Ddx4 (DEAD-box helicase 4) - Rat Genome Database

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Gene: Ddx4 (DEAD-box helicase 4) Rattus norvegicus
Analyze
Symbol: Ddx4
Name: DEAD-box helicase 4
RGD ID: 1308793
Description: Predicted to enable several functions, including ATP hydrolysis activity; RNA helicase activity; and molecular condensate scaffold activity. Involved in response to benzoic acid; response to retinoic acid; and spermatogenesis. Located in chromatoid body and perinuclear region of cytoplasm. Orthologous to human DDX4 (DEAD-box helicase 4); INTERACTS WITH 17alpha-ethynylestradiol; 3-chloropropane-1,2-diol; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4; DEAD box protein 4; LOC310090; probable ATP-dependent RNA helicase DDX4; putative ATP-dependent RNA helicase DDX4; RVLG; vasa homolog; vasa-like gene protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2244,227,946 - 44,282,867 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl244,227,946 - 44,282,723 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx251,343,866 - 51,398,222 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0249,402,306 - 49,456,662 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0244,274,677 - 44,329,399 (-)NCBIRnor_WKY
Rnor_6.0244,447,610 - 44,504,263 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl244,447,573 - 44,504,354 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0263,489,384 - 63,545,657 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4243,964,552 - 44,022,919 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1243,783,992 - 43,955,157 (-)NCBI
Celera240,006,460 - 40,062,288 (-)NCBICelera
Cytogenetic Map2q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatoid body  (IDA,ISO)
cytoplasm  (ISO,ISS)
nucleus  (IBA,ISO)
P granule  (IBA)
perinuclear region of cytoplasm  (IDA,ISO)
pi-body  (ISO,ISS)
piP-body  (ISO,ISS)
ribonucleoprotein complex  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. DDX6 localizes to nuage structures and the annulus of mammalian spermatogenic cells. Kawahara C, etal., Histochem Cell Biol. 2014 Jan;141(1):111-21. doi: 10.1007/s00418-013-1153-2. Epub 2013 Oct 20.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. All-Trans Retinoic Acid Disrupts Development in Ex Vivo Cultured Fetal Rat Testes. I: Altered Seminiferous Cord Maturation and Testicular Cell Fate. Spade DJ, etal., Toxicol Sci. 2019 Feb 1;167(2):546-558. doi: 10.1093/toxsci/kfy260.
7. All-trans Retinoic Acid Disrupts Development in Ex Vivo Cultured Fetal Rat Testes. II: Modulation of Mono-(2-ethylhexyl) Phthalate Toxicity. Spade DJ, etal., Toxicol Sci. 2019 Mar 1;168(1):149-159. doi: 10.1093/toxsci/kfy283.
Additional References at PubMed
PMID:7857296   PMID:10766740   PMID:10781947   PMID:12798292   PMID:14736746   PMID:15749075   PMID:15789443   PMID:17141210   PMID:20011505   PMID:20439430   PMID:21034600   PMID:21421998  
PMID:21991325   PMID:22792342   PMID:22993404   PMID:28633017   PMID:32020412  


Genomics

Comparative Map Data
Ddx4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2244,227,946 - 44,282,867 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl244,227,946 - 44,282,723 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx251,343,866 - 51,398,222 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0249,402,306 - 49,456,662 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0244,274,677 - 44,329,399 (-)NCBIRnor_WKY
Rnor_6.0244,447,610 - 44,504,263 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl244,447,573 - 44,504,354 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0263,489,384 - 63,545,657 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4243,964,552 - 44,022,919 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1243,783,992 - 43,955,157 (-)NCBI
Celera240,006,460 - 40,062,288 (-)NCBICelera
Cytogenetic Map2q14NCBI
DDX4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38555,738,061 - 55,817,157 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl555,738,017 - 55,817,157 (+)EnsemblGRCh38hg38GRCh38
GRCh37555,033,889 - 55,112,985 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36555,070,533 - 55,148,362 (+)NCBINCBI36Build 36hg18NCBI36
Build 34555,070,532 - 55,148,363NCBI
Celera551,987,565 - 52,066,696 (+)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef552,007,082 - 52,086,270 (+)NCBIHuRef
CHM1_1555,038,024 - 55,117,130 (+)NCBICHM1_1
T2T-CHM13v2.0556,566,349 - 56,645,450 (+)NCBIT2T-CHM13v2.0
Ddx4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913112,734,867 - 112,790,342 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13112,734,867 - 112,789,009 (-)EnsemblGRCm39 Ensembl
GRCm3813112,598,333 - 112,652,633 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13112,598,333 - 112,652,475 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713113,388,541 - 113,442,518 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613113,719,214 - 113,773,179 (-)NCBIMGSCv36mm8
Celera13116,904,120 - 116,961,259 (-)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.87NCBI
Ddx4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544611,967,322 - 12,024,587 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544611,967,222 - 12,025,537 (-)NCBIChiLan1.0ChiLan1.0
DDX4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1559,828,631 - 59,910,684 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl559,827,031 - 59,910,681 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0558,202,037 - 58,286,518 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
DDX4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1243,026,367 - 43,109,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl243,027,296 - 43,109,526 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha240,072,766 - 40,155,910 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0243,492,081 - 43,575,330 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl243,491,353 - 43,663,722 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1240,569,844 - 40,653,361 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0241,371,493 - 41,456,022 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0242,192,815 - 42,275,988 (+)NCBIUU_Cfam_GSD_1.0
Ddx4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213203,089,227 - 203,142,238 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648012,027,357 - 12,077,689 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493648012,027,117 - 12,078,716 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDX4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1634,858,368 - 34,983,699 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11634,879,701 - 34,983,701 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21637,028,191 - 37,080,883 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DDX4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1451,984,753 - 52,058,425 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl451,986,338 - 52,057,813 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666049860,626 - 933,873 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ddx4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247593,455,543 - 3,567,605 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247593,454,850 - 3,568,531 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ddx4
250 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:48
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000013035
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
12879863Bp402Blood pressure QTL 4020.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24112578956532139Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)243162366111362592Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat

Markers in Region
AV206478  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2244,228,017 - 44,228,116 (+)MAPPERmRatBN7.2
Rnor_6.0244,447,682 - 44,447,780NCBIRnor6.0
Rnor_5.0263,489,456 - 63,489,554UniSTSRnor5.0
RGSC_v3.4243,964,624 - 43,964,722UniSTSRGSC3.4
Celera240,006,532 - 40,006,630UniSTS
Cytogenetic Map2q14UniSTS
PMC208779P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2244,247,004 - 44,247,594 (+)MAPPERmRatBN7.2
Rnor_6.0244,466,671 - 44,467,260NCBIRnor6.0
Rnor_5.0263,508,577 - 63,509,166UniSTSRnor5.0
RGSC_v3.4243,985,061 - 43,985,650UniSTSRGSC3.4
Celera240,026,103 - 40,026,692UniSTS
Cytogenetic Map2q14UniSTS
Ddx4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2244,247,004 - 44,248,663 (+)MAPPERmRatBN7.2
Rnor_6.0244,466,671 - 44,468,329NCBIRnor6.0
Rnor_5.0263,508,577 - 63,510,235UniSTSRnor5.0
RGSC_v3.4243,985,061 - 43,986,719UniSTSRGSC3.4
Celera240,026,103 - 40,027,761UniSTS
Cytogenetic Map2q14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 26
Low 2 2 1 1 8 2
Below cutoff 1 13 9 2 11 2 1 2 13 33 5 10 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide GQ243745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ013737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S75275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000013035   ⟹   ENSRNOP00000013035
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl244,227,946 - 44,281,942 (-)Ensembl
Rnor_6.0 Ensembl244,447,573 - 44,504,354 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108725   ⟹   ENSRNOP00000085415
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl244,227,948 - 44,282,723 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117202   ⟹   ENSRNOP00000083389
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl244,227,948 - 44,282,723 (-)Ensembl
RefSeq Acc Id: NM_001077647   ⟹   NP_001071115
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,227,946 - 44,282,723 (-)NCBI
Rnor_6.0244,447,610 - 44,504,146 (-)NCBI
Rnor_5.0263,489,384 - 63,545,657 (-)NCBI
RGSC_v3.4243,964,552 - 44,022,919 (-)RGD
Celera240,006,460 - 40,062,288 (-)RGD
Sequence:
RefSeq Acc Id: XM_039102182   ⟹   XP_038958110
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,227,946 - 44,282,867 (-)NCBI
RefSeq Acc Id: XM_039102183   ⟹   XP_038958111
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,227,946 - 44,282,739 (-)NCBI
RefSeq Acc Id: XM_039102184   ⟹   XP_038958112
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,227,946 - 44,282,865 (-)NCBI
RefSeq Acc Id: XM_039102185   ⟹   XP_038958113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,227,946 - 44,282,867 (-)NCBI
RefSeq Acc Id: XM_039102186   ⟹   XP_038958114
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,227,946 - 44,282,867 (-)NCBI
RefSeq Acc Id: XM_039102187   ⟹   XP_038958115
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,227,946 - 44,282,866 (-)NCBI
RefSeq Acc Id: XM_039102188   ⟹   XP_038958116
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,227,946 - 44,282,867 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001071115   ⟸   NM_001077647
- UniProtKB: A0A8I5ZVB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000013035   ⟸   ENSRNOT00000013035
RefSeq Acc Id: XP_038958116   ⟸   XM_039102188
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038958113   ⟸   XM_039102185
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958114   ⟸   XM_039102186
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038958110   ⟸   XM_039102182
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958115   ⟸   XM_039102187
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZVB9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958112   ⟸   XM_039102184
- Peptide Label: isoform X2
- UniProtKB: H9BFH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958111   ⟸   XM_039102183
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000085415   ⟸   ENSRNOT00000108725
RefSeq Acc Id: ENSRNOP00000083389   ⟸   ENSRNOT00000117202
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q64060-F1-model_v2 AlphaFold Q64060 1-713 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691135
Promoter ID:EPDNEW_R1660
Type:initiation region
Name:Ddx4_1
Description:DEAD-box helicase 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0244,504,226 - 44,504,286EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308793 AgrOrtholog
BioCyc Gene G2FUF-54393 BioCyc
Ensembl Genes ENSRNOG00000026686 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013035 ENTREZGENE
  ENSRNOP00000013035.7 UniProtKB/TrEMBL
  ENSRNOP00000083389 ENTREZGENE
  ENSRNOP00000083389.1 UniProtKB/TrEMBL
  ENSRNOP00000085415.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013035 ENTREZGENE
  ENSRNOT00000013035.7 UniProtKB/TrEMBL
  ENSRNOT00000108725.1 UniProtKB/TrEMBL
  ENSRNOT00000117202 ENTREZGENE
  ENSRNOT00000117202.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA-helicase_DEAD-box_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA_helicase_DEAD_Q_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:310090 UniProtKB/Swiss-Prot
NCBI Gene 310090 ENTREZGENE
Pfam DEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ddx4 PhenoGen
PROSITE DEAD_ATP_HELICASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Q_MOTIF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DEXDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZVB9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A3A6_RAT UniProtKB/TrEMBL
  C7E3F3_RAT UniProtKB/TrEMBL
  DDX4_RAT UniProtKB/Swiss-Prot
  F1LQD1_RAT UniProtKB/TrEMBL
  H9BFH0 ENTREZGENE, UniProtKB/TrEMBL
  Q64060 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-13 Ddx4  DEAD-box helicase 4  Ddx4  DEAD (Asp-Glu-Ala-Asp) box polypeptide 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Ddx4  DEAD (Asp-Glu-Ala-Asp) box polypeptide 4  Ddx4_predicted  DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ddx4_predicted  DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED