Trappc8 (trafficking protein particle complex subunit 8) - Rat Genome Database

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Gene: Trappc8 (trafficking protein particle complex subunit 8) Rattus norvegicus
Analyze
Symbol: Trappc8
Name: trafficking protein particle complex subunit 8
RGD ID: 1309102
Description: Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and protein localization to phagophore assembly site. Predicted to be part of TRAPPIII protein complex. Predicted to be active in cytoplasmic vesicle and phagophore assembly site. Orthologous to human TRAPPC8 (trafficking protein particle complex subunit 8); INTERACTS WITH bisphenol A; flutamide; genistein.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC291750; LOC102554177; LOC108348212; LOC291750; RGD1309102; similar to TRS85 homolog; trafficking protein particle complex 8; trafficking protein particle complex subunit 8-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21812,103,874 - 12,180,422 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1812,103,877 - 12,180,107 (-)Ensembl
Rnor_6.01815,298,673 - 15,375,034 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,298,978 - 15,375,031 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,077,693 - 15,154,047 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41812,576,139 - 12,652,361 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11812,602,781 - 12,685,582 (-)NCBI
Celera1812,104,569 - 12,180,967 (-)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21525244  


Genomics

Comparative Map Data
Trappc8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21812,103,874 - 12,180,422 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1812,103,877 - 12,180,107 (-)Ensembl
Rnor_6.01815,298,673 - 15,375,034 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,298,978 - 15,375,031 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,077,693 - 15,154,047 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41812,576,139 - 12,652,361 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11812,602,781 - 12,685,582 (-)NCBI
Celera1812,104,569 - 12,180,967 (-)NCBICelera
Cytogenetic Map18p12NCBI
TRAPPC8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381831,829,197 - 31,943,128 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1831,829,197 - 31,953,136 (-)EnsemblGRCh38hg38GRCh38
GRCh371829,409,160 - 29,523,091 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361827,663,134 - 27,777,089 (-)NCBINCBI36hg18NCBI36
Build 341827,663,901 - 27,777,067NCBI
Celera1826,216,177 - 26,330,128 (-)NCBI
Cytogenetic Map18q12.1NCBI
HuRef1826,266,277 - 26,380,250 (-)NCBIHuRef
CHM1_11829,336,396 - 29,450,326 (-)NCBICHM1_1
T2T-CHM13v2.01832,019,706 - 32,133,657 (-)NCBI
Trappc8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391820,950,268 - 21,033,851 (-)NCBIGRCm39mm39
GRCm39 Ensembl1820,950,280 - 21,029,150 (-)Ensembl
GRCm381820,817,211 - 20,896,425 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1820,817,223 - 20,896,093 (-)EnsemblGRCm38mm10GRCm38
MGSCv371820,975,725 - 21,054,579 (-)NCBIGRCm37mm9NCBIm37
MGSCv361820,989,155 - 21,039,088 (-)NCBImm8
Celera1821,313,793 - 21,392,648 (-)NCBICelera
Cytogenetic Map18A2NCBI
Trappc8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540219,130,393 - 19,216,705 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540219,130,393 - 19,223,019 (-)NCBIChiLan1.0ChiLan1.0
TRAPPC8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11828,645,371 - 28,751,147 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1828,636,626 - 28,751,149 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01825,047,609 - 25,154,635 (-)NCBIMhudiblu_PPA_v0panPan3
TRAPPC8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1757,665,209 - 57,752,959 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl757,665,238 - 57,752,357 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha757,098,925 - 57,187,019 (+)NCBI
ROS_Cfam_1.0757,645,935 - 57,734,073 (+)NCBI
ROS_Cfam_1.0 Ensembl757,645,961 - 57,734,073 (+)Ensembl
UMICH_Zoey_3.1757,323,470 - 57,411,548 (+)NCBI
UNSW_CanFamBas_1.0757,343,103 - 57,437,472 (+)NCBI
UU_Cfam_GSD_1.0757,637,939 - 57,726,070 (+)NCBI
Trappc8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494453,338,665 - 53,430,719 (+)NCBI
SpeTri2.0NW_0049366821,340,252 - 1,431,907 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAPPC8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6115,693,119 - 115,786,648 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16115,692,509 - 115,786,668 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26108,283,310 - 108,310,034 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRAPPC8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11848,788,760 - 48,900,322 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1848,789,136 - 48,901,279 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605023,437,700 - 23,550,211 (+)NCBIVero_WHO_p1.0
Trappc8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624770999,934 - 1,090,907 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_004624770999,888 - 1,090,606 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH128452  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21812,134,541 - 12,134,721 (-)MAPPERmRatBN7.2
Rnor_6.01815,343,736 - 15,343,915NCBIRnor6.0
Rnor_5.01815,122,749 - 15,122,928UniSTSRnor5.0
RGSC_v3.41812,606,802 - 12,606,981UniSTSRGSC3.4
Celera1812,135,226 - 12,135,405UniSTS
RH 3.4 Map18120.3UniSTS
Cytogenetic Map18p12UniSTS
RH128574  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21812,104,152 - 12,104,362 (-)MAPPERmRatBN7.2
Rnor_6.01815,374,546 - 15,374,755NCBIRnor6.0
Rnor_5.01815,153,559 - 15,153,768UniSTSRnor5.0
RGSC_v3.41812,576,415 - 12,576,624UniSTSRGSC3.4
Celera1812,104,845 - 12,105,054UniSTS
RH 3.4 Map18134.31UniSTS
Cytogenetic Map18p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18679125112205285Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18679125112205285Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18679125112205285Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18679125112205285Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18679125112205285Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:91
Interacting mature miRNAs:111
Transcripts:ENSRNOT00000021263
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 56 40 19 40 8 8 74 35 38 11 8
Low 7 1 1 1 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000021263   ⟹   ENSRNOP00000021263
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1812,103,877 - 12,180,107 (-)Ensembl
Rnor_6.0 Ensembl1815,298,978 - 15,375,031 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117116   ⟹   ENSRNOP00000082805
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1812,103,877 - 12,180,107 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118017   ⟹   ENSRNOP00000092280
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1812,103,877 - 12,159,313 (-)Ensembl
RefSeq Acc Id: NM_001106160   ⟹   NP_001099630
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21812,103,877 - 12,180,107 (-)NCBI
Rnor_6.01815,298,978 - 15,375,031 (+)NCBI
Rnor_5.01815,077,693 - 15,154,047 (+)NCBI
RGSC_v3.41812,576,139 - 12,652,361 (-)RGD
Celera1812,104,569 - 12,180,967 (-)RGD
Sequence:
RefSeq Acc Id: XM_006254461   ⟹   XP_006254523
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21812,103,874 - 12,180,419 (-)NCBI
Rnor_6.01815,298,673 - 15,375,034 (+)NCBI
Rnor_5.01815,077,693 - 15,154,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254462   ⟹   XP_006254524
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21812,103,874 - 12,180,419 (-)NCBI
Rnor_6.01815,298,673 - 15,375,034 (+)NCBI
Rnor_5.01815,077,693 - 15,154,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039096737   ⟹   XP_038952665
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21812,103,874 - 12,180,418 (-)NCBI
RefSeq Acc Id: XM_039096738   ⟹   XP_038952666
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21812,103,874 - 12,157,842 (-)NCBI
RefSeq Acc Id: XM_039096739   ⟹   XP_038952667
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21812,121,436 - 12,180,421 (-)NCBI
RefSeq Acc Id: XM_039096740   ⟹   XP_038952668
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21812,132,469 - 12,180,422 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001099630   ⟸   NM_001106160
- UniProtKB: F1M9W9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254523   ⟸   XM_006254461
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006254524   ⟸   XM_006254462
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000021263   ⟸   ENSRNOT00000021263
RefSeq Acc Id: XP_038952665   ⟸   XM_039096737
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038952666   ⟸   XM_039096738
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038952667   ⟸   XM_039096739
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038952668   ⟸   XM_039096740
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000092280   ⟸   ENSRNOT00000118017
RefSeq Acc Id: ENSRNOP00000082805   ⟸   ENSRNOT00000117116

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M9W9-F1-model_v2 AlphaFold F1M9W9 1-1433 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
18 15352605 15352606 C T snv F344/NRrrc (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309102 AgrOrtholog
BioCyc Gene G2FUF-8212 BioCyc
Ensembl Genes ENSRNOG00000022202 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000021263 ENTREZGENE
  ENSRNOP00000021263.7 UniProtKB/TrEMBL
  ENSRNOP00000082805.1 UniProtKB/TrEMBL
  ENSRNOP00000092280.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021263 ENTREZGENE
  ENSRNOT00000021263.7 UniProtKB/TrEMBL
  ENSRNOT00000117116.1 UniProtKB/TrEMBL
  ENSRNOT00000118017.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7302863 IMAGE-MGC_LOAD
InterPro TPR-like_helical UniProtKB/TrEMBL
  TRAPP_III_complex_Trs85 UniProtKB/TrEMBL
KEGG Report rno:291750 UniProtKB/TrEMBL
MGC_CLONE MGC:188147 IMAGE-MGC_LOAD
NCBI Gene 291750 ENTREZGENE
PANTHER PTHR12975 UniProtKB/TrEMBL
Pfam TRAPPC-Trs85 UniProtKB/TrEMBL
PhenoGen Trappc8 PhenoGen
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A8I6AGT6_RAT UniProtKB/TrEMBL
  A0A8I6G9Y3_RAT UniProtKB/TrEMBL
  F1M9W9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Trappc8  trafficking protein particle complex subunit 8  LOC108348212  trafficking protein particle complex subunit 8-like  Data Merged 737654 PROVISIONAL
2021-02-18 Trappc8  trafficking protein particle complex subunit 8  Trappc8  trafficking protein particle complex 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-08-02 LOC108348212  trafficking protein particle complex subunit 8-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2015-07-29 Trappc8  trafficking protein particle complex 8  LOC102554177  trafficking protein particle complex subunit 8-like  Data Merged 737654 PROVISIONAL
2013-12-18 LOC102554177  trafficking protein particle complex subunit 8-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2011-05-16 Trappc8  trafficking protein particle complex 8   RGD1309102  similar to TRS85 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1309102  similar to TRS85 homolog   RGD1309102_predicted  similar to TRS85 homolog (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309102_predicted  similar to TRS85 homolog (predicted)  LOC291750_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC291750_predicted  similar to TRS85 homolog (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL