Atp11a (ATPase phospholipid transporting 11A) - Rat Genome Database

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Gene: Atp11a (ATPase phospholipid transporting 11A) Rattus norvegicus
Analyze
Symbol: Atp11a
Name: ATPase phospholipid transporting 11A
RGD ID: 1308688
Description: Predicted to enable phosphatidylethanolamine flippase activity and phosphatidylserine flippase activity. Predicted to be involved in phospholipid translocation and positive regulation of myotube differentiation. Predicted to act upstream of or within in utero embryonic development. Predicted to be located in Golgi apparatus. Predicted to be part of phospholipid-translocating ATPase complex. Predicted to be active in endoplasmic reticulum; plasma membrane; and recycling endosome. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 84 and hypomyelinating leukodystrophy 24. Orthologous to human ATP11A (ATPase phospholipid transporting 11A); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATPase, class VI, type 11A; LOC306600; phospholipid-transporting ATPase IH; probable phospholipid-transporting ATPase IH; Ua20; UA20 protein-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81683,359,884 - 83,469,807 (-)NCBIGRCr8
GRCr8 Ensembl1683,359,884 - 83,469,767 (-)EnsemblGRCr8 Ensembl
mRatBN7.21676,657,752 - 76,767,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,657,752 - 76,767,640 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1681,938,281 - 82,048,154 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01685,390,878 - 85,500,747 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01680,640,040 - 80,750,901 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,990,340 - 82,100,222 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1681,990,340 - 82,100,222 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01681,476,069 - 81,586,090 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41681,514,979 - 81,624,861 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1674,464,012 - 74,573,797 (-)NCBICelera
RGSC_v3.11681,501,632 - 81,609,375 (-)NCBI
Cytogenetic Map16q12.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bucladesine  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dichloroacetic acid  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
diquat  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
finasteride  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glyphosate  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
medroxyprogesterone acetate  (ISO)
methapyrilene  (EXP,ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nefazodone  (EXP)
nickel sulfate  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pirinixic acid  (ISO)
rac-lactic acid  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
T-2 toxin  (EXP)
tetrachloromethane  (ISO)
tetracycline  (ISO)
tetraphene  (ISO)
titanium dioxide  (ISO)
tributylstannane  (ISO)
Triptolide  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17897319   PMID:19946888   PMID:21914794   PMID:27996060  


Genomics

Comparative Map Data
Atp11a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81683,359,884 - 83,469,807 (-)NCBIGRCr8
GRCr8 Ensembl1683,359,884 - 83,469,767 (-)EnsemblGRCr8 Ensembl
mRatBN7.21676,657,752 - 76,767,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,657,752 - 76,767,640 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1681,938,281 - 82,048,154 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01685,390,878 - 85,500,747 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01680,640,040 - 80,750,901 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,990,340 - 82,100,222 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1681,990,340 - 82,100,222 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01681,476,069 - 81,586,090 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41681,514,979 - 81,624,861 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1674,464,012 - 74,573,797 (-)NCBICelera
RGSC_v3.11681,501,632 - 81,609,375 (-)NCBI
Cytogenetic Map16q12.5NCBI
ATP11A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813112,690,038 - 112,887,168 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13112,690,038 - 112,887,168 (+)EnsemblGRCh38hg38GRCh38
GRCh3713113,344,352 - 113,541,482 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613112,392,644 - 112,589,483 (+)NCBINCBI36Build 36hg18NCBI36
Build 3413112,392,643 - 112,589,467NCBI
Celera1394,169,962 - 94,366,346 (+)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1393,786,589 - 93,982,360 (+)NCBIHuRef
CHM1_113113,313,695 - 113,510,486 (+)NCBICHM1_1
T2T-CHM13v2.013111,938,073 - 112,137,143 (+)NCBIT2T-CHM13v2.0
Atp11a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39812,807,016 - 12,918,728 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl812,807,014 - 12,918,728 (+)EnsemblGRCm39 Ensembl
GRCm38812,757,016 - 12,868,728 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl812,757,014 - 12,868,728 (+)EnsemblGRCm38mm10GRCm38
MGSCv37812,757,016 - 12,868,728 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36812,757,201 - 12,865,150 (+)NCBIMGSCv36mm8
Celera812,924,468 - 13,036,528 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
Atp11a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955404820,263 - 912,351 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955404820,788 - 906,531 (-)NCBIChiLan1.0ChiLan1.0
ATP11A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214114,183,918 - 114,379,070 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113112,869,802 - 113,063,779 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01393,822,102 - 94,016,837 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113112,999,645 - 113,096,015 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13112,997,252 - 113,091,167 (+)Ensemblpanpan1.1panPan2
ATP11A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12260,302,098 - 60,431,070 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2260,302,309 - 60,428,080 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2260,015,066 - 60,143,830 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02260,929,759 - 61,058,315 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2260,929,048 - 61,056,821 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12260,428,554 - 60,555,405 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02260,424,306 - 60,552,852 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02260,458,948 - 60,587,815 (+)NCBIUU_Cfam_GSD_1.0
Atp11a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945195,201,759 - 195,286,188 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936472669,155 - 730,035 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936472665,967 - 750,396 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP11A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,293,469 - 78,402,083 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11178,292,734 - 78,402,108 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ATP11A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1390,709,348 - 90,893,610 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl390,709,298 - 90,887,360 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604647,630,891 - 47,883,537 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp11a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624793903,847 - 998,436 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624793904,320 - 998,413 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp11a
615 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:503
Count of miRNA genes:251
Interacting mature miRNAs:328
Transcripts:ENSRNOT00000023163
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat

Markers in Region
AI012433  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21676,658,177 - 76,658,315 (+)MAPPERmRatBN7.2
Rnor_6.01681,990,766 - 81,990,903NCBIRnor6.0
Rnor_5.01681,476,495 - 81,476,632UniSTSRnor5.0
RGSC_v3.41681,515,405 - 81,515,542UniSTSRGSC3.4
Celera1674,464,438 - 74,464,575UniSTS
RH 3.4 Map16745.3UniSTS
Cytogenetic Map16q12.5UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 11 49 113 91 90 59 25 59 6 218 97 11 93 45 60 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC096938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC117058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY064511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000023163   ⟹   ENSRNOP00000023163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1683,359,884 - 83,469,767 (-)Ensembl
mRatBN7.2 Ensembl1676,657,752 - 76,767,640 (-)Ensembl
Rnor_6.0 Ensembl1681,990,340 - 82,100,222 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089447   ⟹   ENSRNOP00000074747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1683,366,556 - 83,460,594 (-)Ensembl
mRatBN7.2 Ensembl1676,660,572 - 76,767,640 (-)Ensembl
Rnor_6.0 Ensembl1681,995,235 - 82,099,991 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117454   ⟹   ENSRNOP00000081780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1683,365,744 - 83,469,203 (-)Ensembl
mRatBN7.2 Ensembl1676,660,572 - 76,767,640 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000139085   ⟹   ENSRNOP00000102382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1683,359,884 - 83,469,765 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000152024   ⟹   ENSRNOP00000100719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1683,359,884 - 83,469,765 (-)Ensembl
RefSeq Acc Id: NM_001107324   ⟹   NP_001100794
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,359,884 - 83,469,767 (-)NCBI
mRatBN7.21676,657,752 - 76,767,640 (-)NCBI
Rnor_6.01681,990,340 - 82,100,222 (-)NCBI
Rnor_5.01681,476,069 - 81,586,090 (-)NCBI
RGSC_v3.41681,514,979 - 81,624,861 (-)RGD
Celera1674,464,012 - 74,573,797 (-)RGD
Sequence:
RefSeq Acc Id: NM_001415017   ⟹   NP_001401946
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,359,884 - 83,469,765 (-)NCBI
mRatBN7.21676,657,752 - 76,767,638 (-)NCBI
RefSeq Acc Id: NM_001415018   ⟹   NP_001401947
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,359,884 - 83,469,765 (-)NCBI
mRatBN7.21676,657,752 - 76,767,638 (-)NCBI
RefSeq Acc Id: XM_017600150   ⟹   XP_017455639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,359,884 - 83,469,034 (-)NCBI
mRatBN7.21676,657,752 - 76,766,907 (-)NCBI
Rnor_6.01681,990,340 - 82,099,490 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600152   ⟹   XP_017455641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,363,564 - 83,469,034 (-)NCBI
mRatBN7.21676,657,752 - 76,766,907 (-)NCBI
Rnor_6.01681,990,340 - 82,099,490 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600153   ⟹   XP_017455642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,363,566 - 83,469,034 (-)NCBI
mRatBN7.21676,661,558 - 76,766,907 (-)NCBI
Rnor_6.01681,994,064 - 82,099,490 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063275462   ⟹   XP_063131532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,366,545 - 83,469,368 (-)NCBI
RefSeq Acc Id: XM_063275463   ⟹   XP_063131533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,366,545 - 83,469,807 (-)NCBI
RefSeq Acc Id: XM_063275464   ⟹   XP_063131534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,359,884 - 83,469,330 (-)NCBI
RefSeq Acc Id: XM_063275465   ⟹   XP_063131535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81683,359,884 - 83,465,797 (-)NCBI
RefSeq Acc Id: NP_001100794   ⟸   NM_001107324
- Peptide Label: isoform 1
- UniProtKB: D4A7K5 (UniProtKB/TrEMBL),   A6IWL3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455639   ⟸   XM_017600150
- Peptide Label: isoform X1
- UniProtKB: A6IWL3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455641   ⟸   XM_017600152
- Peptide Label: isoform X2
- UniProtKB: A6IWL3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455642   ⟸   XM_017600153
- Peptide Label: isoform X4
- UniProtKB: A6IWL3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074747   ⟸   ENSRNOT00000089447
Ensembl Acc Id: ENSRNOP00000023163   ⟸   ENSRNOT00000023163
Ensembl Acc Id: ENSRNOP00000081780   ⟸   ENSRNOT00000117454
RefSeq Acc Id: NP_001401946   ⟸   NM_001415017
- Peptide Label: isoform 2
- UniProtKB: A6IWL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001401947   ⟸   NM_001415018
- Peptide Label: isoform 3
- UniProtKB: A0A0G2K8V1 (UniProtKB/TrEMBL),   A6IWL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131534   ⟸   XM_063275464
- Peptide Label: isoform X6
- UniProtKB: A6IWL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131535   ⟸   XM_063275465
- Peptide Label: isoform X6
- UniProtKB: A6IWL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131533   ⟸   XM_063275463
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZTL7 (UniProtKB/TrEMBL),   A6IWL2 (UniProtKB/TrEMBL),   A6IWL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131532   ⟸   XM_063275462
- Peptide Label: isoform X3
- UniProtKB: A6IWL3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000100719   ⟸   ENSRNOT00000152024
Ensembl Acc Id: ENSRNOP00000102382   ⟸   ENSRNOT00000139085
Protein Domains
P-type ATPase C-terminal   P-type ATPase N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7K5-F1-model_v2 AlphaFold D4A7K5 1-1187 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700238
Promoter ID:EPDNEW_R10761
Type:initiation region
Name:Atp11a_1
Description:ATPase phospholipid transporting 11A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01682,100,174 - 82,100,234EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308688 AgrOrtholog
BioCyc Gene G2FUF-10694 BioCyc
Ensembl Genes ENSRNOG00000017154 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023163 ENTREZGENE
  ENSRNOT00000023163.7 UniProtKB/TrEMBL
  ENSRNOT00000089447 ENTREZGENE
  ENSRNOT00000089447.2 UniProtKB/TrEMBL
  ENSRNOT00000117454 ENTREZGENE
  ENSRNOT00000117454.1 UniProtKB/TrEMBL
  ENSRNOT00000139085 ENTREZGENE
  ENSRNOT00000152024 ENTREZGENE
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
InterPro ATPase_P-typ_cyto_domN UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_Plipid-transp UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A UniProtKB/TrEMBL
  Cation_transp_P_typ_ATPase UniProtKB/TrEMBL
  HAD-like_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  P-type_ATPase_N UniProtKB/TrEMBL
  P_typ_ATPase_c UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
KEGG Report rno:306600 UniProtKB/TrEMBL
NCBI Gene 306600 ENTREZGENE
PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE UniProtKB/TrEMBL
  PTHR24092:SF33 UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  PhoLip_ATPase_C UniProtKB/TrEMBL
  PhoLip_ATPase_N UniProtKB/TrEMBL
PhenoGen Atp11a PhenoGen
PRINTS CATATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017154 RatGTEx
Superfamily-SCOP ATPase_cation_domN UniProtKB/TrEMBL
  HAD-like_dom UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A0G2K8V1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZTL7 ENTREZGENE, UniProtKB/TrEMBL
  A6IWL2 ENTREZGENE, UniProtKB/TrEMBL
  A6IWL3 ENTREZGENE, UniProtKB/TrEMBL
  D4A7K5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Atp11a  ATPase phospholipid transporting 11A  Atp11a  ATPase, class VI, type 11A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Atp11a  ATPase, class VI, type 11A   Atp11a_predicted  ATPase, class VI, type 11A (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Atp11a_predicted  ATPase, class VI, type 11A (predicted)      Symbol and Name status set to approved 70820 APPROVED