Nlrp3 (NLR family, pyrin domain containing 3) - Rat Genome Database

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Gene: Nlrp3 (NLR family, pyrin domain containing 3) Rattus norvegicus
Analyze
Symbol: Nlrp3
Name: NLR family, pyrin domain containing 3
RGD ID: 1308314
Description: Predicted to enable several functions, including ATP hydrolysis activity; adenyl ribonucleotide binding activity; and cysteine-type endopeptidase activator activity. Involved in leukocyte migration involved in inflammatory response; response to ethanol; and response to organic cyclic compound. Predicted to be located in several cellular components, including Golgi membrane; interphase microtubule organizing center; and mitochondrion. Predicted to be part of NLRP3 inflammasome complex. Predicted to be active in cytosol and membrane. Biomarker of alcoholic hepatitis and myocardial infarction. Human ortholog(s) of this gene implicated in CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome 1; and urticaria. Orthologous to human NLRP3 (NLR family pyrin domain containing 3); PARTICIPATES IN interleukin-1 signaling pathway; influenza A pathway; NOD-like receptor signaling pathway; INTERACTS WITH (+)-taxifolin; (R)-carnitine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Cias1; cold autoinflammatory syndrome 1; cold autoinflammatory syndrome 1 homolog; cold autoinflammatory syndrome 1 homolog (human); cold autoinflammatory syndrome 1 protein homolog; cryopyrin; LOC287362; mast cell maturation-associated-inducible protein 1; NACHT, LRR and PYD domains-containing protein 3; PYRIN-containing APAF1-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Nlrp3em2Mcwi   Nlrp3em1Mcwi  
Genetic Models: SS-Nlrp3em1Mcwi SS-Nlrp3em2Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,826,299 - 44,853,373 (+)NCBIGRCr8
mRatBN7.21044,326,770 - 44,353,814 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1044,328,566 - 44,352,811 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1049,023,259 - 49,047,629 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,513,616 - 48,537,987 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01044,017,231 - 44,041,597 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,884,324 - 45,918,290 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,893,018 - 45,918,254 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,648,191 - 45,674,617 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,850,224 - 45,874,533 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,864,282 - 45,887,837 (+)NCBI
Celera1043,590,413 - 43,614,602 (+)NCBICelera
Cytogenetic Map10q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-taxifolin  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(20S)-ginsenoside Rg3  (ISO)
(R)-carnitine  (EXP)
(S)-nicotine  (ISO)
(S)-ropivacaine  (ISO)
1,2-dichloroethane  (ISO)
1,4-phenylenediamine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4-D  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,5-hexanedione  (EXP)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (EXP)
2-amino-2-deoxy-D-galactopyranose  (ISO)
3,5-diethoxycarbonyl-1,4-dihydrocollidine  (ISO)
3-chloropropane-1,2-diol  (EXP,ISO)
3-mercaptopropanoic acid  (ISO)
3-methyladenine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-methyl-3-[[1-oxo-2-(propylamino)propyl]amino]-2-thiophenecarboxylic acid methyl ester  (ISO)
4-phenylbutyric acid  (EXP,ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxamide  (ISO)
6-propyl-2-thiouracil  (EXP)
7,9-dihydro-1H-purine-2,6,8(3H)-trione  (ISO)
7-ketocholesterol  (ISO)
acetamide  (EXP)
acetic acid  (EXP)
acetylsalicylic acid  (ISO)
aconitine  (EXP,ISO)
acrolein  (EXP,ISO)
acrylamide  (EXP,ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (ISO)
allethrin  (ISO)
allicin  (ISO)
allopurinol  (EXP,ISO)
allyl methyl disulfide  (ISO)
aluminium hydroxide  (ISO)
aluminium sulfate (anhydrous)  (ISO)
amitriptyline  (ISO)
amphetamine  (EXP)
amphibole asbestos  (EXP)
anthocyanin  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP,ISO)
antirheumatic drug  (ISO)
apigenin  (ISO)
apocynin  (ISO)
aripiprazole  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP,ISO)
artesunate  (EXP)
asbestos  (ISO)
astragaloside IV  (EXP)
atorvastatin calcium  (EXP,ISO)
ATP  (EXP,ISO)
atrazine  (EXP,ISO)
atropine  (ISO)
aucubin  (ISO)
aurantio-obtusin  (ISO)
azathioprine  (ISO)
bafilomycin A1  (ISO)
baicalin  (ISO)
BAPTA  (ISO)
bellidifolin  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
berberine  (EXP,ISO)
Bergenin  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bortezomib  (EXP,ISO)
buspirone  (EXP)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
CARBENOXOLONE  (ISO)
CCCP  (ISO)
celastrol  (EXP)
CGP 52608  (ISO)
chitosan  (EXP)
chloroquine  (EXP)
chlorpyrifos  (ISO)
chlorquinaldol  (ISO)
cholesterol  (EXP,ISO)
choline  (ISO)
chromium(6+)  (ISO)
chrysin  (EXP)
cisplatin  (EXP,ISO)
cobalt atom  (ISO)
copper(II) sulfate  (ISO)
cordycepin  (ISO)
corilagin  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
curcumin  (EXP,ISO)
Curcumol  (ISO)
cycloheximide  (ISO)
cyclophosphamide  (EXP,ISO)
cyclosporin A  (EXP,ISO)
D-glucose  (EXP,ISO)
dapagliflozin  (EXP)
deoxynivalenol  (ISO)
desipramine  (ISO)
dexamethasone  (EXP,ISO)
dexmedetomidine  (ISO)
dextran sulfate  (EXP,ISO)
diallyl disulfide  (ISO)
Diallyl sulfide  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (EXP,ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
diclofenac  (EXP,ISO)
dicloxacillin  (ISO)
diethyldithiocarbamic acid  (ISO)
dihydroartemisinin  (EXP)
dimethyl fumarate  (EXP,ISO)
dimethyldithiocarbamate  (ISO)
diosmetin  (EXP)
dioxygen  (EXP,ISO)
diprotium oxide  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
emodin  (ISO)
endosulfan  (ISO)
ergosterol  (EXP)
eriodictyol  (ISO)
Erionite  (ISO)
ethanol  (EXP,ISO)
fenofibrate  (ISO)
fenpropathrin  (EXP)
flutamide  (ISO)
fluvastatin  (EXP)
formaldehyde  (ISO)
formononetin  (ISO)
fructose  (EXP)
fulvestrant  (ISO)
fumonisin B1  (ISO)
furan  (EXP,ISO)
furosemide  (EXP)
Fusaric acid  (ISO)
galangin  (EXP)
genkwanin  (ISO)
gentamycin  (EXP)
ginsenoside Rb1  (EXP,ISO)
glucose  (EXP,ISO)
glyburide  (EXP,ISO)
glycerol  (EXP)
glycidol  (EXP)
glycine betaine  (EXP)
glyphosate  (EXP)
graphene oxide  (ISO)
guggulsterone  (EXP)
GW 4064  (ISO)
hexadecanoic acid  (EXP,ISO)
HU-308  (ISO)
hyaluronic acid  (EXP)
hydrogen chloride  (ISO)
hydrogen peroxide  (ISO)
hydrogen sulfide  (EXP)
hydroquinone  (ISO)
hydroxysafflor yellow A  (ISO)
ibuprofen  (ISO)
icariin  (ISO)
indometacin  (EXP,ISO)
iohexol  (EXP,ISO)
iron dextran  (EXP)
isoflurane  (ISO)
JTE-013  (EXP)
ketoconazole  (ISO)
L-methionine  (ISO)
lead diacetate  (EXP,ISO)
lead(0)  (EXP,ISO)
letrozole  (EXP)
levocabastine  (ISO)
Liensinine  (ISO)
lipopolysaccharide  (EXP,ISO)
lithium carbonate  (ISO)
lithocholic acid  (ISO)
loganin  (ISO)
luteolin  (ISO)
LY294002  (EXP)
lycopene  (ISO)
lysophosphatidylcholine  (ISO)
magnesium dihydroxide  (ISO)
malvidin  (ISO)
maneb  (ISO)
mangiferin  (ISO)
mebendazole  (ISO)
melatonin  (ISO)
memantine  (ISO)
mercury atom  (ISO)
mercury dichloride  (ISO)
mercury(0)  (ISO)
mesalamine  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methotrexate  (EXP)
microcystin-LR  (ISO)
minocycline  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
morphine  (ISO)
Morroniside  (ISO)
myrtenol  (EXP)
N(gamma)-nitro-L-arginine methyl ester  (ISO)
N,N-dimethylformamide  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
Neoisoliquiritin  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
niclosamide  (ISO)
nicotine  (ISO)
nigericin  (EXP,ISO)
NMN zwitterion  (EXP,ISO)
Nonylphenol  (EXP,ISO)
obeticholic acid  (EXP)
ochratoxin A  (ISO)
omeprazole  (EXP)
Ondansetron  (EXP)
ozone  (EXP,ISO)
paeoniflorin  (ISO)
Palbinone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
parthenolide  (EXP)
patulin  (ISO)
pentanal  (ISO)
Pentoxifylline  (EXP)
perfluorodecanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (ISO)
phenytoin  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phosgene  (EXP)
PRIM-O-GLUCOSYLCIMIFUGIN  (ISO)
procyanidin B2  (EXP)
propanal  (ISO)
pterostilbene  (ISO)
puerarin  (ISO)
Pyridostigmine bromide  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (EXP,ISO)
raloxifene  (ISO)
resveratrol  (EXP,ISO)
Rhein  (ISO)
rifampicin  (ISO)
rimonabant  (ISO)
rosmarinic acid  (ISO)
rotenone  (EXP,ISO)
Ruscogenin  (ISO)
rutin  (EXP)
S-allylcysteine  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP,ISO)
Salidroside  (EXP,ISO)
salvianolic acid B  (ISO)
SB 203580  (EXP,ISO)
scutellarin  (EXP)
selenium atom  (ISO)
serpentine asbestos  (ISO)
sevoflurane  (EXP)
silicon dioxide  (EXP,ISO)
simvastatin  (EXP)
sinapic acid  (EXP)
sirolimus  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sphingosine 1-phosphate  (EXP)
spironolactone  (EXP)
streptozocin  (EXP,ISO)
succimer  (ISO)
sulfasalazine  (EXP)
sulforaphane  (ISO)
tamoxifen  (ISO)
taurine  (EXP,ISO)
tauroursodeoxycholic acid  (ISO)
testosterone  (EXP,ISO)
Tetrachlorobisphenol A  (ISO)
tetrachloromethane  (ISO)
tetramethylpyrazine  (ISO)
thapsigargin  (ISO)
thiamine(1+) chloride  (EXP)
thioacetamide  (EXP,ISO)
thiram  (ISO)
titanium dioxide  (EXP)
toluene 2,4-diisocyanate  (ISO)
toyocamycin  (ISO)
trichloroethene  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
triptonide  (ISO)
tropan-3alpha-yl 3-hydroxy-2-phenylpropanoate  (ISO)
Tungsten carbide  (ISO)
tunicamycin  (EXP,ISO)
ubiquinone-0  (ISO)
verapamil  (EXP)
vinclozolin  (EXP)
water  (ISO)
XL147  (ISO)
zearalenone  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
ziram  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
acute inflammatory response  (ISO)
cellular response to lipopolysaccharide  (ISO)
cellular response to peptidoglycan  (ISO)
cellular response to virus  (ISO)
defense response to Gram-positive bacterium  (ISO)
defense response to virus  (ISO)
detection of biotic stimulus  (ISO,ISS)
inflammatory response  (IEA,ISO,ISS)
innate immune response  (IEA)
negative regulation of acute inflammatory response  (ISO)
negative regulation of inflammatory response  (ISO)
negative regulation of interleukin-1 beta production  (ISO)
negative regulation of non-canonical NF-kappaB signal transduction  (IBA,ISO)
NLRP3 inflammasome complex assembly  (ISO,ISS)
positive regulation of cysteine-type endopeptidase activity  (ISO)
positive regulation of cytokine production involved in immune response  (ISO)
positive regulation of inflammatory response  (ISO,ISS)
positive regulation of interleukin-1 beta production  (ISO,ISS)
positive regulation of interleukin-13 production  (ISO)
positive regulation of interleukin-4 production  (ISO)
positive regulation of interleukin-5 production  (ISO)
positive regulation of NF-kappaB transcription factor activity  (ISO)
positive regulation of non-canonical NF-kappaB signal transduction  (ISO)
positive regulation of T-helper 17 cell differentiation  (ISO)
positive regulation of T-helper 2 cell cytokine production  (ISO)
positive regulation of T-helper 2 cell differentiation  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of type 2 immune response  (ISO)
protein homooligomerization  (ISO,ISS)
protein maturation  (ISO)
regulation of inflammatory response  (IBA,ISO)
response to ethanol  (IEP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. SARS Unique Domain (SUD) of Severe Acute Respiratory Syndrome Coronavirus Induces NLRP3 Inflammasome-Dependent CXCL10-Mediated Pulmonary Inflammation. Chang YS, etal., Int J Mol Sci. 2020 Apr 30;21(9). pii: ijms21093179. doi: 10.3390/ijms21093179.
2. Immunological and inflammatory functions of the interleukin-1 family. Dinarello CA Annu Rev Immunol. 2009;27:519-50.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. LncRNA H19 suppresses pyroptosis of cardiomyocytes to attenuate myocardial infarction in a PBX3/CYP1B1-dependent manner. Han Y, etal., Mol Cell Biochem. 2021 Mar;476(3):1387-1400. doi: 10.1007/s11010-020-03998-y. Epub 2021 Jan 3.
6. Mutation of a new gene encoding a putative pyrin-like protein causes familial cold autoinflammatory syndrome and Muckle-Wells syndrome. Hoffman HM, etal., Nat Genet. 2001 Nov;29(3):301-5.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. The inflammasomes. Schroder K and Tschopp J, Cell. 2010 Mar 19;140(6):821-32. doi: 10.1016/j.cell.2010.01.040.
13. Inflammasome Activation Aggravates Cutaneous Xanthomatosis and Atherosclerosis in ACAT1 (Acyl-CoA Cholesterol Acyltransferase 1) Deficiency in Bone Marrow. Wakabayashi T, etal., Arterioscler Thromb Vasc Biol. 2018 Nov;38(11):2576-2589. doi: 10.1161/ATVBAHA.118.311648.
14. Up-regulation of microRNA-223 inhibits brain injury and hippocampal neuron apoptosis of rats after febrile seizure through the NLRP3-Caspase-1 signaling pathway. Wang B, etal., Biomed Pharmacother. 2019 Jun;114:108683. doi: 10.1016/j.biopha.2019.108683. Epub 2019 Apr 1.
15. Dihydroartemisinin protects against alcoholic liver injury through alleviating hepatocyte steatosis in a farnesoid X receptor-dependent manner. Xu W, etal., Toxicol Appl Pharmacol. 2017 Jan 15;315:23-34. doi: 10.1016/j.taap.2016.12.001. Epub 2016 Dec 6.
Additional References at PubMed
PMID:12093792   PMID:12483741   PMID:14662828   PMID:15030775   PMID:15817483   PMID:16531551   PMID:17008311   PMID:17164409   PMID:17178985   PMID:19158675   PMID:22002608   PMID:22297845  
PMID:22753929   PMID:23089744   PMID:23229815   PMID:23580606   PMID:23582325   PMID:23892989   PMID:23986436   PMID:23997220   PMID:24630722   PMID:24859041   PMID:25024200   PMID:25136835  
PMID:25152022   PMID:25281528   PMID:25338942   PMID:25388914   PMID:25516224   PMID:25568124   PMID:25602171   PMID:25651569   PMID:25967877   PMID:26025362   PMID:26098997   PMID:26133299  
PMID:26438340   PMID:26514727   PMID:26576075   PMID:26728324   PMID:26754474   PMID:26770647   PMID:26866373   PMID:26881256   PMID:26996110   PMID:27247388   PMID:27345365   PMID:27367537  
PMID:27374331   PMID:27509875   PMID:27543123   PMID:27843532   PMID:27872860   PMID:27973457   PMID:28000751   PMID:28038382   PMID:28189055   PMID:28189971   PMID:28215032   PMID:28247334  
PMID:28374152   PMID:28420787   PMID:28428961   PMID:28525945   PMID:28592436   PMID:28655515   PMID:28714351   PMID:28782714   PMID:28798291   PMID:28847925   PMID:28851669   PMID:28936769  
PMID:28961497   PMID:28981106   PMID:29069583   PMID:29096724   PMID:29129820   PMID:29258866   PMID:29303910   PMID:29304864   PMID:29305119   PMID:29522854   PMID:29802529   PMID:29842860  
PMID:29884910   PMID:29890246   PMID:29901140   PMID:30144105   PMID:30153825   PMID:30161099   PMID:30232232   PMID:30259999   PMID:30626731   PMID:30628668   PMID:30700851   PMID:30942391  
PMID:31017263   PMID:31037898   PMID:31056470   PMID:31058793   PMID:31059678   PMID:31118021   PMID:31173172   PMID:31199706   PMID:31266422   PMID:31541678   PMID:31573048   PMID:31652453  
PMID:31657084   PMID:31747940   PMID:31763668   PMID:31869244   PMID:31975410   PMID:32126269   PMID:32323758   PMID:32439949   PMID:32461137   PMID:32485293   PMID:32596762   PMID:32607760  
PMID:32626997   PMID:32686873   PMID:32721950   PMID:32729005   PMID:32860822   PMID:32870491   PMID:32950473   PMID:32952148   PMID:32980492   PMID:32991876   PMID:33012731   PMID:33022900  
PMID:33040786   PMID:33135192   PMID:33155218   PMID:33187650   PMID:33236152   PMID:33385377   PMID:33398367   PMID:33415876   PMID:33470533   PMID:33608866   PMID:33626373   PMID:33641439  
PMID:33648977   PMID:33655332   PMID:33677218   PMID:33713981   PMID:33777317   PMID:33814530   PMID:33862118   PMID:33928044   PMID:33930202   PMID:33933884   PMID:33975327   PMID:33977303  
PMID:34396759   PMID:34398134   PMID:34414459   PMID:34414461   PMID:34422094   PMID:34423720   PMID:34432650   PMID:34472725   PMID:34481142   PMID:34492249   PMID:34517258   PMID:34599154  
PMID:34638670   PMID:34676022   PMID:34687223   PMID:34743016   PMID:34830465   PMID:34890588   PMID:34899720   PMID:34933200   PMID:35033112   PMID:35042119   PMID:35046893   PMID:35089581  
PMID:35104732   PMID:35263214   PMID:35301664   PMID:35401582   PMID:35488974   PMID:35585627   PMID:35605331   PMID:35678979   PMID:35729645   PMID:35775127   PMID:35932799   PMID:35953459  
PMID:35962723   PMID:36085346   PMID:36087911   PMID:36114434   PMID:36437451   PMID:36509326   PMID:36623753   PMID:36709248   PMID:36869068   PMID:37087770   PMID:37121693   PMID:37162629  
PMID:37169561   PMID:37199660   PMID:37219532   PMID:37389784   PMID:37424158   PMID:37458218   PMID:37497691   PMID:37549514   PMID:37590975   PMID:37603152   PMID:37740811   PMID:37749991  
PMID:37814350   PMID:37904706   PMID:37991531   PMID:38029612   PMID:38158667   PMID:38264929   PMID:38349604   PMID:38413031   PMID:38438086   PMID:38526919   PMID:38653383   PMID:38676809  
PMID:38716981   PMID:38720901   PMID:38788361   PMID:38936540  


Genomics

Comparative Map Data
Nlrp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,826,299 - 44,853,373 (+)NCBIGRCr8
mRatBN7.21044,326,770 - 44,353,814 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1044,328,566 - 44,352,811 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1049,023,259 - 49,047,629 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,513,616 - 48,537,987 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01044,017,231 - 44,041,597 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,884,324 - 45,918,290 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,893,018 - 45,918,254 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,648,191 - 45,674,617 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,850,224 - 45,874,533 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,864,282 - 45,887,837 (+)NCBI
Celera1043,590,413 - 43,614,602 (+)NCBICelera
Cytogenetic Map10q22NCBI
NLRP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381247,416,077 - 247,448,817 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1247,332,331 - 247,449,108 (+)EnsemblGRCh38hg38GRCh38
GRCh371247,579,475 - 247,612,119 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361245,646,098 - 245,679,033 (+)NCBINCBI36Build 36hg18NCBI36
Build 341243,907,391 - 243,938,445NCBI
Celera1220,878,780 - 220,911,159 (+)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1217,973,841 - 218,006,798 (+)NCBIHuRef
CHM1_11248,851,104 - 248,884,745 (+)NCBICHM1_1
T2T-CHM13v2.01246,852,567 - 246,885,459 (+)NCBIT2T-CHM13v2.0
Nlrp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,432,395 - 59,457,781 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,432,394 - 59,457,782 (+)EnsemblGRCm39 Ensembl
GRCm381159,541,569 - 59,566,955 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,541,568 - 59,566,956 (+)EnsemblGRCm38mm10GRCm38
MGSCv371159,356,188 - 59,380,458 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,078,786 - 60,103,056 (+)NCBIMGSCv36mm8
MGSCv361159,358,881 - 59,383,151 (+)NCBIMGSCv36mm8
Cytogenetic Map11B1.3NCBI
cM Map1137.73NCBI
Nlrp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581597,667 - 617,410 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955581597,952 - 616,903 (+)NCBIChiLan1.0ChiLan1.0
NLRP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211,607,444 - 1,639,994 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111,880,494 - 1,912,984 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01223,052,307 - 223,084,736 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11228,505,147 - 228,537,216 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1228,505,147 - 228,537,216 (+)Ensemblpanpan1.1panPan2
NLRP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.18251,776 - 313,290 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl8253,407 - 313,059 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha8277,639 - 339,097 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.08299,639 - 361,123 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl8301,633 - 360,913 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.18242,540 - 300,444 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.08204,531 - 262,443 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.08337,026 - 389,302 (+)NCBIUU_Cfam_GSD_1.0
Nlrp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721388,366,531 - 88,390,960 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936864709,709 - 731,718 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936864709,693 - 732,119 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NLRP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl256,892,243 - 56,977,228 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1256,892,241 - 56,977,412 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2257,789,084 - 57,873,272 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NLRP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12584,431,436 - 84,463,387 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2584,434,527 - 84,463,249 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605586,817,681 - 86,848,042 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nlrp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624937564,191 - 584,470 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nlrp3
186 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:89
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000004280
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103571058068663659Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103449055945579777Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
11528628Bss116Bone structure and strength QTL 1166.464e-07femur morphology trait (VT:0000559)femur length (CMO:0000442)104417977045632973Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103539226751793994Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat


Genetic Models
This gene Nlrp3 is modified in the following models/strains:
SS-Nlrp3em1Mcwi     SS-Nlrp3em2Mcwi    


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006246453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006246455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006246457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006246458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000004280   ⟹   ENSRNOP00000004280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1044,328,566 - 44,352,811 (+)Ensembl
Rnor_6.0 Ensembl1045,893,018 - 45,917,287 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086710   ⟹   ENSRNOP00000072545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1044,328,805 - 44,352,811 (+)Ensembl
Rnor_6.0 Ensembl1045,893,106 - 45,918,254 (+)Ensembl
RefSeq Acc Id: NM_001191642   ⟹   NP_001178571