Ccdc178 (coiled-coil domain containing 178)

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Imported Disease Annotations - ClinVar

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Gene: Ccdc178 (coiled-coil domain containing 178) Rattus norvegicus

Analyze

Symbol:

Ccdc178

Name:

coiled-coil domain containing 178

RGD ID:

1308160

Description:

Predicted to be located in ciliary basal body. Orthologous to human CCDC178 (coiled-coil domain containing 178); INTERACTS WITH bisphenol A; indole-3-methanol; vinclozolin.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 178; LOC102555652; LOC307556; RGD1308160; similar to Myosin heavy chain A (MHC A); uncharacterized LOC102555652

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	13,074,834 - 13,472,732 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	13,075,468 - 13,472,160 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	18	12,796,155 - 13,199,923 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	12,796,195 - 13,194,952 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	12,788,146 - 12,958,891 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	13,440,195 - 13,817,915 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	13,466,840 - 14,028,711 (-)	NCBI
Celera	18	13,053,917 - 13,450,440 (-)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3',4,4',5-Pentachlorobiphenyl (ISO)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

diallyl disulfide (ISO)

indole-3-methanol (EXP)

methapyrilene (ISO)

perfluorononanoic acid (ISO)

sodium arsenite (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

ciliary basal body (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Ccdc178
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	13,074,834 - 13,472,732 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	13,075,468 - 13,472,160 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	18	12,796,155 - 13,199,923 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	12,796,195 - 13,194,952 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	12,788,146 - 12,958,891 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	13,440,195 - 13,817,915 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	13,466,840 - 14,028,711 (-)	NCBI
Celera	18	13,053,917 - 13,450,440 (-)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

CCDC178
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	32,937,406 - 33,441,040 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	32,937,402 - 33,441,101 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	18	30,517,370 - 31,021,004 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	28,771,364 - 29,274,683 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	18	28,771,586 - 29,274,683	NCBI
Celera	18	27,325,560 - 27,828,679 (-)	NCBI		Celera
Cytogenetic Map	18	q12.1	NCBI
HuRef	18	27,375,985 - 27,880,080 (-)	NCBI		HuRef
CHM1_1	18	30,445,087 - 30,948,305 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	18	33,129,211 - 33,632,807 (-)	NCBI		T2T-CHM13v2.0

Ccdc178
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	21,943,954 - 22,304,453 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	21,943,950 - 22,304,499 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	21,810,897 - 22,171,396 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	21,810,893 - 22,171,442 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	21,969,398 - 22,329,897 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	21,953,907 - 22,314,406 (-)	NCBI		MGSCv36	mm8
Celera	18	22,312,161 - 22,671,219 (-)	NCBI		Celera
Cytogenetic Map	18	A2	NCBI
cM Map	18	11.96	NCBI

Ccdc178
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	20,076,826 - 20,429,151 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	20,076,834 - 20,429,089 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC178
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	18	36,002,194 - 36,505,653 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	26,140,067 - 26,643,526 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	29,732,628 - 30,235,968 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	29,733,237 - 30,206,721 (-)	Ensembl	panpan1.1		panPan2

CCDC178
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	56,405,081 - 56,831,787 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	56,404,878 - 56,831,558 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	55,838,729 - 56,264,751 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	56,375,558 - 56,806,303 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	56,375,480 - 56,806,074 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	56,061,670 - 56,491,602 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	56,083,209 - 56,509,498 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	56,379,182 - 56,805,441 (+)	NCBI		UU_Cfam_GSD_1.0

Ccdc178
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	52,116,768 - 52,457,791 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936682	117,455 - 459,368 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC178
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	116,764,203 - 117,202,212 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	116,765,040 - 117,187,000 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CCDC178
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	47,296,216 - 47,805,502 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	47,339,825 - 47,637,251 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	21,819,082 - 22,042,170 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc178
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624779	7,726,526 - 7,998,593 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ccdc178
2992 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	108
Count of miRNA genes:	97
Interacting mature miRNAs:	102
Transcripts:	ENSRNOT00000050933
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	25758124	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	25758124	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)	18	2249477	22066430	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	2249477	22066430	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	11944273	26548295	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	11944273	26548295	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	11944273	26548295	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	11944273	26548295	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	11944273	26548295	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	11944273	26548295	Rat
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944273	26548295	Rat
1331781	Scl28	Serum cholesterol level QTL 28	3.995		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	11944299	24797117	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat

Markers in Region

AU047997

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	13,125,630 - 13,125,810 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	12,846,520 - 12,846,699	NCBI	Rnor6.0
Rnor_5.0	18	12,634,253 - 12,634,432	UniSTS	Rnor5.0
RGSC_v3.4	18	13,491,148 - 13,491,327	UniSTS	RGSC3.4
Celera	18	13,104,436 - 13,104,615	UniSTS
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008774121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000050933 ⟹ ENSRNOP00000042594

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	13,075,468 - 13,472,160 (-)	Ensembl
Rnor_6.0 Ensembl	18	13,018,620 - 13,183,263 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092925 ⟹ ENSRNOP00000075939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	12,796,195 - 13,194,952 (-)	Ensembl

RefSeq Acc Id:

XM_017601075 ⟹ XP_017456564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	13,074,834 - 13,472,732 (-)	NCBI
Rnor_6.0	18	12,796,156 - 13,199,923 (-)	NCBI

Sequence:

show sequence

GGGAGGCTCGAGCCAGTAACGGACGGACGCCACAGCAGAGAAGCGAAAGCTGGCGTAGAGGCTC
TCAGTATGGTGTGAAAATACAGAGAAAAGAGAAGTTCTACCAAGAACTGTGAAGGATGAAAGAT
TTCCAACTTTCTGGCAGGCCAACAAGCTGTCTGATTTGAATGAAGAAAGCCTGAGGATTCCAGG
CAGGAGACTTTTGAAAAATTGTCAGGTTTTAGAATACTGTCAAAAATCATGCCAGAAAACGAGA
AAAATGCAGCTCAACCTAGCACCAATGAGGATACATCAAAGACAGGTAGAACATGTCTTCAAAT
AAAGGAGCTCAAAGACAAAGCAAGGGCATTAATGATTGCAGAACATGCCAGAATGCAAGGCTTG
TCAGAATTCTTCTTCTCCAAGCATGACGATAAAACACTTTACGAAACTAAATCAACAAATACAG
AAGAGGTGAATAAAGGCATCTACTTCAGCTACCCAAGTCGACGACATAGCTGTTCTTTGGTAAA
TTTCCCTAAACCATGTGTCAGCAAAATGATTGCCCACATTGAAGATGTGGAATGTAAAATACAG
GAGCACTTGAAACAATTTGAAGCTTCCTTTGAAGAATGGACTTCAGCCACAAAAGATAAAAAGG
AAGACTTGGATATCTCTGCTTCAGCGCAAAAAATCCCCCCAGGAAAAGCGAAAGATGTGAAGTG
TCCTGAATTGAAGAAGAGGATGGAGACATTACTATCAGAGGCCATCCACCTCGTTAAAAGTCTG
GAAACTGACAGAGCAGAAGCAGAACAAGCTTTAAGACAACAAAAGTCAAGAAAGAATAGGATTA
GCATGAAAATTGACTCTTGGTCCATCTGGAAGCTCCAAGAACTCCCAGTAGCTGTTCAGAAAGA
ACATGAAGCCTTCTCCAAAGAAATTGCAGAGCTGCGCAACCATCTTAAAGATTTGAGGAACACG
GCGGATCAACTGCAGGAGCAGACGGACATGTTGGAACAAGCCAATTCAAAGGTCCAGGCGGACA
TAGACTACATGATTTCTCATAGCGTTCTGCTGGAGAAGAAGCGCAAGCAGGAGCTAGAACTTCT
GAGAAAGCGGTACCAAAAAAAGTTTGAGGTGATGGAACAATTTAGAGCACTTCATGAAGAGCTT
AAAGATTCTGTGGACCAGATTGAAAATGCGAAGATAAGGCTGAAGCGCATGAAAGAAGAGGATG
AGAGAGAGCTCCTCAAGGATCTAACAACTGCAGCATCCTATGATAAAGAACTAGATAAGCTTAG
CAATCTGGATGATCACTACACAACCTCAATCGAGTCTGTGAACCAGGACATTGAAGAGGACGAA
GAAGTAGTGAGTGAGGTCCTGAGAGAAACACAGAGCACATCAAATGAACTAGCGAATTTAATGA
GAATGATAGAGGATTTGAAAAGACAGTTTGATCAATATTGCTGGATCCAAAGGAAATATGAACA
GGAGTACACAGAGGCACTTAATAATTATTACTCCGCAAAAAACACGTGGGACATTGAGCTTTCT
AATATTACAAAAGACTTCAACAATATCTCAACAGTGTATGTAGAGACGTTAGAAGAAAACAAGA
GGCTTAAATATGAAATTGACAATATAACAGAAGAAATTGGAGAAAGTATAAGGAAAAGAGCAGA
GCTCGAGGATGAAATCCACTCATTTAGGGAAATGAAGACGAGGAATAACAATTATCTCAAACAT
CTCTACAAGCAGTCTTATCATGTTGGGGCCGTCTACCACATAGCTAGGCACAAAACAGATGAAC
TGGAGGATAAACTAGCAGAAGTGAGAAGAAAATTCAAGGTTAGAGAAGATTTTCTGAAGAGGCT
TATAAGAAGTCACATAGCTACAGGGATTGAGGTTCAGAAAAGGCTGTATTCCGTTGAAGAATCC
CAGTTTGCTGAAATGCAGGAGTATATAAGAAGAAAGGTACTCTATAATGCGGCTTTGTTAGAGG
TACAGGAGCCACTGAAAGAGTTTGAAAGAGAGGCTGAGCGAATCAGGAACATTCACAGAGAGCA
CGCTAAAATGGTTCATGACATACGGAGGAGGAAAGAACGTGTTAAAAGAAAAGTAGAGGCAACA
AAGAAAAAATTACAGAAAAAAAGCAAGAAAAGCCTCAAGGAACTCACAAAAACTGAGGGAAAGG
GCACAATGATTCACCAAGAAATTGAGATAGCTAAAACCAAAACATTTGTTTTCCATGAGAAAAG
CAAGGAGCTGAGCAAGGAGATAATGATAATGGATCTGGAGAGGAAAAGCTTCGAAGAAAAACTT
GTAAAGTTGCAGGAAGAGTTCATGAAGTTGCGATTCGACAGGGAACACATACACGGCGTGTTCG
ACCACATCTTAAGAGAGAGACAGCGCTGTGAAGAGAGGATCTTCGATGAGGAGAGGAGGTTCAA
AAGGCTTACAGAAATGAGGAAGGACACCCTGGAGAACATCTTGGAACGTCAAAGCGATTTACTA
GACGAAAACCTACGTTTAGCCAAAGAGTATCAAAACACACAGATGCTTTTCTTAAAGGAGAAAG
AAGCTTACTTCAATGGATATGACAGATTGCTGTCACTCAATTCTTCAGTTTCTGATAAGAAAAA
GCTCTGTCAGCTGCAAAGAAAGCTGGGCCAGAAATGGCAAGAGTACTTCCGACTGTTGATCCTT
TTTAACCAGTCTAAGCTGGCCAAGTTCCAGGGAGACTCCCAGAACAGCATTCAGAAAATATTTG
TTGTGCAGGAGGAATCCTCAAGTCTAATTCAACACATCTTAGATTTCTTCCAGACTCTCCCAAC
TAGTCCATGTGAAGAAGATGACTAACCAAACAATCAATGTATCTTGGAAGCTGAAATAAAAGAC
AGGAAAAGTCGCACAGTTCAGATAACAGTGTAATTGGACATTCACCTGTTTGCCATTTCACACT
TCCATGGACGAAAAACTCACTCACCTCCCAGCATGCTTTGCCACTCTCTTACTTACAGCAAATC
CATAACAATGAAACAGGTGACTTTCATGCCGCTGTCAGGAACGATCTAATTTCATCTCTGGGTG
ACTGATTGCAATTGGCTTTGCCTCATCTGATAATTAATCTATGTCACCATTAATTGGAAGAGAG
AATAATTACTGGTGGTGTTGACAGTGACTGCTGGCTTCCCCAGATTTCCCCACTGTGTTGGCCC
AAATAAAGGCTTTGCAAGTCAGTACTTAAAGTTTGTGTAAACGTTAACAGTGCCTATACCCATG
TGACACCCTTAGATGCTCTGTCTAATACACTTTTGTTTTTCTGTTTACCAATCTTTTTTAGCTC
ACTGAGAGCTGTCTCTCTCAATCACTCCTCAATGTTCTATCTTAATTTTGTGGAAGTTTAAAGT
TTTCAATGAGCTGGAGATGAATGATTAATGAATAAATTTAAATGCTTCATTTTGTCCATGGATC
ATTAGTCAAGTCCTTTGTGGTAAGGACCT

hide sequence

Protein Sequences


Protein RefSeqs	XP_017456564	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76111	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_017456564 ⟸ XM_017601075

- UniProtKB:

A0A1B0GWL4 (UniProtKB/TrEMBL), F1M3U7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPENEKNAAQPSTNEDTSKTGRTCLQIKELKDKARALMIAEHARMQGLSEFFFSKHDDKTLYET
KSTNTEEVNKGIYFSYPSRRHSCSLVNFPKPCVSKMIAHIEDVECKIQEHLKQFEASFEEWTSA
TKDKKEDLDISASAQKIPPGKAKDVKCPELKKRMETLLSEAIHLVKSLETDRAEAEQALRQQKS
RKNRISMKIDSWSIWKLQELPVAVQKEHEAFSKEIAELRNHLKDLRNTADQLQEQTDMLEQANS
KVQADIDYMISHSVLLEKKRKQELELLRKRYQKKFEVMEQFRALHEELKDSVDQIENAKIRLKR
MKEEDERELLKDLTTAASYDKELDKLSNLDDHYTTSIESVNQDIEEDEEVVSEVLRETQSTSNE
LANLMRMIEDLKRQFDQYCWIQRKYEQEYTEALNNYYSAKNTWDIELSNITKDFNNISTVYVET
LEENKRLKYEIDNITEEIGESIRKRAELEDEIHSFREMKTRNNNYLKHLYKQSYHVGAVYHIAR
HKTDELEDKLAEVRRKFKVREDFLKRLIRSHIATGIEVQKRLYSVEESQFAEMQEYIRRKVLYN
AALLEVQEPLKEFEREAERIRNIHREHAKMVHDIRRRKERVKRKVEATKKKLQKKSKKSLKELT
KTEGKGTMIHQEIEIAKTKTFVFHEKSKELSKEIMIMDLERKSFEEKLVKLQEEFMKLRFDREH
IHGVFDHILRERQRCEERIFDEERRFKRLTEMRKDTLENILERQSDLLDENLRLAKEYQNTQML
FLKEKEAYFNGYDRLLSLNSSVSDKKKLCQLQRKLGQKWQEYFRLLILFNQSKLAKFQGDSQNS
IQKIFVVQEESSSLIQHILDFFQTLPTSPCEEDD

hide sequence

RefSeq Acc Id:

ENSRNOP00000075939 ⟸ ENSRNOT00000092925

RefSeq Acc Id:

ENSRNOP00000042594 ⟸ ENSRNOT00000050933

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A1B0GWL4-F1-model_v2	AlphaFold	A0A1B0GWL4	1-866	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308160	AgrOrtholog
BioCyc Gene	G2FUF-8195	BioCyc
Ensembl Genes	ENSRNOG00000022156	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000042594	ENTREZGENE
	ENSRNOP00000042594.6	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000050933	ENTREZGENE
	ENSRNOT00000050933.6	UniProtKB/TrEMBL
InterPro	CCDC178	UniProtKB/TrEMBL
KEGG Report	rno:307556	UniProtKB/TrEMBL
NCBI Gene	307556	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 178	UniProtKB/TrEMBL
	PTHR35088	UniProtKB/TrEMBL
PhenoGen	Ccdc178	PhenoGen
UniProt	A0A1B0GWL4	ENTREZGENE
	F1M3U7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-29	Ccdc178	coiled-coil domain containing 178	LOC102555652	uncharacterized LOC102555652	Data Merged	737654	PROVISIONAL
2013-12-18	LOC102555652	uncharacterized LOC102555652			Symbol and Name status set to provisional	70820	PROVISIONAL
2012-10-24	Ccdc178	coiled-coil domain containing 178	RGD1308160	similar to Myosin heavy chain A (MHC A)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1308160	similar to Myosin heavy chain A (MHC A)	RGD1308160_predicted	similar to Myosin heavy chain A (MHC A) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1308160_predicted	similar to Myosin heavy chain A (MHC A) (predicted)	LOC307556_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC307556_predicted	similar to Myosin heavy chain A (MHC A) (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

Below cutoff