Alg5 (ALG5, dolichyl-phosphate beta-glucosyltransferase) - Rat Genome Database

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Gene: Alg5 (ALG5, dolichyl-phosphate beta-glucosyltransferase) Rattus norvegicus
Analyze
Symbol: Alg5
Name: ALG5, dolichyl-phosphate beta-glucosyltransferase
RGD ID: 1308900
Description: Predicted to enable dolichyl-phosphate beta-glucosyltransferase activity. Predicted to be involved in dolichol-linked oligosaccharide biosynthetic process. Predicted to act upstream of or within determination of left/right symmetry. Predicted to be active in cytoplasmic side of rough endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in polycystic kidney disease 7. Orthologous to human ALG5 (ALG5 dolichyl-phosphate beta-glucosyltransferase); PARTICIPATES IN N-linked glycan biosynthetic pathway; INTERACTS WITH 2,6-dinitrotoluene; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: asparagine-linked glycosylation 5 homolog (S. cerevisiae, dolichyl-phosphate beta-glucosyltransferase); asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase); asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog; asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae); dolichyl-phosphate beta-glucosyltransferase; LOC295051
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82141,087,126 - 141,101,397 (+)NCBIGRCr8
mRatBN7.22138,936,998 - 138,951,228 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2138,936,993 - 138,951,216 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2145,511,766 - 145,525,477 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02143,623,792 - 143,637,501 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02138,255,627 - 138,269,336 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02143,932,242 - 143,946,472 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2143,932,739 - 143,946,466 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02160,317,029 - 160,331,259 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42143,962,038 - 143,975,765 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12143,912,000 - 143,925,728 (+)NCBI
Celera2133,422,302 - 133,436,029 (+)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15755804   PMID:19946888  


Genomics

Comparative Map Data
Alg5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82141,087,126 - 141,101,397 (+)NCBIGRCr8
mRatBN7.22138,936,998 - 138,951,228 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2138,936,993 - 138,951,216 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2145,511,766 - 145,525,477 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02143,623,792 - 143,637,501 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02138,255,627 - 138,269,336 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02143,932,242 - 143,946,472 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2143,932,739 - 143,946,466 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02160,317,029 - 160,331,259 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42143,962,038 - 143,975,765 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12143,912,000 - 143,925,728 (+)NCBI
Celera2133,422,302 - 133,436,029 (+)NCBICelera
Cytogenetic Map2q26NCBI
ALG5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381336,949,738 - 36,999,367 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1336,949,738 - 37,000,763 (-)EnsemblGRCh38hg38GRCh38
GRCh371337,523,875 - 37,573,504 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361336,421,967 - 36,471,477 (-)NCBINCBI36Build 36hg18NCBI36
Build 341336,421,966 - 36,471,477NCBI
Celera1318,591,143 - 18,640,745 (-)NCBICelera
Cytogenetic Map13q13.3NCBI
HuRef1318,335,281 - 18,381,329 (-)NCBIHuRef
CHM1_11337,491,436 - 37,541,055 (-)NCBICHM1_1
T2T-CHM13v2.01336,168,907 - 36,218,563 (-)NCBIT2T-CHM13v2.0
Alg5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39354,642,960 - 54,657,216 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl354,642,960 - 54,658,739 (+)EnsemblGRCm39 Ensembl
GRCm38354,735,539 - 54,749,795 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl354,735,539 - 54,751,318 (+)EnsemblGRCm38mm10GRCm38
MGSCv37354,539,461 - 54,553,717 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36354,823,468 - 54,837,724 (+)NCBIMGSCv36mm8
Celera354,460,433 - 54,471,453 (+)NCBICelera
Cytogenetic Map3CNCBI
cM Map325.6NCBI
Alg5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554319,059,098 - 9,097,510 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554319,059,074 - 9,097,597 (+)NCBIChiLan1.0ChiLan1.0
ALG5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21436,469,547 - 36,520,406 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11327,575,716 - 27,625,936 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01318,156,978 - 18,207,970 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11336,587,531 - 36,638,107 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1336,587,531 - 36,637,238 (-)Ensemblpanpan1.1panPan2
ALG5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1253,705,521 - 3,753,987 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl253,706,423 - 3,753,947 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha253,735,489 - 3,784,093 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0253,803,681 - 3,852,316 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl253,804,682 - 3,852,316 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1253,706,661 - 3,755,223 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0253,697,910 - 3,746,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0253,769,810 - 3,818,472 (+)NCBIUU_Cfam_GSD_1.0
Alg5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945164,839,486 - 164,880,546 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647231,071,832 - 31,111,180 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647231,071,746 - 31,112,600 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALG5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,777,552 - 12,816,008 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,777,549 - 12,815,969 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21112,785,116 - 12,797,956 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ALG5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1315,468,291 - 15,519,137 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl315,468,208 - 15,518,941 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605728,765,647 - 28,816,592 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Alg5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624776231,610 - 280,488 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624776230,565 - 280,584 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Alg5
92 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:251
Count of miRNA genes:172
Interacting mature miRNAs:193
Transcripts:ENSRNOT00000058001
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1549841Bp256Blood pressure QTL 2560.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2137219876142323610Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2122609194206936711Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2127447387143657569Rat
12879830Bw178Body weight QTL 1780.001body mass (VT:0001259)body weight (CMO:0000012)2137219876142323610Rat
12879831Cm82Cardiac mass QTL 820.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2137219876142323610Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
12879832Cm83Cardiac mass QTL 830.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2137219876142323610Rat
12879833Cm84Cardiac mass QTL 840.001heart right ventricle mass (VT:0007033)heart weight to body weight ratio (CMO:0000074)2137219876142323610Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
12879834Am1Aortic mass QTL 10.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2137219876142323610Rat
12879835Kidm60Kidney mass QTL 600.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2137219876142323610Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527143657569Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2104559726149559726Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2118111229149559726Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
1581552Pur12Proteinuria QTL 125.190.0009urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2112103657148076632Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1354594Despr10Despair related QTL 102e-06locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)228484589169504100Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)228484589169504100Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat

Markers in Region
D3Mit275  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22138,945,008 - 138,945,127 (+)MAPPERmRatBN7.2
Rnor_6.02143,940,247 - 143,940,365NCBIRnor6.0
Rnor_5.02160,323,136 - 160,323,254UniSTSRnor5.0
RGSC_v3.42143,969,546 - 143,969,664UniSTSRGSC3.4
Celera2133,429,810 - 133,429,928UniSTS
Cytogenetic Map2q26UniSTS
RH129855  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22138,949,854 - 138,950,803 (+)MAPPERmRatBN7.2
Rnor_6.02143,945,093 - 143,946,041NCBIRnor6.0
Rnor_5.02160,317,460 - 160,318,408UniSTSRnor5.0
RGSC_v3.42143,974,392 - 143,975,340UniSTSRGSC3.4
Celera2133,434,656 - 133,435,604UniSTS
RH 3.4 Map2860.2UniSTS
Cytogenetic Map2q26UniSTS
RH130137  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22138,950,817 - 138,951,004 (+)MAPPERmRatBN7.2
Rnor_6.02143,946,056 - 143,946,242NCBIRnor6.0
Rnor_5.02160,317,259 - 160,317,445UniSTSRnor5.0
RGSC_v3.42143,975,355 - 143,975,541UniSTSRGSC3.4
Celera2133,435,619 - 133,435,805UniSTS
RH 3.4 Map2859.9UniSTS
Cytogenetic Map2q26UniSTS
RH139993  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22138,950,866 - 138,951,053 (+)MAPPERmRatBN7.2
Rnor_6.02143,946,105 - 143,946,291NCBIRnor6.0
Rnor_5.02160,317,210 - 160,317,396UniSTSRnor5.0
RGSC_v3.42143,975,404 - 143,975,590UniSTSRGSC3.4
Celera2133,435,668 - 133,435,854UniSTS
RH 3.4 Map586.9UniSTS
Cytogenetic Map2q26UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000088575   ⟹   ENSRNOP00000068790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2138,937,483 - 138,951,216 (+)Ensembl
Rnor_6.0 Ensembl2143,932,739 - 143,946,466 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093993   ⟹   ENSRNOP00000093867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2138,940,208 - 138,951,216 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109521   ⟹   ENSRNOP00000090803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2138,936,993 - 138,950,862 (+)Ensembl
RefSeq Acc Id: NM_001025407   ⟹   NP_001020578
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,087,664 - 141,101,391 (+)NCBI
mRatBN7.22138,937,501 - 138,951,228 (+)NCBI
Rnor_6.02143,932,739 - 143,946,466 (+)NCBI
Rnor_5.02160,317,029 - 160,331,259 (-)NCBI
RGSC_v3.42143,962,038 - 143,975,765 (+)RGD
Celera2133,422,302 - 133,436,029 (+)RGD
Sequence:
RefSeq Acc Id: XM_006232333   ⟹   XP_006232395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,087,126 - 141,101,397 (+)NCBI
mRatBN7.22138,936,998 - 138,950,886 (+)NCBI
Rnor_6.02143,932,242 - 143,946,472 (+)NCBI
Rnor_5.02160,317,029 - 160,331,259 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001020578   ⟸   NM_001025407
- UniProtKB: Q4QQS6 (UniProtKB/TrEMBL),   A6JVD5 (UniProtKB/TrEMBL),   A0A8I6GKU7 (UniProtKB/TrEMBL),   A0A0G2JTP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232395   ⟸   XM_006232333
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GIJ2 (UniProtKB/TrEMBL),   A6JVD2 (UniProtKB/TrEMBL),   A0A8I6GKU7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068790   ⟸   ENSRNOT00000088575
Ensembl Acc Id: ENSRNOP00000093867   ⟸   ENSRNOT00000093993
Ensembl Acc Id: ENSRNOP00000090803   ⟸   ENSRNOT00000109521
Protein Domains
Glycosyltransferase 2-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4QQS6-F1-model_v2 AlphaFold Q4QQS6 1-324 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691328
Promoter ID:EPDNEW_R1853
Type:multiple initiation site
Name:Alg5_1
Description:ALG5, dolichyl-phosphate beta-glucosyltransferase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02143,932,721 - 143,932,781EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308900 AgrOrtholog
BioCyc Gene G2FUF-53075 BioCyc
BioCyc Pathway MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS [protein N-glycosylation initial phase (eukaryotic)] BioCyc
BioCyc Pathway Image MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS BioCyc
Ensembl Genes ENSRNOG00000058694 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000088575.2 UniProtKB/TrEMBL
  ENSRNOT00000093993.1 UniProtKB/TrEMBL
  ENSRNOT00000109521.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7456888 IMAGE-MGC_LOAD
InterPro DPG_synthase UniProtKB/TrEMBL
  Glyco_trans_2 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report rno:295051 UniProtKB/TrEMBL
MGC_CLONE MGC:116195 IMAGE-MGC_LOAD
NCBI Gene 295051 ENTREZGENE
PANTHER DOLICHYL-PHOSPHATE BETA-GLUCOSYLTRANSFERASE UniProtKB/TrEMBL
  GLYCOSYL TRANSFERASE UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/TrEMBL
PhenoGen Alg5 PhenoGen
RatGTEx ENSRNOG00000058694 RatGTEx
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A0G2JTP4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GIJ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKU7 ENTREZGENE, UniProtKB/TrEMBL
  A6JVD2 ENTREZGENE, UniProtKB/TrEMBL
  A6JVD3_RAT UniProtKB/TrEMBL
  A6JVD4_RAT UniProtKB/TrEMBL
  A6JVD5 ENTREZGENE, UniProtKB/TrEMBL
  A6JVD6_RAT UniProtKB/TrEMBL
  A6JVD7_RAT UniProtKB/TrEMBL
  A6JVD8_RAT UniProtKB/TrEMBL
  Q4QQS6 ENTREZGENE
UniProt Secondary Q4QQS6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-27 Alg5  ALG5, dolichyl-phosphate beta-glucosyltransferase  Alg5  asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-02-04 Alg5  asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)  Alg5  asparagine-linked glycosylation 5 homolog (S. cerevisiae, dolichyl-phosphate beta-glucosyltransferase)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-26 Alg5  asparagine-linked glycosylation 5 homolog (S. cerevisiae, dolichyl-phosphate beta-glucosyltransferase)  Alg5  asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Alg5  asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)  Alg5_predicted  asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Alg5_predicted  asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase) (predicted)      Symbol and Name status set to approved 70820 APPROVED