Advanced Search (OLGA)

Gene: Pced1a (PC-esterase domain containing 1A) Rattus norvegicus

Analyze

Symbol:

Pced1a

Name:

PC-esterase domain containing 1A

RGD ID:

1308836

Description:

Orthologous to human PCED1A (PC-esterase domain containing 1A); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Fam113a; family with sequence similarity 113, member A; hypothetical protein LOC296158; LOC296158; MGC109176; PC-esterase domain-containing protein 1A; RGD1308836; similar to chromosome 20 open reading frame 81; uncharacterized protein LOC296158

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PCED1A (PC-esterase domain containing 1A)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Pced1a (PC-esterase domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pced1a (PC-esterase domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PCED1A (PC-esterase domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PCED1A (PC-esterase domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pced1a (PC-esterase domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PCED1A (PC-esterase domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PCED1A (PC-esterase domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pced1a (PC-esterase domain containing 1A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PCED1B (PC-esterase domain containing 1B)	HGNC	OrthoDB
Homo sapiens (human):	STING1 (stimulator of interferon response cGAMP interactor 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PCED1A (PC-esterase domain containing 1A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pced1a (PC-esterase domain containing 1A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fam113 (family with sequence similarity 113)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	D2030.8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pced1a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pced1a	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	138,049,747 - 138,076,107 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	138,067,891 - 138,075,146 (-)	Ensembl				GRCr8
mRatBN7.2	3	117,600,958 - 117,622,992 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	117,616,921 - 117,622,962 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	121,512,090 - 121,520,297 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	130,107,559 - 130,115,770 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	127,768,214 - 127,776,423 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	122,942,178 - 122,947,171 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	122,941,396 - 122,947,075 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	129,442,510 - 129,448,738 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	118,032,237 - 118,036,141 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	116,431,469 - 116,435,373 (-)	NCBI		Celera
RGSC_v3.1	3	117,937,810 - 117,941,714 (-)	NCBI
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Huntington's disease-like 1 (ISO)

pantothenate kinase-associated neurodegeneration (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

cyclosporin A (ISO)

DDE (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

fenvalerate (EXP)

folic acid (ISO)

fulvestrant (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

methimazole (EXP)

okadaic acid (ISO)

paracetamol (EXP,ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

sunitinib (ISO)

temozolomide (ISO)

testosterone (ISO)

titanium dioxide (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
2.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Pced1a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	138,049,747 - 138,076,107 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	138,067,891 - 138,075,146 (-)	Ensembl				GRCr8
mRatBN7.2	3	117,600,958 - 117,622,992 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	117,616,921 - 117,622,962 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	121,512,090 - 121,520,297 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	130,107,559 - 130,115,770 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	127,768,214 - 127,776,423 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	122,942,178 - 122,947,171 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	122,941,396 - 122,947,075 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	129,442,510 - 129,448,738 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	118,032,237 - 118,036,141 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	116,431,469 - 116,435,373 (-)	NCBI		Celera
RGSC_v3.1	3	117,937,810 - 117,941,714 (-)	NCBI
Cytogenetic Map	3	q36	NCBI

PCED1A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	2,835,314 - 2,841,151 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	2,835,314 - 2,841,190 (-)	Ensembl			hg38	GRCh38
GRCh37	20	2,815,960 - 2,821,797 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	2,763,971 - 2,769,332 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	2,763,970 - 2,769,332	NCBI
Celera	20	2,877,226 - 2,882,587 (-)	NCBI		Celera
Cytogenetic Map	20	p13	NCBI
HuRef	20	2,764,150 - 2,770,079 (-)	NCBI		HuRef
CHM1_1	20	2,815,970 - 2,821,899 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	2,865,988 - 2,871,825 (-)	NCBI		T2T-CHM13v2.0

Pced1a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	130,259,603 - 130,266,692 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	130,259,167 - 130,266,621 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	130,417,683 - 130,424,641 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	130,417,247 - 130,424,701 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	130,243,420 - 130,250,377 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	130,109,665 - 130,115,713 (-)	NCBI		MGSCv36	mm8
Celera	2	131,642,139 - 131,649,096 (-)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI
cM Map	2	63.22	NCBI

Pced1a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	13,782,986 - 13,792,914 (-)	Ensembl
ChiLan1.0	NW_004955415	13,786,243 - 13,792,914 (-)	NCBI	ChiLan1.0	ChiLan1.0

PCED1A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	3,807,213 - 3,813,069 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	3,804,040 - 3,809,859 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	2,926,265 - 2,932,094 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	2,689,947 - 2,695,331 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	2,689,947 - 2,695,331 (-)	Ensembl			panPan2	panpan1.1

PCED1A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	18,424,936 - 18,429,698 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	18,424,901 - 18,429,652 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	18,254,188 - 18,258,978 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	18,845,592 - 18,850,382 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	18,845,292 - 18,850,380 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	18,438,791 - 18,443,581 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	18,549,562 - 18,554,352 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	18,878,108 - 18,882,898 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pced1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	167,469,201 - 167,476,942 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	15,900,308 - 15,905,904 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	15,900,549 - 15,905,902 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCED1A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	32,825,998 - 32,831,041 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	32,825,984 - 32,831,045 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	37,196,806 - 37,201,867 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCED1A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	33,522,166 - 33,528,001 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	33,521,667 - 33,527,476 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	10,987,661 - 10,993,587 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pced1a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	3,954,382 - 3,960,322 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624741	3,939,625 - 3,960,760 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Pced1a
63 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	44
Interacting mature miRNAs:	48
Transcripts:	ENSRNOT00000055810
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	84091273	129091273	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	3	115638168	135181505	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	112287552	135181505	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat

Markers in Region

RH141543

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	117,616,935 - 117,617,148 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	122,942,254 - 122,942,466	NCBI	Rnor6.0
Rnor_5.0	3	129,442,615 - 129,442,827	UniSTS	Rnor5.0
RGSC_v3.4	3	118,032,106 - 118,032,318	UniSTS	RGSC3.4
Celera	3	116,431,338 - 116,431,550	UniSTS
RH 3.4 Map	3	1000.3	UniSTS
Cytogenetic Map	3	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001399284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000055810 ⟹ ENSRNOP00000052666

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	138,067,891 - 138,074,874 (-)	Ensembl
mRatBN7.2 Ensembl	3	117,616,921 - 117,622,962 (-)	Ensembl
Rnor_6.0 Ensembl	3	122,942,386 - 122,946,289 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082369 ⟹ ENSRNOP00000069741

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	138,067,891 - 138,075,146 (-)	Ensembl
mRatBN7.2 Ensembl	3	117,617,071 - 117,622,518 (-)	Ensembl
Rnor_6.0 Ensembl	3	122,941,396 - 122,947,075 (-)	Ensembl

RefSeq Acc Id:

NM_001399284 ⟹ NP_001386213

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,067,891 - 138,076,107 (-)	NCBI
mRatBN7.2	3	117,614,776 - 117,622,992 (-)	NCBI

RefSeq Acc Id:

NM_001399285 ⟹ NP_001386214

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,067,893 - 138,075,600 (-)	NCBI
mRatBN7.2	3	117,614,778 - 117,622,485 (-)	NCBI

RefSeq Acc Id:

NM_001399286 ⟹ NP_001386215

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,067,891 - 138,076,107 (-)	NCBI
mRatBN7.2	3	117,614,776 - 117,622,992 (-)	NCBI

RefSeq Acc Id:

XM_006235015 ⟹ XP_006235077

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,070,182 - 138,074,947 (-)	NCBI
mRatBN7.2	3	117,614,778 - 117,621,859 (-)	NCBI
Rnor_6.0	3	122,942,178 - 122,947,171 (-)	NCBI
Rnor_5.0	3	129,442,510 - 129,448,738 (-)	NCBI

Sequence:

show sequence

GCCAGGGAGGGACCACCGCGCATGGGTCATCTTGGAACAGACCGACCTACCTTGATTTCCTGCC
CTCTATCAGCTTATTGGCCTCTCCCTGCAGCTGGTGTCAGTGGCAGCATGGTCTTCTGTTTGGA
AAACAAGATGCCGCACCGCCTGCTGGGAAGCGCCATGGTCCACTTCCATGCCTCGGAAGTCCAG
CAGCTGCTACACAACAAGTTCGTGGTCATTTTGGGGGACTCCATCCAAAGAGCTGTGTATAAGG
ACCTGGTGCTTCTGCTCCAGAAAGACACACTGCTCACGGCTTCCCAGTTAAAAGCCAAGGGGGA
GCTGAGCTTTGAACAGGATCAGCTGGTGGCTGGGGGCCAGCTGGGAGAGCTGCACAACGGGACA
CAGTACCGAGAGGTCCGCCAGTTCTGCTCTGGTTCTGGCCACCACCTTGTGCGCTTCTACTTCC
TCACCCGTGTTTACTCCGAGTACCTTGAGGACGTCTTGGAGGAGCTGTCATATGGACCTGCCCC
TGACCTAGTGATCATCAACTCCTGCCTCTGGGATCTCTCCAGATATGGCCGCTGCTCAATGGAG
AGCTACAGGGAGAACTTGGAACGAGTGTTTGTACGAATGGACCAGGTTTTGCCAGACTCTTGTC
TGCTGGTGTGGAACTTAGCAATGCCTTTGGGGGAGCGTGTCACTGGGGGTTTCCTCCTGCCAGA
GCTCCAGCCCCTTGCAGTCTCTCTGCGACAGGATGTGGTTGAGGGGAACTTCTACAGTGCTACA
TTAGCCGGGAACCACTGTTTTGACGTCTTAGATCTCCACTTCCATTTCCGGCATGCTGTACGTC
ACCGTCATCGAGATGGTGTCCATTGGGACCAGCATGCACACCGCCACCTCTCACACTTACTTCT
GACCCATGTGGCTGATGCCTGGGGTGTGGAGCTACCGAAACATGACCGTCTCCCAGACCCGTGG
ATTGAGGACTGGCCAGAGATGGATCATTCATACCAGGGAAGCCATAAGCAGCCCCCAGACTTCA
GGGAGAAGCCGGCCTTGCCCCTGCTCCCACCTTTCCATTTGCCTCCCCCCATGTCTTTTCCTTA
CCCACTTCAGCCCTCACCACCTCCCTTGTTCCCACCCCTGCCCCAGGATACCCCCTTTTTCCAA
GGCCAGCCCTTTCCACCCTATGAATTCAAATACAATGCAATGGAGGACTTCTCAATGCCAGGAT
GTGGCCCTGGAATGAACTTTGTACCTGGCCCCCTGCCACCATCCGTCTCTGGCCCTGTCTCCCA
TGGTCAACACCGGGGCCCAGTGGTCCACCGGGGCAAGCCACGTTGTGTTCTGAACAACCCCTAC
CATGTACCAAGGATTGGGGGCCCGTGCAGGCATCGACTCAGACACTCAGACAGACTGATCCACA
CATATAAACAGGACAGACGGGGATATGCCCATTCAGGAACATGGCCTGGGTAGGCAGGGTCTTA
GGTTGGGGTTAGGGATGCCAATGACCCTGGAGGGTCTGCTTGATAACCTAGCTGTTGGGGCGGG
GGTGTTCTTGTCCATTGCTGCTATCAATAAATGCATGAAAGGACAGAGCGGCATTCCTGTGTGA
GGGAATGGGTCTCCCAAACCATGACTTTAAGGCATGGGGAAGATGCCCTTGACCTCTATAAACA
ATTTAGAAATCTGTAAATACACTCTTCTACACAGGGCCATCTTCACAAGAACACAGACACACTA
AATAAAGATTCCTAGAGGGTCCCTTGTTATCAACAGGTCTTTGGGACTGGGAAAAATCAA

hide sequence

RefSeq Acc Id:

XM_039104578 ⟹ XP_038960506

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,049,747 - 138,074,947 (-)	NCBI
mRatBN7.2	3	117,600,958 - 117,621,859 (-)	NCBI

RefSeq Acc Id:

XM_063283331 ⟹ XP_063139401

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,070,182 - 138,074,080 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001386213	(Get FASTA)	NCBI Sequence Viewer
	NP_001386214	(Get FASTA)	NCBI Sequence Viewer
	NP_001386215	(Get FASTA)	NCBI Sequence Viewer
	XP_006235077	(Get FASTA)	NCBI Sequence Viewer
	XP_038960506	(Get FASTA)	NCBI Sequence Viewer
	XP_063139401	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89908	(Get FASTA)	NCBI Sequence Viewer
	EDL80190	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000052666
	ENSRNOP00000052666.3
	ENSRNOP00000069741
	ENSRNOP00000069741.2

RefSeq Acc Id:	XP_006235077 ⟸ XM_006235015
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JW48 (UniProtKB/TrEMBL), A6HQ89 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGHLGTDRPTLISCPLSAYWPLPAAGVSGSMVFCLENKMPHRLLGSAMVHFHASEVQQLLHNKF VVILGDSIQRAVYKDLVLLLQKDTLLTASQLKAKGELSFEQDQLVAGGQLGELHNGTQYREVRQ FCSGSGHHLVRFYFLTRVYSEYLEDVLEELSYGPAPDLVIINSCLWDLSRYGRCSMESYRENLE RVFVRMDQVLPDSCLLVWNLAMPLGERVTGGFLLPELQPLAVSLRQDVVEGNFYSATLAGNHCF DVLDLHFHFRHAVRHRHRDGVHWDQHAHRHLSHLLLTHVADAWGVELPKHDRLPDPWIEDWPEM DHSYQGSHKQPPDFREKPALPLLPPFHLPPPMSFPYPLQPSPPPLFPPLPQDTPFFQGQPFPPY EFKYNAMEDFSMPGCGPGMNFVPGPLPPSVSGPVSHGQHRGPVVHRGKPRCVLNNPYHVPRIGG PCRHRLRHSDRLIHTYKQDRRGYAHSGTWPG hide sequence

Ensembl Acc Id:

ENSRNOP00000052666 ⟸ ENSRNOT00000055810

Ensembl Acc Id:

ENSRNOP00000069741 ⟸ ENSRNOT00000082369

RefSeq Acc Id:	XP_038960506 ⟸ XM_039104578
- Peptide Label:	isoform X2

RefSeq Acc Id:	NP_001386215 ⟸ NM_001399286
- Peptide Label:	isoform b

RefSeq Acc Id:	NP_001386213 ⟸ NM_001399284
- Peptide Label:	isoform a
- UniProtKB:	F7FQ71 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001386214 ⟸ NM_001399285
- Peptide Label:	isoform a
- UniProtKB:	F7FQ71 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139401 ⟸ XM_063283331
- Peptide Label:	isoform X3
- UniProtKB:	Q5FVL5 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JW48-F1-model_v2	AlphaFold	A0A0G2JW48	1-449	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308836	AgrOrtholog
BioCyc Gene	G2FUF-47858	BioCyc
Ensembl Genes	ENSRNOG00000021221	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000055810	ENTREZGENE
	ENSRNOT00000055810.4	UniProtKB/TrEMBL
	ENSRNOT00000082369	ENTREZGENE
	ENSRNOT00000082369.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7304556	IMAGE-MGC_LOAD
MGC_CLONE	MGC:109176	IMAGE-MGC_LOAD
NCBI Gene	296158	ENTREZGENE
PANTHER	PC-ESTERASE DOMAIN-CONTAINING PROTEIN 1A	UniProtKB/TrEMBL
	SARCOMA ANTIGEN NY-SAR-23	UniProtKB/TrEMBL
PhenoGen	Pced1a	PhenoGen
RatGTEx	ENSRNOG00000021221	RatGTEx
Superfamily-SCOP	SGNH hydrolase	UniProtKB/TrEMBL
UniProt	A0A0G2JW48	ENTREZGENE, UniProtKB/TrEMBL
	A6HQ89	ENTREZGENE, UniProtKB/TrEMBL
	F7FQ71	ENTREZGENE, UniProtKB/TrEMBL
	Q5FVL5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-07-16	Pced1a	PC-esterase domain containing 1A	Fam113a	family with sequence similarity 113, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Fam113a	family with sequence similarity 113, member A	RGD1308836	similar to chromosome 20 open reading frame 81	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1308836	similar to chromosome 20 open reading frame 81	RGD1308836_predicted	similar to chromosome 20 open reading frame 81 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1308836_predicted	similar to chromosome 20 open reading frame 81 (predicted)	LOC296158_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC296158_predicted	similar to chromosome 20 open reading frame 81 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar