Mrm3 (mitochondrial rRNA methyltransferase 3) - Rat Genome Database

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Gene: Mrm3 (mitochondrial rRNA methyltransferase 3) Rattus norvegicus
Analyze
Symbol: Mrm3
Name: mitochondrial rRNA methyltransferase 3
RGD ID: 1309077
Description: Predicted to enable identical protein binding activity and rRNA (guanosine-2'-O-)-methyltransferase activity. Predicted to be involved in rRNA 2'-O-methylation. Predicted to be located in mitochondrion. Orthologous to human MRM3 (mitochondrial rRNA methyltransferase 3); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC360569; LOC360569; RGD1309077; RNA methyltransferase like 1; RNA methyltransferase-like protein 1; Rnmtl1; rRNA methyltransferase 3, mitochondrial; similar to putative RNA methyltransferase; uncharacterized protein LOC360569
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81061,594,155 - 61,623,659 (+)NCBIGRCr8
mRatBN7.21061,095,920 - 61,125,421 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1061,095,952 - 61,102,630 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1065,738,499 - 65,745,175 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01065,243,947 - 65,250,623 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01060,714,294 - 60,720,972 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01064,398,308 - 64,406,193 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1064,398,339 - 64,405,017 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01063,609,355 - 63,616,033 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,600,163 - 63,600,936 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11063,613,778 - 63,614,559 (+)NCBI
Celera1060,111,345 - 60,118,020 (+)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrion  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18614015   PMID:21873635   PMID:22658674   PMID:22681889   PMID:24036117   PMID:25074936  


Genomics

Comparative Map Data
Mrm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81061,594,155 - 61,623,659 (+)NCBIGRCr8
mRatBN7.21061,095,920 - 61,125,421 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1061,095,952 - 61,102,630 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1065,738,499 - 65,745,175 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01065,243,947 - 65,250,623 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01060,714,294 - 60,720,972 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01064,398,308 - 64,406,193 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1064,398,339 - 64,405,017 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01063,609,355 - 63,616,033 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,600,163 - 63,600,936 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11063,613,778 - 63,614,559 (+)NCBI
Celera1060,111,345 - 60,118,020 (+)NCBICelera
Cytogenetic Map10q24NCBI
MRM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3817782,353 - 792,509 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl17782,353 - 792,509 (+)EnsemblGRCh38hg38GRCh38
GRCh3717685,593 - 695,749 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3617632,263 - 642,491 (+)NCBINCBI36Build 36hg18NCBI36
Build 3417632,262 - 642,490NCBI
Celera17697,654 - 707,881 (+)NCBICelera
Cytogenetic Map17p13.3NCBI
HuRef17596,108 - 606,167 (+)NCBIHuRef
CHM1_117694,323 - 704,548 (+)NCBICHM1_1
T2T-CHM13v2.017668,784 - 678,768 (+)NCBIT2T-CHM13v2.0
Mrm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,134,562 - 76,141,451 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1176,134,541 - 76,141,445 (+)EnsemblGRCm39 Ensembl
GRCm381176,243,736 - 76,250,625 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1176,243,715 - 76,250,619 (+)EnsemblGRCm38mm10GRCm38
MGSCv371176,057,238 - 76,064,124 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361176,059,965 - 76,066,817 (+)NCBIMGSCv36mm8
Celera1183,756,564 - 83,763,458 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.92NCBI
Mrm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554812,324,409 - 2,332,522 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554812,324,370 - 2,333,788 (+)NCBIChiLan1.0ChiLan1.0
MRM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2622,794,447 - 22,795,438 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1771,119,171 - 71,120,162 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0718,615,903 - 18,616,894 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1717,920,413 - 17,942,602 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl17672,895 - 682,795 (+)Ensemblpanpan1.1panPan2
MRM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1945,004,382 - 45,011,834 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl945,005,145 - 45,011,811 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha944,154,903 - 44,162,361 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0945,822,471 - 45,829,938 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl945,822,475 - 45,829,925 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1944,601,216 - 44,608,659 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0944,894,820 - 44,902,487 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0944,973,562 - 44,981,019 (-)NCBIUU_Cfam_GSD_1.0
Mrm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560244,120,525 - 44,126,162 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365386,998,472 - 7,004,086 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365386,998,472 - 7,004,109 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1247,080,367 - 47,087,405 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11247,077,812 - 47,087,409 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21249,244,622 - 49,251,667 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12140,183,052 - 40,185,655 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604264,342,413 - 64,343,242 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247863,524,380 - 3,532,571 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247863,524,049 - 3,532,621 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mrm3
115 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:59
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000056278
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
2306787Ean3Experimental allergic neuritis QTL 33.1nervous system integrity trait (VT:0010566)body weight loss (CMO:0001399)105379738566979128Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat

Markers in Region
RH133541  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21061,102,372 - 61,102,552 (+)MAPPERmRatBN7.2
Rnor_6.01064,404,760 - 64,404,939NCBIRnor6.0
Rnor_5.01063,609,433 - 63,609,612UniSTSRnor5.0
Celera1060,117,763 - 60,117,942UniSTS
Cytogenetic Map10q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 27 22 14 8 14 61 18 36
Low 2 16 35 27 11 27 8 11 13 17 5 11 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000056278   ⟹   ENSRNOP00000053117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1061,095,952 - 61,102,630 (+)Ensembl
Rnor_6.0 Ensembl1064,398,339 - 64,405,017 (+)Ensembl
RefSeq Acc Id: NM_001108282   ⟹   NP_001101752
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81061,594,187 - 61,600,865 (+)NCBI
mRatBN7.21061,095,952 - 61,102,630 (+)NCBI
Rnor_6.01064,398,339 - 64,405,017 (+)NCBI
Rnor_5.01063,609,355 - 63,616,033 (-)NCBI
Celera1060,111,345 - 60,118,020 (+)RGD
Sequence:
RefSeq Acc Id: XM_017597379   ⟹   XP_017452868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81061,594,163 - 61,600,846 (+)NCBI
mRatBN7.21061,095,920 - 61,103,806 (+)NCBI
Rnor_6.01064,398,308 - 64,406,193 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039086327   ⟹   XP_038942255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81061,594,155 - 61,621,837 (+)NCBI
mRatBN7.21061,095,937 - 61,122,828 (+)NCBI
RefSeq Acc Id: XM_039086328   ⟹   XP_038942256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81061,594,155 - 61,608,919 (+)NCBI
mRatBN7.21061,095,937 - 61,109,152 (+)NCBI
RefSeq Acc Id: XM_039086329   ⟹   XP_038942257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81061,594,155 - 61,607,973 (+)NCBI
mRatBN7.21061,095,937 - 61,109,481 (+)NCBI
RefSeq Acc Id: XM_039086330   ⟹   XP_038942258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81061,594,155 - 61,623,659 (+)NCBI
mRatBN7.21061,095,937 - 61,125,393 (+)NCBI
RefSeq Acc Id: XM_039086331   ⟹   XP_038942259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81061,594,156 - 61,607,973 (+)NCBI
mRatBN7.21061,095,937 - 61,109,477 (+)NCBI
RefSeq Acc Id: XM_039086332   ⟹   XP_038942260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81061,594,156 - 61,623,659 (+)NCBI
mRatBN7.21061,095,937 - 61,125,421 (+)NCBI
RefSeq Acc Id: NP_001101752   ⟸   NM_001108282
- UniProtKB: D3ZQG0 (UniProtKB/TrEMBL),   A6HGV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452868   ⟸   XM_017597379
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000053117   ⟸   ENSRNOT00000056278
RefSeq Acc Id: XP_038942260   ⟸   XM_039086332
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038942258   ⟸   XM_039086330
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038942255   ⟸   XM_039086327
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038942257   ⟸   XM_039086329
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038942259   ⟸   XM_039086331
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038942256   ⟸   XM_039086328
- Peptide Label: isoform X3
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQG0-F1-model_v2 AlphaFold D3ZQG0 1-418 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697454
Promoter ID:EPDNEW_R7978
Type:multiple initiation site
Name:Mrm3_1
Description:mitochondrial rRNA methyltransferase 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01064,398,341 - 64,398,401EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309077 AgrOrtholog
BioCyc Gene G2FUF-24160 BioCyc
Ensembl Genes ENSRNOG00000037238 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000056278.4 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.30 UniProtKB/TrEMBL
  3.40.1280.10 UniProtKB/TrEMBL
InterPro Alpha/beta_knot_MTases UniProtKB/TrEMBL
  L30e-like UniProtKB/TrEMBL
  SpoU_MeTrfase UniProtKB/TrEMBL
  SpoU_subst-bd UniProtKB/TrEMBL
  tRNA_m1G_MTases_N UniProtKB/TrEMBL
KEGG Report rno:360569 UniProtKB/TrEMBL
NCBI Gene 360569 ENTREZGENE
PANTHER RRNA METHYLTRANSFERASE 3 UniProtKB/TrEMBL
  RRNA METHYLTRANSFERASE 3, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam SpoU_methylase UniProtKB/TrEMBL
PhenoGen Mrm3 PhenoGen
RatGTEx ENSRNOG00000037238 RatGTEx
SMART SpoU_sub_bind UniProtKB/TrEMBL
Superfamily-SCOP SSF55315 UniProtKB/TrEMBL
  SSF75217 UniProtKB/TrEMBL
UniProt A6HGV3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQG0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-20 Mrm3  mitochondrial rRNA methyltransferase 3  Rnmtl1  RNA methyltransferase like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-07-09 Rnmtl1  RNA methyltransferase like 1  RGD1309077  similar to putative RNA methyltransferase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 RGD1309077  similar to putative RNA methyltransferase  LOC100360580  RNA methyltransferase like 1  Data merged from RGD:2321877 1643240 APPROVED
2010-05-06 LOC100360580  RNA methyltransferase like 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1309077  similar to putative RNA methyltransferase   RGD1309077_predicted  similar to putative RNA methyltransferase (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309077_predicted  similar to putative RNA methyltransferase (predicted)  LOC360569_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC360569_predicted  similar to putative RNA methyltransferase (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL