Apmap (adipocyte plasma membrane associated protein) - Rat Genome Database

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Gene: Apmap (adipocyte plasma membrane associated protein) Rattus norvegicus
Analyze
Symbol: Apmap
Name: adipocyte plasma membrane associated protein
RGD ID: 1308874
Description: Predicted to enable arylesterase activity. Predicted to be located in cell surface and membrane. Orthologous to human APMAP (adipocyte plasma membrane associated protein); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ab2-305; adipocyte plasma membrane-associated protein; LOC366227; MGC125177; RGD1308874; similar to RIKEN cDNA 2310001A20
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83159,869,451 - 159,897,727 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3159,869,451 - 159,897,726 (-)EnsemblGRCr8
mRatBN7.23139,409,021 - 139,437,296 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3139,409,022 - 139,437,341 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3143,305,746 - 143,333,704 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03151,889,489 - 151,917,448 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03149,637,607 - 149,665,574 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03146,376,828 - 146,407,259 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3146,376,828 - 146,407,252 (-)Ensemblrn6Rnor6.0
Rnor_5.03152,738,538 - 152,766,532 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43141,203,219 - 141,222,722 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3138,172,501 - 138,191,087 (-)NCBICelera
RGSC_v3.13141,108,793 - 141,113,359 (-)NCBI
Cytogenetic Map3q41NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
cisplatin  (EXP)
clofibrate  (ISO)
clofibric acid  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
fenthion  (ISO)
fipronil  (EXP)
flutamide  (EXP)
furan  (EXP)
glafenine  (EXP)
indometacin  (ISO)
iodide salt  (EXP)
ivermectin  (ISO)
ketamine  (EXP)
methapyrilene  (ISO)
methidathion  (ISO)
monosodium L-glutamate  (ISO)
nefazodone  (EXP)
nickel sulfate  (ISO)
nimesulide  (EXP)
Nutlin-3  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
SB 431542  (ISO)
simvastatin  (EXP)
sodium arsenite  (ISO)
sodium chloride  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
tolcapone  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell surface  (IEA,ISO)
membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18513186   PMID:19946888   PMID:23376485  


Genomics

Comparative Map Data
Apmap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83159,869,451 - 159,897,727 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3159,869,451 - 159,897,726 (-)EnsemblGRCr8
mRatBN7.23139,409,021 - 139,437,296 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3139,409,022 - 139,437,341 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3143,305,746 - 143,333,704 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03151,889,489 - 151,917,448 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03149,637,607 - 149,665,574 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03146,376,828 - 146,407,259 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3146,376,828 - 146,407,252 (-)Ensemblrn6Rnor6.0
Rnor_5.03152,738,538 - 152,766,532 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43141,203,219 - 141,222,722 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3138,172,501 - 138,191,087 (-)NCBICelera
RGSC_v3.13141,108,793 - 141,113,359 (-)NCBI
Cytogenetic Map3q41NCBI
APMAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382024,962,925 - 24,992,751 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2024,962,925 - 24,992,751 (-)Ensemblhg38GRCh38
GRCh372024,943,561 - 24,973,387 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362024,891,580 - 24,921,425 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342024,891,580 - 24,921,425NCBI
Celera2025,017,384 - 25,047,231 (-)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2024,900,472 - 24,930,262 (-)NCBIHuRef
CHM1_12024,944,069 - 24,973,914 (-)NCBICHM1_1
T2T-CHM13v2.02025,027,196 - 25,056,965 (-)NCBIT2T-CHM13v2.0
Apmap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392150,425,000 - 150,450,487 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2150,425,000 - 150,450,487 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382150,583,080 - 150,608,567 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2150,583,080 - 150,608,567 (-)Ensemblmm10GRCm38
MGSCv372150,408,817 - 150,434,259 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362150,274,522 - 150,299,964 (-)NCBIMGSCv36mm8
Celera2151,817,991 - 151,843,400 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.68NCBI
Apmap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,085,169 - 31,108,657 (-)Ensembl
ChiLan1.0NW_00495541531,089,413 - 31,108,657 (-)NCBIChiLan1.0ChiLan1.0
APMAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22125,834,449 - 25,863,933 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12025,831,282 - 25,860,766 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02024,903,723 - 24,933,173 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12025,251,307 - 25,280,938 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2025,251,073 - 25,280,938 (-)EnsemblpanPan2panpan1.1
APMAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1231,148,662 - 1,183,997 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl231,150,778 - 1,184,003 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha231,179,090 - 1,214,161 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0231,391,822 - 1,427,020 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl231,391,824 - 1,427,026 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1231,207,270 - 1,242,280 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0231,337,442 - 1,372,453 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0231,320,381 - 1,355,442 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Apmap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640147,395,716 - 147,431,421 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936620816,123 - 852,827 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936620816,179 - 851,878 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APMAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,768,488 - 30,795,755 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11730,768,485 - 30,795,002 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,917,149 - 34,943,862 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103247048
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_0236660872,163,143 - 2,191,336 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Apmap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624939441,631 - 470,372 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624939441,621 - 468,546 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Apmap
190 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:143
Interacting mature miRNAs:152
Transcripts:ENSRNOT00000008931, ENSRNOT00000040188
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000008931   ⟹   ENSRNOP00000008932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3159,869,451 - 159,897,726 (-)Ensembl
mRatBN7.2 Ensembl3139,409,022 - 139,428,467 (-)Ensembl
Rnor_6.0 Ensembl3146,376,828 - 146,396,346 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000040188   ⟹   ENSRNOP00000043524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3159,870,404 - 159,897,726 (-)Ensembl
mRatBN7.2 Ensembl3139,409,974 - 139,437,248 (-)Ensembl
Rnor_6.0 Ensembl3146,379,447 - 146,396,299 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091310   ⟹   ENSRNOP00000073800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3159,869,451 - 159,897,726 (-)Ensembl
mRatBN7.2 Ensembl3139,409,024 - 139,437,248 (-)Ensembl
Rnor_6.0 Ensembl3146,377,497 - 146,407,252 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099680   ⟹   ENSRNOP00000082165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3159,869,451 - 159,897,427 (-)Ensembl
mRatBN7.2 Ensembl3139,409,022 - 139,437,341 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000138959   ⟹   ENSRNOP00000111325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3159,869,451 - 159,897,726 (-)Ensembl
RefSeq Acc Id: NM_001034003   ⟹   NP_001029175
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83159,869,451 - 159,888,912 (-)NCBI
mRatBN7.23139,409,021 - 139,428,482 (-)NCBI
Rnor_6.03146,376,828 - 146,396,346 (-)NCBI
Rnor_5.03152,738,538 - 152,766,532 (-)NCBI
RGSC_v3.43141,203,219 - 141,222,722 (-)RGD
Celera3138,172,501 - 138,191,087 (-)RGD
Sequence:
RefSeq Acc Id: NM_001398965   ⟹   NP_001385894
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83159,869,451 - 159,897,726 (-)NCBI
mRatBN7.23139,409,021 - 139,437,296 (-)NCBI
RefSeq Acc Id: NM_001398966   ⟹   NP_001385895
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83159,869,451 - 159,897,726 (-)NCBI
mRatBN7.23139,409,021 - 139,437,296 (-)NCBI
RefSeq Acc Id: XM_006235217   ⟹   XP_006235279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83159,869,451 - 159,888,861 (-)NCBI
mRatBN7.23139,409,021 - 139,428,425 (-)NCBI
Rnor_6.03146,376,829 - 146,396,273 (-)NCBI
Rnor_5.03152,738,538 - 152,766,532 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063284288   ⟹   XP_063140358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83159,869,451 - 159,897,726 (-)NCBI
RefSeq Acc Id: XM_063284289   ⟹   XP_063140359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83159,869,451 - 159,897,727 (-)NCBI
RefSeq Acc Id: XM_063284290   ⟹   XP_063140360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83159,869,451 - 159,888,973 (-)NCBI
RefSeq Acc Id: NP_001029175   ⟸   NM_001034003
- Peptide Label: isoform 3
- UniProtKB: Q3KR93 (UniProtKB/Swiss-Prot),   Q7TP48 (UniProtKB/Swiss-Prot),   A0A8L2Q3J0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235279   ⟸   XM_006235217
- Peptide Label: isoform X4
- UniProtKB: A0A8L2Q3J0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008932   ⟸   ENSRNOT00000008931
Ensembl Acc Id: ENSRNOP00000073800   ⟸   ENSRNOT00000091310
Ensembl Acc Id: ENSRNOP00000043524   ⟸   ENSRNOT00000040188
Ensembl Acc Id: ENSRNOP00000082165   ⟸   ENSRNOT00000099680
RefSeq Acc Id: NP_001385895   ⟸   NM_001398966
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001385894   ⟸   NM_001398965
- Peptide Label: isoform 1
- UniProtKB: A6KHF4 (UniProtKB/TrEMBL),   A0A8L2Q3J0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140359   ⟸   XM_063284289
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K6G2 (UniProtKB/TrEMBL),   A0A8L2Q3J0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140358   ⟸   XM_063284288
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZUF8 (UniProtKB/TrEMBL),   A0A8L2Q3J0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140360   ⟸   XM_063284290
- Peptide Label: isoform X3
- UniProtKB: Q7TP48 (UniProtKB/Swiss-Prot),   Q3KR93 (UniProtKB/Swiss-Prot),   A0A8L2Q3J0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000111325   ⟸   ENSRNOT00000138959
Protein Domains
Strictosidine synthase conserved region

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TP48-F1-model_v2 AlphaFold Q7TP48 1-376 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692514
Promoter ID:EPDNEW_R3039
Type:initiation region
Name:Apmap_1
Description:adipocyte plasma membrane associated protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3040  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03146,396,361 - 146,396,421EPDNEW
RGD ID:13692526
Promoter ID:EPDNEW_R3040
Type:initiation region
Name:Apmap_2
Description:adipocyte plasma membrane associated protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3039  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03146,407,232 - 146,407,292EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308874 AgrOrtholog
BioCyc Gene G2FUF-47350 BioCyc
Ensembl Genes ENSRNOG00000006795 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000008931 ENTREZGENE
  ENSRNOT00000091310 ENTREZGENE
  ENSRNOT00000099680 ENTREZGENE
  ENSRNOT00000138959 ENTREZGENE
Gene3D-CATH 2.120.10.30 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7325717 IMAGE-MGC_LOAD
  IMAGE:7372968 IMAGE-MGC_LOAD
InterPro 6-blade_b-propeller_TolB-like UniProtKB/Swiss-Prot
  Strictosidine_synth_cons-reg UniProtKB/Swiss-Prot
KEGG Report rno:366227 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109557 IMAGE-MGC_LOAD
  MGC:125177 IMAGE-MGC_LOAD
NCBI Gene 366227 ENTREZGENE
PANTHER ADIPOCYTE PLASMA MEMBRANE-ASSOCIATED PROTEIN UniProtKB/Swiss-Prot
  STRICTOSIDINE SYNTHASE-RELATED UniProtKB/Swiss-Prot
Pfam SSL_N UniProtKB/Swiss-Prot
  Str_synth UniProtKB/Swiss-Prot
PhenoGen Apmap PhenoGen
RatGTEx ENSRNOG00000006795 RatGTEx
Superfamily-SCOP Calcium-dependent phosphotriesterase UniProtKB/Swiss-Prot
UniProt A0A0G2K6G2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZUF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q3J0 ENTREZGENE, UniProtKB/TrEMBL
  A6KHF4 ENTREZGENE, UniProtKB/TrEMBL
  APMAP_RAT UniProtKB/Swiss-Prot
  D3ZGQ3_RAT UniProtKB/TrEMBL
  Q3KR93 ENTREZGENE
  Q7TP48 ENTREZGENE
UniProt Secondary Q3KR93 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-10 Apmap  adipocyte plasma membrane associated protein  RGD1308874  similar to RIKEN cDNA 2310001A20  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1308874  similar to RIKEN cDNA 2310001A20  RGD1308874_predicted  similar to RIKEN cDNA 2310001A20 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308874_predicted  similar to RIKEN cDNA 2310001A20 (predicted)  LOC366227_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC366227_predicted  similar to RIKEN cDNA 2310001A20 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL