Gpc5 (glypican 5) - Rat Genome Database

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Gene: Gpc5 (glypican 5) Rattus norvegicus
Analyze
Symbol: Gpc5
Name: glypican 5
RGD ID: 1308835
Description: Predicted to be involved in cell migration; positive regulation of canonical Wnt signaling pathway; and regulation of protein localization to membrane. Predicted to be located in plasma membrane and side of membrane. Predicted to be active in cell surface. Orthologous to human GPC5 (glypican 5); PARTICIPATES IN Hedgehog signaling pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: glypican-5; LOC306157
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81598,614,499 - 100,051,285 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1598,646,340 - 100,051,514 (+)EnsemblGRCr8
mRatBN7.21592,207,275 - 93,644,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1592,239,176 - 93,643,282 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1596,146,021 - 97,550,277 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01597,278,871 - 98,683,154 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01594,186,346 - 95,610,977 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.015100,283,131 - 101,776,838 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015103,739,948 - 104,456,749 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.015105,221,065 - 105,224,752 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41599,917,274 - 101,353,034 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1591,103,971 - 92,504,072 (+)NCBICelera
RGSC_v3.11599,932,834 - 100,716,974 (+)NCBI
Cytogenetic Map15q23-q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Dally-like core protein and its mammalian homologues mediate stimulatory and inhibitory effects on Hedgehog signal response. Williams EH, etal., Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5869-74. Epub 2010 Mar 15.
Additional References at PubMed
PMID:25931508  


Genomics

Comparative Map Data
Gpc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81598,614,499 - 100,051,285 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1598,646,340 - 100,051,514 (+)EnsemblGRCr8
mRatBN7.21592,207,275 - 93,644,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1592,239,176 - 93,643,282 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1596,146,021 - 97,550,277 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01597,278,871 - 98,683,154 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01594,186,346 - 95,610,977 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.015100,283,131 - 101,776,838 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015103,739,948 - 104,456,749 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.015105,221,065 - 105,224,752 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41599,917,274 - 101,353,034 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1591,103,971 - 92,504,072 (+)NCBICelera
RGSC_v3.11599,932,834 - 100,716,974 (+)NCBI
Cytogenetic Map15q23-q24NCBI
GPC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381391,398,621 - 92,867,237 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1391,398,621 - 92,873,682 (+)Ensemblhg38GRCh38
GRCh371392,050,875 - 93,519,490 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361390,848,930 - 92,317,491 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341390,848,887 - 92,317,486NCBI
Celera1372,897,866 - 74,366,737 (+)NCBICelera
Cytogenetic Map13q31.3NCBI
HuRef1372,646,702 - 74,116,008 (+)NCBIHuRef
CHM1_11392,019,541 - 93,489,120 (+)NCBICHM1_1
T2T-CHM13v2.01390,601,154 - 92,070,908 (+)NCBIT2T-CHM13v2.0
Gpc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914115,329,640 - 116,762,604 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14115,329,647 - 116,762,591 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3814115,092,201 - 116,525,192 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14115,092,215 - 116,525,179 (+)Ensemblmm10GRCm38
MGSCv3714115,491,437 - 116,924,414 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3614113,974,089 - 115,406,638 (+)NCBIMGSCv36mm8
Celera14113,683,044 - 115,103,380 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1459.43NCBI
Gpc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540416,827,833 - 18,091,256 (-)Ensembl
ChiLan1.0NW_00495540416,824,366 - 18,091,464 (-)NCBIChiLan1.0ChiLan1.0
GPC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21492,946,967 - 94,407,470 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11391,613,624 - 92,365,064 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01372,588,968 - 74,051,961 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11391,755,264 - 93,206,407 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1391,755,623 - 93,205,610 (+)EnsemblpanPan2panpan1.1
GPC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12242,526,426 - 43,873,992 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2242,526,054 - 43,870,405 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2242,382,134 - 43,727,661 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02242,927,701 - 44,302,647 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2242,927,696 - 44,299,055 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12242,610,360 - 43,958,749 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02242,664,714 - 43,999,944 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02242,665,638 - 44,009,293 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gpc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945178,229,811 - 178,459,961 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647217,492,183 - 17,708,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1160,791,363 - 62,147,239 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11160,791,000 - 62,149,911 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21166,666,602 - 67,323,189 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1370,294,405 - 71,729,729 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604626,678,549 - 28,148,799 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624779982,179 - 1,659,418 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624779982,178 - 1,712,772 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpc5
9148 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:85
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000057664
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)158885347095840528Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat

Markers in Region
D15Rat25  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21593,004,744 - 93,004,898 (+)MAPPERmRatBN7.2
Rnor_6.015101,059,401 - 101,059,554NCBIRnor6.0
Rnor_5.015104,508,697 - 104,508,850UniSTSRnor5.0
RGSC_v3.415100,708,158 - 100,708,312RGDRGSC3.4
RGSC_v3.415100,708,159 - 100,708,312UniSTSRGSC3.4
Celera1591,866,627 - 91,866,780UniSTS
RGSC_v3.115100,723,939 - 100,724,092RGD
RH 3.4 Map15632.1UniSTS
RH 3.4 Map15632.1RGD
RH 2.0 Map15519.5RGD
SHRSP x BN Map1558.1398RGD
FHH x ACI Map1570.62RGD
Cytogenetic Map15q24UniSTS
D15Rat26  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81598,754,134 - 98,754,281 (+)Marker Load Pipeline
mRatBN7.21592,346,926 - 92,347,073 (+)MAPPERmRatBN7.2
Rnor_6.015100,390,296 - 100,390,442NCBIRnor6.0
Rnor_5.015103,847,523 - 103,847,669UniSTSRnor5.0
RGSC_v3.415100,026,552 - 100,026,699RGDRGSC3.4
RGSC_v3.415100,026,553 - 100,026,699UniSTSRGSC3.4
Celera1591,210,749 - 91,210,895UniSTS
RGSC_v3.115100,042,332 - 100,042,479RGD
RH 3.4 Map15610.4UniSTS
RH 3.4 Map15610.4RGD
RH 2.0 Map15495.0RGD
SHRSP x BN Map1558.4498RGD
Cytogenetic Map15q24UniSTS
D15Rat103  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81598,885,918 - 98,886,039 (+)Marker Load Pipeline
RGSC_v3.415100,174,510 - 100,174,630UniSTSRGSC3.4
RGSC_v3.415100,174,509 - 100,174,630RGDRGSC3.4
Celera1591,343,541 - 91,343,661UniSTS
RGSC_v3.115100,190,289 - 100,190,410RGD
SHRSP x BN Map1558.5898RGD
SHRSP x BN Map1558.5898UniSTS
Cytogenetic Map15q24UniSTS
D15Rat155  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81599,440,779 - 99,441,019 (+)Marker Load Pipeline
mRatBN7.21593,033,574 - 93,033,814 (+)MAPPERmRatBN7.2
Rnor_6.015101,088,037 - 101,088,275NCBIRnor6.0
Rnor_5.015104,537,328 - 104,537,566UniSTSRnor5.0
RGSC_v3.415100,736,070 - 100,736,310RGDRGSC3.4
RGSC_v3.415100,736,071 - 100,736,310UniSTSRGSC3.4
Celera1591,895,368 - 91,895,607UniSTS
RGSC_v3.115100,751,851 - 100,752,090RGD
RH 3.4 Map15629.4UniSTS
RH 3.4 Map15629.4RGD
RH 2.0 Map15513.5RGD
SHRSP x BN Map1558.1398RGD
Cytogenetic Map15q24UniSTS
D15Rat156  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21593,033,574 - 93,033,803 (+)MAPPERmRatBN7.2
Rnor_6.015101,088,037 - 101,088,264NCBIRnor6.0
Rnor_5.015104,537,328 - 104,537,555UniSTSRnor5.0
RGSC_v3.415100,736,071 - 100,736,299UniSTSRGSC3.4
RGSC_v3.415100,736,070 - 100,736,299RGDRGSC3.4
Celera1591,895,368 - 91,895,596UniSTS
RGSC_v3.115100,751,851 - 100,752,079RGD
RH 3.4 Map15629.3RGD
RH 3.4 Map15629.3UniSTS
RH 2.0 Map15513.5RGD
SHRSP x BN Map1558.5898RGD
Cytogenetic Map15q24UniSTS
D15Got85  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21592,833,535 - 92,833,809 (+)MAPPERmRatBN7.2
Rnor_6.015100,883,950 - 100,884,223NCBIRnor6.0
Rnor_5.015104,334,735 - 104,335,008UniSTSRnor5.0
RGSC_v3.415100,529,949 - 100,530,222RGDRGSC3.4
RGSC_v3.415100,529,949 - 100,530,222UniSTSRGSC3.4
Celera1591,695,859 - 91,696,114UniSTS
RGSC_v3.115100,545,729 - 100,546,002RGD
RH 3.4 Map15625.3RGD
RH 3.4 Map15625.3UniSTS
RH 2.0 Map15509.5RGD
Cytogenetic Map15q24UniSTS
RH131320  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21593,643,644 - 93,643,831 (+)MAPPERmRatBN7.2
Rnor_6.015101,776,429 - 101,776,615NCBIRnor6.0
Rnor_5.015105,224,343 - 105,224,529UniSTSRnor5.0
RGSC_v3.415101,352,625 - 101,352,811UniSTSRGSC3.4
Celera1592,503,663 - 92,503,849UniSTS
RH 3.4 Map15634.3UniSTS
Cytogenetic Map15q24UniSTS
BF388001  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21593,243,982 - 93,244,162 (+)MAPPERmRatBN7.2
Rnor_6.015101,331,881 - 101,332,060NCBIRnor6.0
Rnor_5.015104,779,095 - 104,779,274UniSTSRnor5.0
RGSC_v3.415100,949,126 - 100,949,305UniSTSRGSC3.4
Celera1592,105,031 - 92,105,210UniSTS
RH 3.4 Map15618.2UniSTS
Cytogenetic Map15q24UniSTS
BF402049  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21592,969,048 - 92,969,146 (+)MAPPERmRatBN7.2
Rnor_6.015101,020,468 - 101,020,564NCBIRnor6.0
Celera1591,831,069 - 91,831,166UniSTS
RH 3.4 Map15629.5UniSTS
Cytogenetic Map15q24UniSTS
AU048228  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21592,790,045 - 92,790,330 (+)MAPPERmRatBN7.2
Rnor_6.015100,840,300 - 100,840,588NCBIRnor6.0
Rnor_5.015104,291,085 - 104,291,373UniSTSRnor5.0
RGSC_v3.415100,486,451 - 100,486,739UniSTSRGSC3.4
Celera1591,652,335 - 91,652,621UniSTS
Cytogenetic Map15q24UniSTS
BF415743  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21592,241,621 - 92,241,736 (+)MAPPERmRatBN7.2
Rnor_6.015100,285,207 - 100,285,321NCBIRnor6.0
Rnor_5.015103,742,024 - 103,742,138UniSTSRnor5.0
RGSC_v3.41599,919,352 - 99,919,466UniSTSRGSC3.4
Celera1591,106,051 - 91,106,165UniSTS
RH 3.4 Map15608.4UniSTS
Cytogenetic Map15q24UniSTS
D5S680  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21593,613,562 - 93,614,912 (+)MAPPERmRatBN7.2
mRatBN7.21593,613,925 - 93,614,912 (+)MAPPERmRatBN7.2
Rnor_6.015101,746,315 - 101,747,700NCBIRnor6.0
Rnor_6.015101,746,716 - 101,747,700NCBIRnor6.0
Rnor_5.015105,194,630 - 105,195,614UniSTSRnor5.0
Rnor_5.015105,194,229 - 105,195,614UniSTSRnor5.0
RGSC_v3.415101,322,911 - 101,323,895UniSTSRGSC3.4
Celera1592,473,850 - 92,474,931UniSTS
Cytogenetic Map15q24UniSTS
AFM350VD1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21592,537,764 - 92,538,202 (+)MAPPERmRatBN7.2
mRatBN7.2147,701,468 - 7,702,102 (+)MAPPERmRatBN7.2
Rnor_6.0149,276,013 - 9,276,645NCBIRnor6.0
Rnor_6.015100,586,361 - 100,586,798NCBIRnor6.0
Rnor_5.015104,043,439 - 104,043,876UniSTSRnor5.0
Rnor_5.0149,237,569 - 9,238,201UniSTSRnor5.0
RGSC_v3.4148,954,774 - 8,955,406UniSTSRGSC3.4
RGSC_v3.415100,232,059 - 100,232,496UniSTSRGSC3.4
Celera1591,402,387 - 91,402,824UniSTS
Celera147,822,897 - 7,823,529UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map14p22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
2 12 27 24 62 40 5 24 20 10 9 9

Sequence


Ensembl Acc Id: ENSRNOT00000098995   ⟹   ENSRNOP00000083633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1598,646,340 - 100,000,772 (+)Ensembl
mRatBN7.2 Ensembl1592,239,176 - 92,956,023 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112165   ⟹   ENSRNOP00000089971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1598,646,414 - 99,437,511 (+)Ensembl
mRatBN7.2 Ensembl1592,239,176 - 93,643,282 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116613   ⟹   ENSRNOP00000080406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1598,646,340 - 98,981,254 (+)Ensembl
mRatBN7.2 Ensembl1592,239,176 - 92,574,052 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000131898   ⟹   ENSRNOP00000108316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1598,646,340 - 100,051,384 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000147986   ⟹   ENSRNOP00000108934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1598,646,369 - 100,000,777 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000161833   ⟹   ENSRNOP00000104282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1598,646,340 - 100,051,514 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000168519   ⟹   ENSRNOP00000107793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1598,646,344 - 99,395,893 (+)Ensembl
RefSeq Acc Id: NM_001107285   ⟹   NP_001100755
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81598,646,758 - 100,051,285 (+)NCBI
mRatBN7.21592,239,546 - 93,644,054 (+)NCBI
Rnor_6.015100,283,131 - 101,776,838 (+)NCBI
Rnor_5.015103,739,948 - 104,456,749 (+)NCBI
Rnor_5.015105,221,065 - 105,224,752 (+)NCBI
RGSC_v3.41599,917,274 - 101,353,034 (+)RGD
Celera1591,103,971 - 92,504,072 (+)RGD
Sequence:
RefSeq Acc Id: XM_039093412   ⟹   XP_038949340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81598,646,334 - 99,017,256 (+)NCBI
mRatBN7.21592,238,781 - 92,610,057 (+)NCBI
RefSeq Acc Id: XM_039093413   ⟹   XP_038949341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81598,614,499 - 100,051,275 (+)NCBI
mRatBN7.21592,207,277 - 93,644,054 (+)NCBI
RefSeq Acc Id: XM_039093414   ⟹   XP_038949342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81598,614,499 - 100,051,275 (+)NCBI
mRatBN7.21592,207,275 - 93,644,054 (+)NCBI
RefSeq Acc Id: XM_063274345   ⟹   XP_063130415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81598,615,064 - 100,051,275 (+)NCBI
RefSeq Acc Id: NP_001100755   ⟸   NM_001107285
- Peptide Label: precursor
- UniProtKB: A0A8I6ACQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038949342   ⟸   XM_039093414
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038949341   ⟸   XM_039093413
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038949340   ⟸   XM_039093412
- Peptide Label: isoform X1
- UniProtKB: A6HUE6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080406   ⟸   ENSRNOT00000116613
Ensembl Acc Id: ENSRNOP00000089971   ⟸   ENSRNOT00000112165
Ensembl Acc Id: ENSRNOP00000083633   ⟸   ENSRNOT00000098995
RefSeq Acc Id: XP_063130415   ⟸   XM_063274345
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000108316   ⟸   ENSRNOT00000131898
Ensembl Acc Id: ENSRNOP00000107793   ⟸   ENSRNOT00000168519
Ensembl Acc Id: ENSRNOP00000104282   ⟸   ENSRNOT00000161833
Ensembl Acc Id: ENSRNOP00000108934   ⟸   ENSRNOT00000147986

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308835 AgrOrtholog
BioCyc Gene G2FUF-12482 BioCyc
Ensembl Genes ENSRNOG00000071105 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000098995.1 UniProtKB/TrEMBL
  ENSRNOT00000112165.1 UniProtKB/TrEMBL
  ENSRNOT00000116613.1 UniProtKB/TrEMBL
  ENSRNOT00000161833 ENTREZGENE
InterPro Glypican UniProtKB/TrEMBL
  Glypican_CS UniProtKB/TrEMBL
NCBI Gene 306157 ENTREZGENE
PANTHER PTHR10822 UniProtKB/TrEMBL
  PTHR10822:SF12 UniProtKB/TrEMBL
Pfam Glypican UniProtKB/TrEMBL
PhenoGen Gpc5 PhenoGen
PROSITE GLYPICAN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000071105 RatGTEx
UniProt A0A8I5ZPZ6_RAT UniProtKB/TrEMBL
  A0A8I5ZXF3_RAT UniProtKB/TrEMBL
  A0A8I6ACQ6 ENTREZGENE, UniProtKB/TrEMBL
  A6HUE6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Gpc5  glypican 5   Gpc5_predicted  glypican 5 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Gpc5_predicted  glypican 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED