Ergic3 (ERGIC and golgi 3) - Rat Genome Database

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Gene: Ergic3 (ERGIC and golgi 3) Rattus norvegicus
Analyze
Symbol: Ergic3
Name: ERGIC and golgi 3
RGD ID: 1308144
Description: Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; positive regulation of intracellular protein transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in Golgi apparatus and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be part of retrograde transporter complex, Golgi to ER. Predicted to be active in COPII-coated ER to Golgi transport vesicle; Golgi membrane; and endoplasmic reticulum membrane. Orthologous to human ERGIC3 (ERGIC and golgi 3); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: endoplasmic reticulum-Golgi intermediate compartment protein 3; LOC296306; Sdbcag84; serologically defined breast cancer antigen 84
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,985,108 - 164,994,897 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3164,984,853 - 164,994,897 (+)EnsemblGRCr8
mRatBN7.23144,525,059 - 144,534,813 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,525,092 - 144,534,813 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3148,390,685 - 148,400,411 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,007,963 - 157,017,689 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,747,487 - 154,757,213 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,553,567 - 151,563,318 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,553,578 - 151,563,364 (+)Ensemblrn6Rnor6.0
Rnor_5.03157,918,091 - 157,927,936 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43146,416,599 - 146,426,325 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3143,246,844 - 143,256,571 (+)NCBICelera
RGSC_v3.13146,322,101 - 146,331,944 (+)NCBI
Cytogenetic Map3q42NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Endoplasmic reticulum-Golgi intermediate compartment protein 3 knockdown suppresses lung cancer through endoplasmic reticulum stress-induced autophagy. Hong SH, etal., Oncotarget. 2016 Oct 4;7(40):65335-65347. doi: 10.18632/oncotarget.11678.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Suppression subtractive hybridization identified differentially expressed genes in lung adenocarcinoma: ERGIC3 as a novel lung cancer-related gene. Wu M, etal., BMC Cancer. 2013 Feb 1;13:44. doi: 10.1186/1471-2407-13-44.
Additional References at PubMed
PMID:19946888  


Genomics

Comparative Map Data
Ergic3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,985,108 - 164,994,897 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3164,984,853 - 164,994,897 (+)EnsemblGRCr8
mRatBN7.23144,525,059 - 144,534,813 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,525,092 - 144,534,813 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3148,390,685 - 148,400,411 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,007,963 - 157,017,689 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,747,487 - 154,757,213 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,553,567 - 151,563,318 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,553,578 - 151,563,364 (+)Ensemblrn6Rnor6.0
Rnor_5.03157,918,091 - 157,927,936 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43146,416,599 - 146,426,325 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3143,246,844 - 143,256,571 (+)NCBICelera
RGSC_v3.13146,322,101 - 146,331,944 (+)NCBI
Cytogenetic Map3q42NCBI
ERGIC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,542,078 - 35,557,634 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,542,038 - 35,557,634 (+)Ensemblhg38GRCh38
GRCh372034,129,827 - 34,145,405 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,593,192 - 33,608,819 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342033,593,191 - 33,608,818NCBI
Celera2030,878,102 - 30,893,718 (+)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,907,313 - 30,922,911 (+)NCBIHuRef
CHM1_12034,031,121 - 34,046,732 (+)NCBICHM1_1
T2T-CHM13v2.02037,262,891 - 37,278,470 (+)NCBIT2T-CHM13v2.0
Ergic3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,849,948 - 155,860,199 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,849,965 - 155,860,199 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382156,008,028 - 156,018,279 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,008,045 - 156,018,279 (+)Ensemblmm10GRCm38
MGSCv372155,833,861 - 155,844,015 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362155,699,558 - 155,709,720 (+)NCBIMGSCv36mm8
Celera2161,941,989 - 161,952,143 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.32NCBI
Ergic3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542225,884,080 - 25,893,236 (-)Ensembl
ChiLan1.0NW_00495542225,884,138 - 25,893,237 (-)NCBIChiLan1.0ChiLan1.0
ERGIC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,272,567 - 41,288,267 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,265,670 - 41,281,370 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,867,571 - 31,883,181 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,986,131 - 33,001,737 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,986,131 - 33,001,737 (+)EnsemblpanPan2panpan1.1
ERGIC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,494,494 - 24,508,114 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,494,524 - 24,508,113 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2424,139,705 - 24,153,330 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02425,187,036 - 25,200,658 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2425,187,082 - 25,200,658 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,473,444 - 24,487,049 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,568,398 - 24,582,205 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02425,007,842 - 25,021,464 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ergic3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,479,456 - 173,493,099 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,256,417 - 5,270,344 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,256,450 - 5,270,073 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERGIC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,885,117 - 38,899,138 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11738,884,830 - 38,899,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,006,025 - 44,020,021 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103220919
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,474,811 - 56,482,788 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660872,718,121 - 2,822,817 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ergic3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248423,872,518 - 3,881,937 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248423,872,518 - 3,881,994 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Ergic3
56 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:58
Interacting mature miRNAs:61
Transcripts:ENSRNOT00000045484
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161799493176036425Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3141508991166376254Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3160357340167835660Rat

Markers in Region
stSG636695  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83164,985,236 - 164,985,467 (+)Marker Load Pipeline
mRatBN7.23144,525,152 - 144,525,383 (+)MAPPERmRatBN7.2
Rnor_6.03151,553,658 - 151,553,888NCBIRnor6.0
Rnor_5.03157,918,276 - 157,918,506UniSTSRnor5.0
RGSC_v3.43146,416,665 - 146,416,895UniSTSRGSC3.4
Celera3143,246,910 - 143,247,140UniSTS
Cytogenetic Map3q42UniSTS
MARC_26120-26121:1030366872:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83164,987,325 - 164,988,135 (+)Marker Load Pipeline
mRatBN7.23144,527,241 - 144,528,051 (+)MAPPERmRatBN7.2
Rnor_6.03151,555,747 - 151,556,556NCBIRnor6.0
Rnor_5.03157,920,365 - 157,921,174UniSTSRnor5.0
RGSC_v3.43146,418,754 - 146,419,563UniSTSRGSC3.4
Celera3143,248,999 - 143,249,808UniSTS
Cytogenetic Map3q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000045484   ⟹   ENSRNOP00000044589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3164,984,952 - 164,994,893 (+)Ensembl
mRatBN7.2 Ensembl3144,525,099 - 144,534,810 (+)Ensembl
Rnor_6.0 Ensembl3151,553,578 - 151,563,364 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105359   ⟹   ENSRNOP00000076868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3164,985,140 - 164,994,893 (+)Ensembl
mRatBN7.2 Ensembl3144,525,104 - 144,534,810 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106913   ⟹   ENSRNOP00000080486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3164,984,853 - 164,994,897 (+)Ensembl
mRatBN7.2 Ensembl3144,525,092 - 144,534,813 (+)Ensembl
RefSeq Acc Id: NM_001106533   ⟹   NP_001100003
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83164,985,171 - 164,994,897 (+)NCBI
mRatBN7.23144,525,087 - 144,534,813 (+)NCBI
Rnor_6.03151,553,592 - 151,563,318 (+)NCBI
Rnor_5.03157,918,091 - 157,927,936 (+)NCBI
RGSC_v3.43146,416,599 - 146,426,325 (+)RGD
Celera3143,246,844 - 143,256,571 (+)RGD
Sequence:
RefSeq Acc Id: XM_006235314   ⟹   XP_006235376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83164,985,108 - 164,994,894 (+)NCBI
mRatBN7.23144,525,059 - 144,534,810 (+)NCBI
Rnor_6.03151,553,567 - 151,563,315 (+)NCBI
Rnor_5.03157,918,091 - 157,927,936 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001100003 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417158 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235376 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL85880 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000044589
  ENSRNOP00000044589.4
  ENSRNOP00000076868.1
  ENSRNOP00000080486
  ENSRNOP00000080486.1
RefSeq Acc Id: NP_001100003   ⟸   NM_001106533
- UniProtKB: D3ZU83 (UniProtKB/TrEMBL),   A6KI75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235376   ⟸   XM_006235314
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000044589   ⟸   ENSRNOT00000045484
Ensembl Acc Id: ENSRNOP00000080486   ⟸   ENSRNOT00000106913
Ensembl Acc Id: ENSRNOP00000076868   ⟸   ENSRNOT00000105359
Protein Domains
Endoplasmic reticulum vesicle transporter C-   Endoplasmic reticulum vesicle transporter N-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZU83-F1-model_v2 AlphaFold D3ZU83 1-383 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692592
Promoter ID:EPDNEW_R3117
Type:initiation region
Name:Ergic3_1
Description:ERGIC and golgi 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03151,553,613 - 151,553,673EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308144 AgrOrtholog
BioCyc Gene G2FUF-47110 BioCyc
Ensembl Genes ENSRNOG00000031085 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045484 ENTREZGENE
  ENSRNOT00000045484.5 UniProtKB/TrEMBL
  ENSRNOT00000105359.1 UniProtKB/TrEMBL
  ENSRNOT00000106913 ENTREZGENE
  ENSRNOT00000106913.1 UniProtKB/TrEMBL
InterPro DUF1692 UniProtKB/TrEMBL
  Erv UniProtKB/TrEMBL
  Erv_N UniProtKB/TrEMBL
KEGG Report rno:296306 UniProtKB/TrEMBL
NCBI Gene 296306 ENTREZGENE
PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 3 UniProtKB/TrEMBL
  PTHR10984 UniProtKB/TrEMBL
Pfam DUF1692 UniProtKB/TrEMBL
  ERGIC_N UniProtKB/TrEMBL
PhenoGen Ergic3 PhenoGen
RatGTEx ENSRNOG00000031085 RatGTEx
UniProt A0A8I5Y0G1_RAT UniProtKB/TrEMBL
  A0A8I5ZPQ1_RAT UniProtKB/TrEMBL
  A6KI75 ENTREZGENE, UniProtKB/TrEMBL
  D3ZU83 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ergic3  ERGIC and golgi 3   Ergic3_predicted  ERGIC and golgi 3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Ergic3_predicted  ERGIC and golgi 3 (predicted)  Sdbcag84_predicted  serologically defined breast cancer antigen 84 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Sdbcag84_predicted  serologically defined breast cancer antigen 84 (predicted)      Symbol and Name status set to approved 70820 APPROVED