Upp2 (uridine phosphorylase 2) - Rat Genome Database

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Gene: Upp2 (uridine phosphorylase 2) Rattus norvegicus
Analyze
Symbol: Upp2
Name: uridine phosphorylase 2
RGD ID: 1308188
Description: Predicted to enable deoxyuridine phosphorylase activity; identical protein binding activity; and uridine phosphorylase activity. Predicted to be involved in pyrimidine nucleoside monophosphate catabolic process and uridine catabolic process. Predicted to be located in type III intermediate filament. Predicted to be active in cytosol. Orthologous to human UPP2 (uridine phosphorylase 2); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; mitochondrial neurogastrointestinal encephalopathy syndrome pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC295620
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8363,681,671 - 63,726,194 (+)NCBIGRCr8
mRatBN7.2343,273,048 - 43,317,417 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl343,273,048 - 43,317,417 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx346,619,808 - 46,664,017 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0355,200,614 - 55,244,977 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0352,986,266 - 53,030,541 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0344,806,106 - 44,846,464 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl344,806,106 - 44,846,464 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0349,922,719 - 49,961,766 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4340,492,002 - 40,536,956 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1340,380,721 - 40,432,184 (+)NCBI
Celera341,338,432 - 41,381,638 (+)NCBICelera
Cytogenetic Map3q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7488099   PMID:11278417   PMID:12849978   PMID:14715930   PMID:21855639   PMID:25416956   PMID:26871637   PMID:29892012   PMID:31515488  


Genomics

Comparative Map Data
Upp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8363,681,671 - 63,726,194 (+)NCBIGRCr8
mRatBN7.2343,273,048 - 43,317,417 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl343,273,048 - 43,317,417 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx346,619,808 - 46,664,017 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0355,200,614 - 55,244,977 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0352,986,266 - 53,030,541 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0344,806,106 - 44,846,464 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl344,806,106 - 44,846,464 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0349,922,719 - 49,961,766 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4340,492,002 - 40,536,956 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1340,380,721 - 40,432,184 (+)NCBI
Celera341,338,432 - 41,381,638 (+)NCBICelera
Cytogenetic Map3q21NCBI
UPP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382157,995,179 - 158,136,154 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2157,876,679 - 158,136,154 (+)EnsemblGRCh38hg38GRCh38
GRCh372158,851,691 - 158,992,666 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362158,559,937 - 158,700,724 (+)NCBINCBI36Build 36hg18NCBI36
Build 342158,677,198 - 158,817,985NCBI
Celera2152,468,457 - 152,609,424 (+)NCBICelera
Cytogenetic Map2q24.1NCBI
HuRef2150,739,887 - 150,880,962 (+)NCBIHuRef
CHM1_12158,857,583 - 158,998,565 (+)NCBICHM1_1
T2T-CHM13v2.02158,452,010 - 158,592,948 (+)NCBIT2T-CHM13v2.0
Upp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39258,456,329 - 58,685,858 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl258,457,310 - 58,682,983 (+)EnsemblGRCm39 Ensembl
GRCm38258,566,317 - 58,795,846 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl258,567,298 - 58,792,971 (+)EnsemblGRCm38mm10GRCm38
MGSCv37258,607,596 - 58,643,079 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36258,570,571 - 58,606,054 (+)NCBIMGSCv36mm8
Celera260,510,835 - 60,545,982 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map233.16NCBI
Upp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544915,365,106 - 15,405,235 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544915,355,592 - 15,405,997 (-)NCBIChiLan1.0ChiLan1.0
LOC100995749
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21360,768,775 - 60,805,910 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B60,783,749 - 60,820,884 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B45,363,103 - 45,400,281 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B162,603,164 - 162,636,231 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B162,496,507 - 162,636,231 (+)Ensemblpanpan1.1panPan2
Upp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303121,104,636 - 121,152,019 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646920,465,767 - 20,513,075 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646920,465,767 - 20,513,084 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UPP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1565,088,795 - 65,131,788 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11565,088,652 - 65,131,739 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21572,235,731 - 72,280,652 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UPP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11043,510,752 - 43,545,133 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040156,036,611 - 156,069,106 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Upp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247327,597,782 - 7,644,423 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247327,574,609 - 7,641,345 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Upp2
226 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:512
Count of miRNA genes:271
Interacting mature miRNAs:329
Transcripts:ENSRNOT00000035158
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)32749462144188411Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)32749462150302886Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)33871036550302886Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat

Markers in Region
D3Got245  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2343,280,796 - 43,280,989 (+)MAPPERmRatBN7.2
Rnor_6.0344,813,854 - 44,814,046NCBIRnor6.0
Rnor_5.0349,930,467 - 49,930,659UniSTSRnor5.0
RGSC_v3.4340,499,755 - 40,499,947UniSTSRGSC3.4
Celera341,346,180 - 41,346,372UniSTS
Cytogenetic Map3q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 8 8 1
Low 15 15 1 15 20 2 1
Below cutoff 2 7 16 17 8 9 14 10 12 9 8

Sequence


RefSeq Acc Id: ENSRNOT00000035158   ⟹   ENSRNOP00000038248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl343,273,048 - 43,317,417 (+)Ensembl
Rnor_6.0 Ensembl344,806,106 - 44,846,464 (+)Ensembl
RefSeq Acc Id: NM_001106481   ⟹   NP_001099951
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,681,826 - 63,726,191 (+)NCBI
mRatBN7.2343,273,048 - 43,317,417 (+)NCBI
Rnor_6.0344,806,106 - 44,846,464 (+)NCBI
Rnor_5.0349,922,719 - 49,961,766 (+)NCBI
RGSC_v3.4340,492,002 - 40,536,956 (+)RGD
Celera341,338,432 - 41,381,638 (+)RGD
Sequence:
RefSeq Acc Id: XM_039104478   ⟹   XP_038960406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8363,681,671 - 63,726,194 (+)NCBI
mRatBN7.2343,273,395 - 43,317,417 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001099951 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960406 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM00400 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038248.3
RefSeq Acc Id: NP_001099951   ⟸   NM_001106481
- UniProtKB: D4A9N9 (UniProtKB/TrEMBL),   A6JF60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000038248   ⟸   ENSRNOT00000035158
RefSeq Acc Id: XP_038960406   ⟸   XM_039104478
- Peptide Label: isoform X1
Protein Domains
Nucleoside phosphorylase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9N9-F1-model_v2 AlphaFold D4A9N9 1-316 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692085
Promoter ID:EPDNEW_R2610
Type:initiation region
Name:Upp2_1
Description:uridine phosphorylase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0344,806,262 - 44,806,322EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308188 AgrOrtholog
BioCyc Gene G2FUF-49648 BioCyc
BioCyc Pathway PWY-7181 [pyrimidine deoxyribonucleosides degradation] BioCyc
  PWY0-1295 [pyrimidine ribonucleosides degradation] BioCyc
BioCyc Pathway Image PWY-7181 BioCyc
  PWY0-1295 BioCyc
Ensembl Genes ENSRNOG00000005341 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035158.4 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1580 UniProtKB/TrEMBL
InterPro Nucleoside_phosphorylase_CS UniProtKB/TrEMBL
  Nucleoside_phosphorylase_d UniProtKB/TrEMBL
  Nucleoside_phosphorylase_sf UniProtKB/TrEMBL
  Uridine_phosphorylase_euk UniProtKB/TrEMBL
KEGG Report rno:295620 UniProtKB/TrEMBL
NCBI Gene 295620 ENTREZGENE
PANTHER URIDINE PHOSPHORYLASE UniProtKB/TrEMBL
  URIDINE PHOSPHORYLASE 2 UniProtKB/TrEMBL
Pfam PNP_UDP_1 UniProtKB/TrEMBL
PharmGKB UPP2 RGD
PhenoGen Upp2 PhenoGen
PROSITE PNP_UDP_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005341 RatGTEx
Superfamily-SCOP SSF53167 UniProtKB/TrEMBL
UniProt A6JF60 ENTREZGENE, UniProtKB/TrEMBL
  D4A9N9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Upp2  uridine phosphorylase 2   Upp2_predicted  uridine phosphorylase 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Upp2_predicted  uridine phosphorylase 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED