C17h7orf25 (similar to human chromosome 7 open reading frame 25) - Rat Genome Database

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Gene: C17h7orf25 (similar to human chromosome 7 open reading frame 25) Rattus norvegicus
Analyze
Symbol: C17h7orf25 (Ensembl: RGD1308147)
Name: similar to human chromosome 7 open reading frame 25 (Ensembl:similar to expressed sequence AW209491)
RGD ID: 1308147
Description: Orthologous to human C7orf25 (chromosome 7 open reading frame 25); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; finasteride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC307008; LOC307008; MGC105979; RGD1308147; similar to expressed sequence AW209491; UPF0415 protein C7orf25 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81755,238,751 - 55,245,399 (-)NCBIGRCr8
mRatBN7.21750,543,231 - 50,549,880 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1750,542,858 - 50,549,976 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1753,716,099 - 53,722,777 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01757,719,017 - 57,725,695 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01751,820,131 - 51,826,812 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01753,080,629 - 53,087,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1753,080,638 - 53,087,274 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01750,780,388 - 50,787,041 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41758,724,997 - 58,731,637 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11758,727,841 - 58,734,478 (-)NCBI
Celera1746,575,732 - 46,582,398 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334  


Genomics

Comparative Map Data
C17h7orf25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81755,238,751 - 55,245,399 (-)NCBIGRCr8
mRatBN7.21750,543,231 - 50,549,880 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1750,542,858 - 50,549,976 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1753,716,099 - 53,722,777 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01757,719,017 - 57,725,695 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01751,820,131 - 51,826,812 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01753,080,629 - 53,087,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1753,080,638 - 53,087,274 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01750,780,388 - 50,787,041 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41758,724,997 - 58,731,637 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11758,727,841 - 58,734,478 (-)NCBI
Celera1746,575,732 - 46,582,398 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
C7orf25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38742,909,273 - 42,912,070 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl742,909,273 - 42,912,305 (-)EnsemblGRCh38hg38GRCh38
GRCh37742,948,872 - 42,951,669 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36742,915,397 - 42,918,214 (-)NCBINCBI36Build 36hg18NCBI36
Build 34742,722,113 - 42,724,897NCBI
Celera742,939,193 - 42,942,010 (-)NCBICelera
Cytogenetic Map7p14.1NCBI
HuRef742,833,689 - 42,836,506 (-)NCBIHuRef
CHM1_1742,952,434 - 42,955,251 (-)NCBICHM1_1
T2T-CHM13v2.0743,067,417 - 43,070,214 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2742,988,383 - 42,991,200 (-)NCBI
AW209491
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391314,804,830 - 14,812,787 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1314,804,739 - 14,813,681 (+)EnsemblGRCm39 Ensembl
GRCm381314,630,245 - 14,638,202 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1314,630,154 - 14,639,096 (+)EnsemblGRCm38mm10GRCm38
MGSCv371314,722,512 - 14,730,469 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361314,422,403 - 14,431,222 (+)NCBIMGSCv36mm8
Celera1314,936,524 - 14,944,233 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map135.36NCBI
CUNH7orf25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955460894,516 - 898,445 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955460895,201 - 897,703 (+)NCBIChiLan1.0ChiLan1.0
C6H7orf25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2645,523,432 - 45,526,896 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1793,847,993 - 93,851,639 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0741,324,323 - 41,328,636 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1741,368,264 - 41,371,626 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl741,368,665 - 41,371,626 (+)Ensemblpanpan1.1panPan2
C18H7orf25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1187,232,823 - 7,236,830 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl187,234,687 - 7,235,952 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha187,083,673 - 7,087,747 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0187,279,771 - 7,283,856 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl187,280,224 - 7,283,854 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1187,262,813 - 7,266,876 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0187,232,071 - 7,236,142 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0187,344,869 - 7,348,942 (+)NCBIUU_Cfam_GSD_1.0
CUNH7orf25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511898,864,831 - 98,871,901 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647818,076,572 - 18,079,310 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647818,076,562 - 18,079,316 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C18H7orf25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1851,924,280 - 51,928,145 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11851,924,285 - 51,928,154 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21856,949,181 - 56,953,045 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH7orf25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12115,691,880 - 15,694,682 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660626,794,059 - 6,797,036 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH7orf25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474018,246,616 - 18,249,074 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474018,246,617 - 18,249,056 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C17h7orf25
38 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:273
Count of miRNA genes:176
Interacting mature miRNAs:199
Transcripts:ENSRNOT00000020794
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174135465160463643Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1358295Aocep1Aortic cell protein QTL 16.17e-07thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 49 41 1 41 5 7 74 35 35 11 5
Low 8 8 18 3 4 6 3
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000020794   ⟹   ENSRNOP00000020794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1750,542,858 - 50,549,976 (-)Ensembl
Rnor_6.0 Ensembl1753,080,638 - 53,087,274 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114031   ⟹   ENSRNOP00000088598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1750,543,240 - 50,549,884 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114059   ⟹   ENSRNOP00000096046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1750,542,858 - 50,549,976 (-)Ensembl
RefSeq Acc Id: NM_001014010   ⟹   NP_001014032
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81755,238,751 - 55,245,399 (-)NCBI
mRatBN7.21750,543,231 - 50,549,880 (-)NCBI
Rnor_6.01753,080,634 - 53,087,274 (-)NCBI
Rnor_5.01750,780,388 - 50,787,041 (-)NCBI
RGSC_v3.41758,724,997 - 58,731,637 (-)RGD
Celera1746,575,732 - 46,582,398 (-)RGD
Sequence:
RefSeq Acc Id: NM_001419483   ⟹   NP_001406412
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81755,238,751 - 55,245,399 (-)NCBI
mRatBN7.21750,543,231 - 50,549,880 (-)NCBI
RefSeq Acc Id: NM_001419484   ⟹   NP_001406413
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81755,238,751 - 55,245,399 (-)NCBI
mRatBN7.21750,543,231 - 50,549,880 (-)NCBI
RefSeq Acc Id: NM_001419485   ⟹   NP_001406414
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81755,238,751 - 55,245,399 (-)NCBI
mRatBN7.21750,543,231 - 50,549,880 (-)NCBI
RefSeq Acc Id: NP_001014032   ⟸   NM_001014010
- UniProtKB: Q5M888 (UniProtKB/Swiss-Prot),   A6K9C0 (UniProtKB/TrEMBL),   A0A8I6AA39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000020794   ⟸   ENSRNOT00000020794
RefSeq Acc Id: ENSRNOP00000096046   ⟸   ENSRNOT00000114059
RefSeq Acc Id: ENSRNOP00000088598   ⟸   ENSRNOT00000114031
RefSeq Acc Id: NP_001406414   ⟸   NM_001419485
- UniProtKB: Q5M888 (UniProtKB/Swiss-Prot),   A0A8I6AA39 (UniProtKB/TrEMBL),   A6K9C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406413   ⟸   NM_001419484
- UniProtKB: Q5M888 (UniProtKB/Swiss-Prot),   A0A8I6AA39 (UniProtKB/TrEMBL),   A6K9C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406412   ⟸   NM_001419483
- UniProtKB: Q5M888 (UniProtKB/Swiss-Prot),   A0A8I6AA39 (UniProtKB/TrEMBL),   A6K9C0 (UniProtKB/TrEMBL)
Protein Domains
DUF1308   DUF5614

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M888-F1-model_v2 AlphaFold Q5M888 1-421 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700513
Promoter ID:EPDNEW_R11036
Type:multiple initiation site
Name:RGD1308147_1
Description:similar to expressed sequence AW209491
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01753,087,282 - 53,087,342EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308147 AgrOrtholog
BioCyc Gene G2FUF-9071 BioCyc
Ensembl Genes ENSRNOG00000015523 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00065018375 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000020794 ENTREZGENE
  ENSRNOT00000020794.6 UniProtKB/Swiss-Prot
  ENSRNOT00000114031.1 UniProtKB/TrEMBL
  ENSRNOT00000114059 ENTREZGENE
  ENSRNOT00000114059.1 UniProtKB/Swiss-Prot
  ENSRNOT00065030815 UniProtKB/Swiss-Prot
  ENSRNOT00065030822 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7302860 IMAGE-MGC_LOAD
  IMAGE:7322765 IMAGE-MGC_LOAD
InterPro DUF1308 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF5614 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:307008 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105979 IMAGE-MGC_LOAD
  MGC:108798 IMAGE-MGC_LOAD
NCBI Gene 307008 ENTREZGENE
PANTHER UNCHARACTERIZED DUF1308 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UPF0415 PROTEIN C7ORF25 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1308 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF5614 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen C17h7orf25 PhenoGen
RatGTEx ENSRNOG00000015523 RatGTEx
  ENSRNOG00065018375 RatGTEx
UniProt A0A8I6AA39 ENTREZGENE, UniProtKB/TrEMBL
  A6K9C0 ENTREZGENE, UniProtKB/TrEMBL
  CG025_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C17h7orf25  similar to human chromosome 7 open reading frame 25  RGD1308147  similar to expressed sequence AW209491  Symbol and Name Changed 1299863 APPROVED
2005-12-06 RGD1308147  similar to expressed sequence AW209491  RGD1308147_predicted  similar to expressed sequence AW209491 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308147_predicted  similar to expressed sequence AW209491 (predicted)  LOC307008_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC307008_predicted  similar to expressed sequence AW209491 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL