAGTTAATATATATACATGTACATGTATATATATCCTTT
TATGAATTTGTATATATGAATAGAATTTTTATGTTGAGAAAATTACATACATTGTATGTGAGTA
AAATTTTATATGCTGTAGTCTA

hide sequence

RefSeq Acc Id:

XM_006245437 ⟹ XP_006245499

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	99,521,286 - 99,557,966 (+)	NCBI
mRatBN7.2	9	92,073,622 - 92,110,427 (+)	NCBI
Rnor_6.0	9	98,621,500 - 98,658,223 (+)	NCBI
Rnor_5.0	9	98,297,553 - 98,334,249 (+)	NCBI

Sequence:

show sequence

GCAGTGGCTAGCAGCGGTGCACTGTGGGATGGGAGACCGGCGCGCCGGGACGGCGGGCATCTCG
AGGCACCGGGCAGAGGCGCGGTGCGCGAGGAGAGGCGCGAGCGGTCGCGGGCGGCAGCGCCATG
AACGCGGCAGTGGTGCGGCGGACGCAGGAGGCTCTGGGCAAGGTTATCCGGAGGCCGCCGCTCA
CCGAGAAGCTGCTCAACAAGCCACCGTTCCGCTACCTGCACGACATCATCACTGAGGTGATTAG
GATAACTGGCTTCATGAAGGGCCTCTACACAGATGCTGAGATGAAGTCAGATAACGTCAAGGAT
AAAGATGCAAAGATTAGCTTCTTACAGAAGGCCATAGATGTGGTCATGATGGTGTCAGGAGAAC
CCTTGGCAGCAAAACCAGCTAGAATTGTGGCCGGGCACGAACCTGAAAGAACCAATGAGCTGCT
TCAGTTGATTGGCAAGTGCTGCCTCAGCAAGCTCTCCAGTGATGAGGCTGTGAAGAGAGTCTTA
GCTGGGGAGAAGGGGGACTCGAGAGGTCGAGTCCTGAGGACGTCGAAAGCACAAGAGCCCGACA
ACAAGAGTGTGAAGGAGGAAGAGTCCAGAACACAGAAAGAGGAGAAACGAAGCTCTGAGGTGAA
GGAGAGAAGCTCAAGTGCAGAGCACAAACAGAAGGAGGAACTAAAGGAAGACAGCAAGCCTCGG
GAGAAGGAGAGAGACAAGGAGAAGGCAAAGGAGGCTGACAGAGACCGACACAGAGAACCCGACA
GGGACAGAAACAGAGACGGAGAGCGAGAGAAAGCCAGAGCACGGGCCAAGCAGGACAGGGACAG
AAACAACAAAGATCGGGACAGAGAGACTGAAAGGGACAGAGATAGGGACAGGAGGAGTGACGGT
GGGAAAGAAAAAGAGAGGCAGAAGGACCGAGACCGTGACAAGGGAAAAGACCGGGAACGGCGGA
AATCGAAGAATGGAGAACATACCCGGGATCCTGACAGGGAGAAGAGCAGAGATGCAGACAAGTC
AGAGAAAAAGTCAGCAAGTTCAGGGGAGATATCTAAAAAGTTGTCAGAAGGATCTTTCAAAGAT
GTCAAAGCAGAGATGGAGGCTGACATTTCTGTAGGAGCATCCAAGTCTTCAACGTTAAAAGCAT
CAAAACGGCGATCCAAGAATTCACTGGAAGGTGACTCTCCCAGCGACGCAGAAGGAGAAGCTGT
ACCTACTAGCCAAGATAAGCTGGAGGTGACAGAGAATGCAGAAGTCTCAAATGAGCTTCCCTCC
AGCCTCAGAAGAATACCTCGGCCTGGGAGTGCACGGCCAGCACCTCCCAGGGTCAAACGACAAG
AGAGCACAGAAACACTGGCAGGGGACAGGTCGGGAAGTGGTAAGACGGTCTCCACTGTGATCAT
CGACTCCCAGAACTCCGACAATGAGGACGACGAGCAGTTTGTGGTGGAAGCTGCCCCGCAGCTG
TCGGAAATCGCAGAAATTGAAATGGTGCCATCAGGGGACCTGGAGGATGAGGAGAAGCATGGTG
GGCTCGTAAAAAAGATCTTGGAGACGAAGAAGGATTATGAGAAACTGCAGCAGTCTCCCAAGCC
TGGTGAGAAGGAGAGATCCCTTATCTTCGAGTCAGCATGGAAGAAGGAGAAGGACATCGTTTCC
AAGGAGATAGAGAAGCTCCGTGTGTCCATCCAGACCCTGTGTAAGAGCGCACTTCCCCTGGGAA
AGATCATGGACTACATCCAGGAGGATGTGGATGCCATGCAGAATGAGCTGCAGCTGTGGCACAG
CGAGAACCGGCAGCATGCCGAGGCCCTGAGCAAGGAGCAGAGCATCACAGACAGTGCGGTGGAG
CCCCTGAAGGCTGAGCTGTCTGAGCTGGAACAACAGATCAAAGACCAGCAGGACAAGATCTGTG
CGGTGAAGGCCAACATCCTGAAGAATGAGGAGAAGATCCAGAAAATGGTGCACAGTATCAACCT
GTCATCACGAAGATGAGTGGCCAGCACTGCAGAGATGGAACCATCCTCCTCATGATGGACAAGG
GGGCAGGAACCGCCCCACTGAGCCCTGTCTGCTAAGACGATGGCCTGCTGTGCCCTGACCCAGC
TAAGGTCAGAGCTTTCAGTTTAGGCACTAAACTATTAAAAGGCTGTGTTTCCCTCCTTCCAGCT
GCGGTACTCACTGCTTACAAATAGCCCCCAGCTCGCCTTTGTGGGAGGGCTTCTTTCTTTGTTT
GTTTGTTTTTTTTTTGTTTGTTTGTTTTGGTTTTTTTTTTTTTTTTTTTTGCAAATACGTTTTT
TCTGCTGCAGCCTGTTTGACCCTATACCCTAGTTTTAGCAGGTAAGTTGTCTCATCCTACTGGG
CAAACAGCAGGCTTTTGTTTCTGCTTTTGTGTTTCCCAGAAGGACTTCATACTGGCATGGAGCA
AAGGACAGCTATGTATTTTTGGTGGGTATTTTATAAATAGAATGAGGCCTAAAATGTTTAAATT
GCCATTTTATTTCTACCTGAAGGGCGTCATTTCAGCCCATGTCCTTGTAAGGTGCCTGTCGTCT
GTGTGGGGTTGCTGCCCTCTTACTGCACAGGCTTCTTTCTGCAGCCTCTGCAGATTTGCTGTCT
GCATTTCTATCCCTTAACGCTCATAGGCTGAGAAGGAGGATTTAGCATAGCCTCTATGGGCATT
GTGTGATGGGAACCTGTCACAGGCTACCACTGAGGCTTTCTGCAGCCCCCAGCAGCATCCAGCT
CACTCCTGATGGATGAGCAGTCCCCTAGGCCACCTTAAGAGGACATTGTCGCATGAAGAGGTAG
CATGGTCCTTCTCCGTGAAGGCGTGCTCCGAGAGTTGGGAGTGAGGAGAAACTGTGAGGAAGAG
AGTACACCAATTTACAATTTGTGTTTATTTTCCTTTTTTAAAGACCCTTTTTTTTTAAAGTAAA
GTTGTTTTTTTTTTAAATGGTTTTTACTCAGTTTTTCACCTTCTGTAAATACTTATTAAGGTCT
TGAATTATCGTATAAAGGATCTCTCTGTGTTTGGAGATGTTCTTACTGGCATAAGGTCTGAGGT
GTTCCTTACGTTTCTGGGTATTTATTATGTACACTACGTCGAACCCTGGGAAGTGTGAAGACTG
CCTTAGCACGGTTTTGTGCCTCAAGGCTTAGCACAGGTGGCACAGCCAGTGTTTCTCAGTTAGT
GGAAGGCAGCAGTCCAGTTCTCAGGGGGGCCTGGACATGGTGGAGATGTCGCTCAGCCTCTGAG
TCTCTCCTGTCTGAAGCATACCACCCCACCCTGCCAAACAGATGCTTCCAAACAGTTTAGGAGA
GGGAAGGATTGCTTGCCAACCAGCCTCTGTATGTTCATGATCTCTTTTCGACTAAATTAAAAAA
CTTAGCCATAACCCTAAGTGGACCCCATATATACCAAGTTAATATATATACATGTACATGTATA
TATATCCTTTTATGAATTTGTATATATGAATAGAATTTTTATGTTGAGAAAATTACATACATTG
TATGTGAGTAAAATTTTATATGCTGTAGTCTA

hide sequence

RefSeq Acc Id:

XM_017596540 ⟹ XP_017452029

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	99,521,286 - 99,557,966 (+)	NCBI
mRatBN7.2	9	92,073,622 - 92,110,427 (+)	NCBI
Rnor_6.0	9	98,621,499 - 98,658,223 (+)	NCBI

Sequence:

show sequence

CGCAGTGGCTAGCAGCGGTGCACTGTGGGATGGGAGACCGGCGCGCCGGGACGGCGGGCATCTC
GAGGCACCGGGCAGAGGCGCGGTGCGCGAGGAGAGGCGCGAGCGGTCGCGGGCGGCAGCGCCAT
GAACGCGGCAGTGGTGCGGCGGACGCAGGAGGCTCTGGGCAAGGTTATCCGGAGGCCGCCGCTC
ACCGAGAAGCTGCTCAACAAGCCACCGTTCCGCTACCTGCACGACATCATCACTGAGGTGATTA
GGATAACTGGCTTCATGAAGGGCCTCTACACAGATGCTGAGATGAAGTCAGATAACGTCAAGGA
TAAAGATGCAAAGATTAGCTTCTTACAGAAGGCCATAGATGTGGTCATGATGGTGTCAGGAGAA
CCCTTGGCAGCAAAACCAGCTAGAATTGTGGCCGGGCACGAACCTGAAAGAACCAATGAGCTGC
TTCAGTTGATTGGCAAGTGCTGCCTCAGCAAGCTCTCCAGTGATGAGGCTGTGAAGAGAGTCTT
AGCTGGGGAGAAGGGGGACTCGAGAGGTCGAGTCCTGAGGACGTCGAAAGCACAAGAGCCCGAC
AACAAGAGTGTGAAGGAGGAAGAGTCCAGAACACAGAAAGAGGAGAAACGAAGCTCTGAGGTGA
AGGAGAGAAGCTCAAGTGCAGAGCACAAACAGAAGGAGGAACTAAAGGAAGACAGCAAGCCTCG
GGAGAAGGAGAGAGACAAGGAGAAGGCAAAGGAGGCTGACAGAGACCGACACAGAGAACCCGAC
AGGGACAGAAACAGAGACGGAGAGCGAGAGAAAGCCAGAGCACGGGCCAAGCAGGACAGGGACA
GAAACAACAAAGATCGGGACAGAGAGACTGAAAGGGACAGAGATAGGGACAGGAGGAGTGACGG
TGGGAAAGAAAAAGAGAGGCAGAAGGACCGAGACCGTGACAAGGGAAAAGACCGGGAACGGCGG
AAATCGAAGAATGGAGAACATACCCGGGATCCTGACAGGGAGAAGAGCAGAGATGCAGACAAGT
CAGAGAAAAAGGCTGACATTTCTGTAGGAGCATCCAAGTCTTCAACGTTAAAAGCATCAAAACG
GCGATCCAAGAATTCACTGGAAGGAAGAAGGGACTCTAGAGCCAGTGAAAATAACCCTTCCCCT
GAAAAAGAACGTAAGGCTTCCTACCGTAAAGCTAAGAAGGACCATAGCATGAAGCAGCTTGGAA
GGAAAGAGGATAATATTTCAGCTAAGATTTTAGACTCCATAGTGTCGGGACTAAATGACGAACC
AGATCAGGAAACGACAGCTCCAGAAATAGATGATAACTCAGCTAGTCTGTGGCGGGAGAACGCT
GAGCCAGAGCCAGCAGTAAAGCAGAAAGGTGACTCTCCCAGCGACGCAGAAGGAGAAGCTGTAC
CTACTAGCCAAGATAAGCTGGAGGTGACAGAGAATGCAGAAGTCTCAAATGAGCTTCCCTCCAG
CCTCAGAAGAATACCTCGGCCTGGGAGTGCACGGCCAGCACCTCCCAGGGTCAAACGACAAGAG
AGCACAGAAACACTGGCAGGGGACAGGTCGGGAAGTGGTAAGACGGTCTCCACTGTGATCATCG
ACTCCCAGAACTCCGACAATGAGGACGACGAGCAGTTTGTGGTGGAAGCTGCCCCGCAGCTGTC
GGAAATCGCAGAAATTGAAATGGTGCCATCAGGGGACCTGGAGGATGAGGAGAAGCATGGTGGG
CTCGTAAAAAAGATCTTGGAGACGAAGAAGGATTATGAGAAACTGCAGCAGTCTCCCAAGCCTG
GTGAGAAGGAGAGATCCCTTATCTTCGAGTCAGCATGGAAGAAGGAGAAGGACATCGTTTCCAA
GGAGATAGAGAAGCTCCGTGTGTCCATCCAGACCCTGTGTAAGAGCGCACTTCCCCTGGGAAAG
ATCATGGACTACATCCAGGAGGATGTGGATGCCATGCAGAATGAGCTGCAGCTGTGGCACAGCG
AGAACCGGCAGCATGCCGAGGCCCTGAGCAAGGAGCAGAGCATCACAGACAGTGCGGTGGAGCC
CCTGAAGGCTGAGCTGTCTGAGCTGGAACAACAGATCAAAGACCAGCAGGACAAGATCTGTGCG
GTGAAGGCCAACATCCTGAAGAATGAGGAGAAGATCCAGAAAATGGTGCACAGTATCAACCTGT
CATCACGAAGATGAGTGGCCAGCACTGCAGAGATGGAACCATCCTCCTCATGATGGACAAGGGG
GCAGGAACCGCCCCACTGAGCCCTGTCTGCTAAGACGATGGCCTGCTGTGCCCTGACCCAGCTA
AGGTCAGAGCTTTCAGTTTAGGCACTAAACTATTAAAAGGCTGTGTTTCCCTCCTTCCAGCTGC
GGTACTCACTGCTTACAAATAGCCCCCAGCTCGCCTTTGTGGGAGGGCTTCTTTCTTTGTTTGT
TTGTTTTTTTTTTGTTTGTTTGTTTTGGTTTTTTTTTTTTTTTTTTTTGCAAATACGTTTTTTC
TGCTGCAGCCTGTTTGACCCTATACCCTAGTTTTAGCAGGTAAGTTGTCTCATCCTACTGGGCA
AACAGCAGGCTTTTGTTTCTGCTTTTGTGTTTCCCAGAAGGACTTCATACTGGCATGGAGCAAA
GGACAGCTATGTATTTTTGGTGGGTATTTTATAAATAGAATGAGGCCTAAAATGTTTAAATTGC
CATTTTATTTCTACCTGAAGGGCGTCATTTCAGCCCATGTCCTTGTAAGGTGCCTGTCGTCTGT
GTGGGGTTGCTGCCCTCTTACTGCACAGGCTTCTTTCTGCAGCCTCTGCAGATTTGCTGTCTGC
ATTTCTATCCCTTAACGCTCATAGGCTGAGAAGGAGGATTTAGCATAGCCTCTATGGGCATTGT
GTGATGGGAACCTGTCACAGGCTACCACTGAGGCTTTCTGCAGCCCCCAGCAGCATCCAGCTCA
CTCCTGATGGATGAGCAGTCCCCTAGGCCACCTTAAGAGGACATTGTCGCATGAAGAGGTAGCA
TGGTCCTTCTCCGTGAAGGCGTGCTCCGAGAGTTGGGAGTGAGGAGAAACTGTGAGGAAGAGAG
TACACCAATTTACAATTTGTGTTTATTTTCCTTTTTTAAAGACCCTTTTTTTTTAAAGTAAAGT
TGTTTTTTTTTTAAATGGTTTTTACTCAGTTTTTCACCTTCTGTAAATACTTATTAAGGTCTTG
AATTATCGTATAAAGGATCTCTCTGTGTTTGGAGATGTTCTTACTGGCATAAGGTCTGAGGTGT
TCCTTACGTTTCTGGGTATTTATTATGTACACTACGTCGAACCCTGGGAAGTGTGAAGACTGCC
TTAGCACGGTTTTGTGCCTCAAGGCTTAGCACAGGTGGCACAGCCAGTGTTTCTCAGTTAGTGG
AAGGCAGCAGTCCAGTTCTCAGGGGGGCCTGGACATGGTGGAGATGTCGCTCAGCCTCTGAGTC
TCTCCTGTCTGAAGCATACCACCCCACCCTGCCAAACAGATGCTTCCAAACAGTTTAGGAGAGG
GAAGGATTGCTTGCCAACCAGCCTCTGTATGTTCATGATCTCTTTTCGACTAAATTAAAAAACT
TAGCCATAACCCTAAGTGGACCCCATATATACCAAGTTAATATATATACATGTACATGTATATA
TATCCTTTTATGAATTTGTATATATGAATAGAATTTTTATGTTGAGAAAATTACATACATTGTA
TGTGAGTAAAATTTTATATGCTGTAGTCTA

hide sequence

RefSeq Acc Id:

XM_039083925 ⟹ XP_038939853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	99,527,770 - 99,557,966 (+)	NCBI
mRatBN7.2	9	92,081,024 - 92,110,427 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012204	(Get FASTA)	NCBI Sequence Viewer
	XP_006245497	(Get FASTA)	NCBI Sequence Viewer
	XP_006245498	(Get FASTA)	NCBI Sequence Viewer
	XP_006245499	(Get FASTA)	NCBI Sequence Viewer
	XP_017452029	(Get FASTA)	NCBI Sequence Viewer
	XP_038939853	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83645	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053451.2
	ENSRNOP00000069939.1
	ENSRNOP00000076695.1
	ENSRNOP00000076805.1
	ENSRNOP00000085077.1
	ENSRNOP00055013191
	ENSRNOP00060012440
	ENSRNOP00065028955
GenBank Protein	Q5XIN3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012204 ⟸ NM_001012204

- UniProtKB:

Q5XIN3 (UniProtKB/Swiss-Prot), A0A8I5ZJ93 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNAAVVRRTQEALGKVIRRPPLTEKLLNKPPFRYLHDIITEVIRITGFMKGLYTDAEMKSDNVK
DKDAKISFLQKAIDVVMMVSGEPLAAKPARIVAGHEPERTNELLQLIGKCCLSKLSSDEAVKRV
LAGEKGDSRGRVLRTSKAQEPDNKSVKEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKP
REKERDKEKAKEADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSD
GGKEKERQKDRDRDKGKDRERRKSKNGEHTRDPDREKSRDADKSEKKADISVGASKSSTLKASK
RRSKNSLEGRKEDNISAKILDSIVSGLNDEPDQETTAPEIDDNSASLWRENAEPEPAVKQKGDS
PSDAEGEAVPTSQDKLEVTENAEVSNELPSSLRRIPRPGSARPAPPRVKRQESTETLAGDRSGS
GKTVSTVIIDSQNSDNEDDEQFVVEAAPQLSEIAEIEMVPSGDLEDEEKHGGLVKKILETKKDY
EKLQQSPKPGEKERSLIFESAWKKEKDIVSKEIEKLRVSIQTLCKSALPLGKIMDYIQEDVDAM
QNELQLWHSENRQHAEALSKEQSITDSAVEPLKAELSELEQQIKDQQDKICAVKANILKNEEKI
QKMVHSINLSSRR

hide sequence

RefSeq Acc Id:	XP_006245499 ⟸ XM_006245437
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5Y0E3 (UniProtKB/TrEMBL), A0A8I5ZJ93 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNAAVVRRTQEALGKVIRRPPLTEKLLNKPPFRYLHDIITEVIRITGFMKGLYTDAEMKSDNVK DKDAKISFLQKAIDVVMMVSGEPLAAKPARIVAGHEPERTNELLQLIGKCCLSKLSSDEAVKRV LAGEKGDSRGRVLRTSKAQEPDNKSVKEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKP REKERDKEKAKEADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSD GGKEKERQKDRDRDKGKDRERRKSKNGEHTRDPDREKSRDADKSEKKSASSGEISKKLSEGSFK DVKAEMEADISVGASKSSTLKASKRRSKNSLEGDSPSDAEGEAVPTSQDKLEVTENAEVSNELP SSLRRIPRPGSARPAPPRVKRQESTETLAGDRSGSGKTVSTVIIDSQNSDNEDDEQFVVEAAPQ LSEIAEIEMVPSGDLEDEEKHGGLVKKILETKKDYEKLQQSPKPGEKERSLIFESAWKKEKDIV SKEIEKLRVSIQTLCKSALPLGKIMDYIQEDVDAMQNELQLWHSENRQHAEALSKEQSITDSAV EPLKAELSELEQQIKDQQDKICAVKANILKNEEKIQKMVHSINLSSRR hide sequence

RefSeq Acc Id:	XP_006245497 ⟸ XM_006245435
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZYG8 (UniProtKB/TrEMBL), A0A8I5ZJ93 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNAAVVRRTQEALGKVIRRPPLTEKLLNKPPFRYLHDIITEVIRITGFMKGLYTDAEMKSDNVK DKDAKISFLQKAIDVVMMVSGEPLAAKPARIVAGHEPERTNELLQLIGKCCLSKLSSDEAVKRV LAGEKGDSRGRVLRTSKAQEPDNKSVKEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKP REKERDKEKAKEADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSD GGKEKERQKDRDRDKGKDRERRKSKNGEHTRDPDREKSRDADKSEKKADISVGASKSSTLKASK RRSKNSLEDDNSASLWRENAEPEPAVKQKGDSPSDAEGEAVPTSQDKLEVTENAEVSNELPSSL RRIPRPGSARPAPPRVKRQESTETLAGDRSGSGKTVSTVIIDSQNSDNEDDEQFVVEAAPQLSE IAEIEMVPSGDLEDEEKHGGLVKKILETKKDYEKLQQSPKPGEKERSLIFESAWKKEKDIVSKE IEKLRVSIQTLCKSALPLGKIMDYIQEDVDAMQNELQLWHSENRQHAEALSKEQSITDSAVEPL KAELSELEQQIKDQQDKICAVKANILKNEEKIQKMVHSINLSSRR hide sequence

RefSeq Acc Id:	XP_006245498 ⟸ XM_006245436
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZJ93 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNAAVVRRTQEALGKVIRRPPLTEKLLNKPPFRYLHDIITEVIRITGFMKGLYTDAEMKSDNVK DKDAKISFLQKAIDVVMMVSGEPLAAKPARIVAGHEPERTNELLQLIGKCCLSKLSSDEAVKRV LAGEKGDSRGRVLRTSKAQEPDNKSVKEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKP REKERDKEKAKEADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSD GGKEKERQKDRDRDKGKDRERRKSKNGEHTRDPDREKSRDADKSEKKADISVGASKSSTLKASK RRSKNSLEGDSPSDAEGEAVPTSQDKLEVTENAEVSNELPSSLRRIPRPGSARPAPPRVKRQES TETLAGDRSGSGKTVSTVIIDSQNSDNEDDEQFVVEAAPQLSEIAEIEMVPSGDLEDEEKHGGL VKKILETKKDYEKLQQSPKPGEKERSLIFESAWKKEKDIVSKEIEKLRVSIQTLCKSALPLGKI MDYIQEDVDAMQNELQLWHSENRQHAEALSKEQSITDSAVEPLKAELSELEQQIKDQQDKICAV KANILKNEEKIQKMVHSINLSSRR hide sequence

RefSeq Acc Id:	XP_017452029 ⟸ XM_017596540
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JWM5 (UniProtKB/TrEMBL), A0A8I5ZJ93 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNAAVVRRTQEALGKVIRRPPLTEKLLNKPPFRYLHDIITEVIRITGFMKGLYTDAEMKSDNVK DKDAKISFLQKAIDVVMMVSGEPLAAKPARIVAGHEPERTNELLQLIGKCCLSKLSSDEAVKRV LAGEKGDSRGRVLRTSKAQEPDNKSVKEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKP REKERDKEKAKEADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSD GGKEKERQKDRDRDKGKDRERRKSKNGEHTRDPDREKSRDADKSEKKADISVGASKSSTLKASK RRSKNSLEGRRDSRASENNPSPEKERKASYRKAKKDHSMKQLGRKEDNISAKILDSIVSGLNDE PDQETTAPEIDDNSASLWRENAEPEPAVKQKGDSPSDAEGEAVPTSQDKLEVTENAEVSNELPS SLRRIPRPGSARPAPPRVKRQESTETLAGDRSGSGKTVSTVIIDSQNSDNEDDEQFVVEAAPQL SEIAEIEMVPSGDLEDEEKHGGLVKKILETKKDYEKLQQSPKPGEKERSLIFESAWKKEKDIVS KEIEKLRVSIQTLCKSALPLGKIMDYIQEDVDAMQNELQLWHSENRQHAEALSKEQSITDSAVE PLKAELSELEQQIKDQQDKICAVKANILKNEEKIQKMVHSINLSSRR hide sequence

Ensembl Acc Id:

ENSRNOP00000053451 ⟸ ENSRNOT00000056612

Ensembl Acc Id:

ENSRNOP00000069939 ⟸ ENSRNOT00000081992

RefSeq Acc Id:	XP_038939853 ⟸ XM_039083925
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000076695 ⟸ ENSRNOT00000104108

Ensembl Acc Id:

ENSRNOP00000085077 ⟸ ENSRNOT00000100401

Ensembl Acc Id:

ENSRNOP00000076805 ⟸ ENSRNOT00000113396

Protein Domains

TRAF3-interacting protein 1 C-terminal TRAF3-interacting protein 1 N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIN3-F1-model_v2	AlphaFold	Q5XIN3	1-653	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696862

Promoter ID:

EPDNEW_R7387

Type:

initiation region

Name:

Traf3ip1_1

Description:

TRAF3 interacting protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	98,621,518 - 98,621,578	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309252	AgrOrtholog
BioCyc Gene	G2FUF-26712	BioCyc
Ensembl Genes	ENSRNOG00000024468	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055009671	UniProtKB/Swiss-Prot
	ENSRNOG00060009411	UniProtKB/Swiss-Prot
	ENSRNOG00065021086	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000056612.4	UniProtKB/Swiss-Prot
	ENSRNOT00000081992.2	UniProtKB/TrEMBL
	ENSRNOT00000100401.1	UniProtKB/TrEMBL
	ENSRNOT00000104108.1	UniProtKB/TrEMBL
	ENSRNOT00000113396.1	UniProtKB/TrEMBL
	ENSRNOT00055016394	UniProtKB/Swiss-Prot
	ENSRNOT00060015920	UniProtKB/Swiss-Prot
	ENSRNOT00065035912	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.418.50	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7135023	IMAGE-MGC_LOAD
InterPro	TRAF3IP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRAF3IP1_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRAF3IP1_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRAF3IP1_N_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:363286	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94473	IMAGE-MGC_LOAD
NCBI Gene	363286	ENTREZGENE
PANTHER	PTHR31363	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRAF3-INTERACTING PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	MIP-T3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MIP-T3_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Traf3ip1	PhenoGen
RatGTEx	ENSRNOG00000024468	RatGTEx
	ENSRNOG00055009671	RatGTEx
	ENSRNOG00060009411	RatGTEx
	ENSRNOG00065021086	RatGTEx
UniProt	A0A0G2JWM5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y0E3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZJ93	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZYG8	ENTREZGENE, UniProtKB/TrEMBL
	MIPT3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Traf3ip1	TRAF3 interacting protein 1	Traf3ip1	TNF receptor-associated factor 3 interacting protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Traf3ip1	TNF receptor-associated factor 3 interacting protein 1	Traf3ip1_predicted	TNF receptor-associated factor 3 interacting protein 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Traf3ip1_predicted	TNF receptor-associated factor 3 interacting protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM