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Gene: Tmem161a (transmembrane protein 161A) Rattus norvegicus

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Symbol:

Tmem161a

Name:

transmembrane protein 161A

RGD ID:

1307703

Description:

Predicted to be involved in several processes, including cellular response to UV; regulation of cellular response to stress; and response to retinoic acid. Predicted to be located in membrane. Orthologous to human TMEM161A (transmembrane protein 161A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC364535; RGD1307703; similar to hypothetical protein FLJ20422

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM161A (transmembrane protein 161A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tmem161a (transmembrane protein 161A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem161a (transmembrane protein 161A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM161A (transmembrane protein 161A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM161A (transmembrane protein 161A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem161a (transmembrane protein 161A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM161A (transmembrane protein 161A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM161A (transmembrane protein 161A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem161a (transmembrane protein 161A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tmem161a (transmembrane protein 161A)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM161A (transmembrane protein 161A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem161a (transmembrane protein 161A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y87G2A.13	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7638	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tmem161a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	19,272,433 - 19,282,173 (-)	NCBI		GRCr8
mRatBN7.2	16	19,237,638 - 19,248,151 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	19,238,487 - 19,248,087 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	19,278,142 - 19,287,749 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,410,467 - 20,420,067 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,331,102 - 19,340,709 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	20,985,841 - 20,996,351 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,986,687 - 20,994,379 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,835,785 - 20,846,295 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,721,497 - 19,731,098 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	19,722,171 - 19,731,083 (-)	NCBI
Celera	16	19,427,132 - 19,436,733 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ISO)

progressive myoclonus epilepsy 8 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

decabromodiphenyl ether (EXP)

Dibutyl phosphate (ISO)

folic acid (ISO)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

methimazole (EXP)

N-methyl-4-phenylpyridinium (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

thioacetamide (EXP)

thiram (ISO)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to oxidative stress (ISO)

cellular response to UV (ISO)

negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage (ISO)

positive regulation of DNA repair (ISO)

response to retinoic acid (ISO)

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16551573

Genomics

Comparative Map Data

Tmem161a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	19,272,433 - 19,282,173 (-)	NCBI		GRCr8
mRatBN7.2	16	19,237,638 - 19,248,151 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	19,238,487 - 19,248,087 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	19,278,142 - 19,287,749 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,410,467 - 20,420,067 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,331,102 - 19,340,709 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	20,985,841 - 20,996,351 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,986,687 - 20,994,379 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,835,785 - 20,846,295 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,721,497 - 19,731,098 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	19,722,171 - 19,731,083 (-)	NCBI
Celera	16	19,427,132 - 19,436,733 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

TMEM161A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	19,119,169 - 19,138,478 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	19,119,169 - 19,138,513 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	19,229,978 - 19,249,287 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	19,091,430 - 19,110,267 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	19,135,267 - 19,154,101 (-)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	18,794,915 - 18,813,863 (-)	NCBI		HuRef
CHM1_1	19	19,230,139 - 19,249,025 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	19,255,708 - 19,275,014 (-)	NCBI		T2T-CHM13v2.0

Tmem161a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,624,979 - 70,636,331 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	70,625,006 - 70,636,331 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	70,172,329 - 70,183,681 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,172,356 - 70,183,681 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	72,696,310 - 72,707,562 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	73,101,398 - 73,112,652 (+)	NCBI		MGSCv36	mm8
Celera	8	72,727,873 - 72,739,551 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.15	NCBI

Tmem161a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,666,885 - 2,674,215 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	2,667,089 - 2,674,550 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM161A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	23,982,028 - 24,000,981 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	22,988,175 - 23,007,097 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	18,557,799 - 18,576,722 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	19,560,046 - 19,578,779 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	19,560,046 - 19,578,779 (-)	Ensembl	panpan1.1		panPan2

TMEM161A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	44,021,722 - 44,037,985 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	44,020,919 - 44,037,938 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	43,938,526 - 43,954,585 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	44,509,581 - 44,525,939 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	44,509,655 - 44,525,939 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	43,746,934 - 43,763,372 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	44,156,409 - 44,172,432 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	44,431,810 - 44,448,294 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem161a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	202,725,769 - 202,737,629 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	2,274,989 - 2,287,580 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	2,274,989 - 2,287,288 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM161A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	58,728,813 - 58,744,937 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	58,728,738 - 58,744,939 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TMEM161A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	17,586,202 - 17,604,835 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	17,584,268 - 17,601,206 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	1,715,635 - 1,734,859 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem161a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	2,056,885 - 2,061,872 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	2,056,642 - 2,064,137 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tmem161a
29 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	105
Count of miRNA genes:	88
Interacting mature miRNAs:	101
Transcripts:	ENSRNOT00000027639
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	19004435	75226532	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
631517	Scl9	Serum cholesterol level QTL 9	3.3		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	16	15726433	21034895	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat

Markers in Region

D16Got18

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	19,248,202 - 19,248,422 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	20,996,403 - 20,996,618	NCBI	Rnor6.0
Rnor_5.0	16	20,846,347 - 20,846,562	UniSTS	Rnor5.0
RGSC_v3.4	16	19,731,213 - 19,731,429	RGD	RGSC3.4
RGSC_v3.4	16	19,731,214 - 19,731,429	UniSTS	RGSC3.4
RGSC_v3.1	16	19,731,212 - 19,731,427	RGD
Celera	16	19,436,849 - 19,437,064	UniSTS
RH 3.4 Map	16	228.5	UniSTS
RH 3.4 Map	16	228.5	RGD
RH 2.0 Map	16	183.1	RGD
Cytogenetic Map	16	p14	UniSTS

RH134688

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	19,238,521 - 19,238,704 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	20,986,722 - 20,986,904	NCBI	Rnor6.0
Rnor_5.0	16	20,836,666 - 20,836,848	UniSTS	Rnor5.0
RGSC_v3.4	16	19,721,533 - 19,721,715	UniSTS	RGSC3.4
Celera	16	19,427,168 - 19,427,350	UniSTS
RH 3.4 Map	16	222.3	UniSTS
Cytogenetic Map	16	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC090553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027639 ⟹ ENSRNOP00000027639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	19,238,487 - 19,246,271 (-)	Ensembl
Rnor_6.0 Ensembl	16	20,986,687 - 20,994,379 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100387 ⟹ ENSRNOP00000092050

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	19,238,487 - 19,248,087 (-)	Ensembl

RefSeq Acc Id:

NM_001108874 ⟹ NP_001102344

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,272,433 - 19,282,034 (-)	NCBI
mRatBN7.2	16	19,238,486 - 19,248,087 (-)	NCBI
Rnor_6.0	16	20,986,686 - 20,996,287 (-)	NCBI
Rnor_5.0	16	20,835,785 - 20,846,295 (-)	NCBI
RGSC_v3.4	16	19,721,497 - 19,731,098 (-)	RGD
Celera	16	19,427,132 - 19,436,733 (-)	RGD

Sequence:

show sequence

CCGGGGAGCGGACATGGCGGTCCTTGGAGTGCAGCTGGTGGTGACTCTGTTCACCGCCACCCTC
ATGCACAGGCTGGCCCCACACTGCTCCTTCGCTCGCTGGCTGCTCTGCAATGGCAGTCTGTTCC
GGTACATACACCCGTCAGAGGAGGAACTGCGGGCGCTGGCAGGGAAACCGAGACCCCGGGGCAG
GAAGGAACGGTGGGCAAACAGTCTTCATGATGAGAAGCCACTGTCGGTGCCTCGAGATGCCCAT
TTCCAGCTGGAGACCTGCCCCCTCACTGCTGTGGATGCCCTAGTCCTGCGCTTCTTTCTGGAAT
ACCAGTGGTTCGTCGACTTCGCTGTGTACTCGGTTGGTGTTTACCTCTTCACAGAGGCCTACTA
TTTTGTGTTGGGCCCAGTCCAGGAGACCAACATCGCTGTGTTCTGGTGTCTGCTCACTCTGGCC
TTCTCTCTCAAGGTGTTCCTCATGGTGACCCGACTGTACTTCAGCAGCAAGGAGGGCGGTGAGC
GCTCAGTGTGTCTCTCCTTTGCTTTCCTCTTCCTCCTCTTGGCCATGCTGGTGCAGGTGGTTCG
AGAGGAGACCCTGGAGCTGGGCTTAGAGCCAGGCCTGGCCAGCATGACCCAGCACCTGGAGCCT
GTTCTGAAGAAGCAGGATTGGGACTGGACACTCCCTGTGATCAAGTTGTCCATCCGCCTTGGGC
TGGCAGTGCTAGGCTCCTTGCTGGGCGCCTTCCTCATTTTTCCTGGCCTGAGGCTGGCACAGAC
CCACCAAGATGCGCTAACCCTGTCTGCGGACCGACCGCTGCTACAGCTGCTCCTGCACACCAGC
TTCCTGTCGCCCCTGTGCACCTTGTGGCTCTGGACAAAGCCTGTCGCCCGGGACTTCCTGTACC
AGGCACCCATGAGGAACATGACCTTCTCTGTACCGTCGGAAGAGGTTTTCGACTCCCTGCGCCT
CTGGGTGCTGGTGGTGCTGTGCCTGTTACGGCTGGTAGTGACCCGGCCACACCTGCAGGCCTAC
CTGTGCCTCGCTAAGGCTCGCGTGGAGCAGCTGCGAAAGGAGGCTGGCCGCATTGAGGCCCGAG
AAGTACAGCAGCGGGTGGTCCGGGTGTACTGCTACGTGACAGTGGTGAGCCTGCAGTACCTGAC
TCCACTCATCCTTACTTTGCATTGCACACTGCTGCTCAAGACCCTGGGTGGCTACTCTTGGGCC
CTGAGCCCTACTCCTCACCCACTGGCCCCATCCCAGCCCTCAGAGACTTTGATCTCTGTAGACC
CTGCAGACGAGGCCCAGCAGACTGCAGCCCAGGTCGCAGGGATCCTGGGTGGCCTACTCACACC
CCTTTTCCTCCGAGGTGTGCTGGCCTACATCATCTGGTGGACTGCTGCCTGCCAGCTGCTCTCC
AGCCTCTTCGGCCTCTACTTCCACCAGCACCTGACGGCCTCTTAGCATGAAGGCACGGCATCTG
ATTTCTGCCCACCAGGCCTGGGACTCTGGTGTTTGTGCCTCGGTGTCCTTAGATGACCTAAGGG
TTGGTGGGGGAACTCCCTACCATCTCTCTCACCTCAGTGCCTAGGTCATGAACCTCTTGAAGCA
GTCTCCCCTGGGTCATGATCCCCAAGTGTGTGGGGCACTTTTTACAGAAATGTCCCAGAGACTG
GGGAGATGAGCGGGGAGCCTGGACAGTAAGAGAGGCCTAGGCAGGAGTGGAAACCTGGAGGGCA
GGGGTGTCTAGGAGAGAGCTAGGGGTGGGACTCTGACCTAGCGTCCACACAGCCCTGGCGCCTG
TCACTGTCACCGTCACCAGGAGGGAGGACAAGAGTGTCTGTGCCTGTCTCCTCAGCACACTTGG
GAGGCTGCGGCAGGAGGGTTAGACTAGTAACAAGACTGGAGAACAAGAGAAAAAAAAGGGAGTC
ATGAAAGCTGAGGGGAGAGATGGCTACCACCCTCCAAAGCTGTTTAGATGACAGCTGTCGTGTG
TTTTGAGGCCTTGGTGACTAAGGGTCACCTCCAACTCCAAAGCGGTCCTTTTGCTGACTTGGTG
TGTGTACATGTGTATTTATGAGGTACGCAGACCCTCCTACATTTGTAAATGTGTACTGAGAATA
AAAAGGAGGGCTCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006252913 ⟹ XP_006252975

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,272,433 - 19,282,056 (-)	NCBI
mRatBN7.2	16	19,237,638 - 19,248,109 (-)	NCBI
Rnor_6.0	16	20,985,841 - 20,994,403 (-)	NCBI
Rnor_5.0	16	20,835,785 - 20,846,295 (-)	NCBI

Sequence:

show sequence

TTCTGACCAGAGCTGCCCCTTTAGGCGGTCCTTGGAGTGCAGCTGGTGGTGACTCTGTTCACCG
CCACCCTCATGCACAGGCTGGCCCCACACTGCTCCTTCGCTCGCTGGCTGCTCTGCAATGGCAG
TCTGTTCCGGTACATACACCCGTCAGAGGAGGAACTGCGGGCGCTGGCAGGGAAACCGAGACCC
CGGGGCAGGAAGGAACGACGTCAGCTCTCCCTGTCCCTATGTGCTCAGGTGGGCAAACAGTCTT
CATGATGAGAAGCCACTGTCGGTGCCTCGAGATGCCCATTTCCAGCTGGAGACCTGCCCCCTCA
CTGCTGTGGATGCCCTAGTCCTGCGCTTCTTTCTGGAATACCAGTGGTTCGTCGACTTCGCTGT
GTACTCGGTTGGTGTTTACCTCTTCACAGAGGCCTACTATTTTGTGTTGGGCCCAGTCCAGGAG
ACCAACATCGCTGTGTTCTGGTGTCTGCTCACTCTGGCCTTCTCTCTCAAGGTGTTCCTCATGG
TGACCCGACTGTACTTCAGCAGCAAGGAGGGCGGTGAGCGCTCAGTGTGTCTCTCCTTTGCTTT
CCTCTTCCTCCTCTTGGCCATGCTGGTGCAGGTGGTTCGAGAGGAGACCCTGGAGCTGGGCTTA
GAGCCAGGCCTGGCCAGCATGACCCAGCACCTGGAGCCTGTTCTGAAGAAGCAGGATTGGGACT
GGACACTCCCTGTGATCAAGTTGTCCATCCGCCTTGGGCTGGCAGTGCTAGGCTCCTTGCTGGG
CGCCTTCCTCATTTTTCCTGGCCTGAGGCTGGCACAGACCCACCAAGATGCGCTAACCCTGTCT
GCGGACCGACCGCTGCTACAGCTGCTCCTGCACACCAGCTTCCTGTCGCCCCTGTGCACCTTGT
GGCTCTGGACAAAGCCTGTCGCCCGGGACTTCCTGTACCAGGCACCCATGAGGAACATGACCTT
CTCTGTACCGTCGGAAGAGGTTTTCGACTCCCTGCGCCTCTGGGTGCTGGTGGTGCTGTGCCTG
TTACGGCTGGTAGTGACCCGGCCACACCTGCAGGCCTACCTGTGCCTCGCTAAGGCTCGCGTGG
AGCAGCTGCGAAAGGAGGCTGGCCGCATTGAGGCCCGAGAAGTACAGCAGCGGGTGGTCCGGGT
GTACTGCTACGTGACAGTGGTGAGCCTGCAGTACCTGACTCCACTCATCCTTACTTTGCATTGC
ACACTGCTGCTCAAGACCCTGGGTGGCTACTCTTGGGCCCTGAGCCCTACTCCTCACCCACTGG
CCCCATCCCAGCCCTCAGAGACTTTGATCTCTGTAGACCCTGCAGACGAGGCCCAGCAGACTGC
AGCCCAGGTCGCAGGGATCCTGGGTGGCCTACTCACACCCCTTTTCCTCCGAGGTGTGCTGGCC
TACATCATCTGGTGGACTGCTGCCTGCCAGCTGCTCTCCAGCCTCTTCGGCCTCTACTTCCACC
AGCACCTGACGGCCTCTTAGCATGAAGGCACGGCATCTGATTTCTGCCCACCAGGCCTGGGACT
CTGGTGTTTGTGCCTCGGTGTCCTTAGATGACCTAAGGGTTGGTGGGGGAACTCCCTACCATCT
CTCTCACCTCAGTGCCTAGGTCATGAACCTCTTGAAGCAGTCTCCCCTGGGTCATGATCCCCAA
GTGTGTGGGGCACTTTTTACAGAAATGTCCCAGAGACTGGGGAGATGAGCGGGGAGCCTGGACA
GTAAGAGAGGCCTAGGCAGGAGTGGAAACCTGGAGGGCAGGGGTGTCTAGGAGAGAGCTAGGGG
TGGGACTCTGACCTAGCGTCCACACAGCCCTGGCGCCTGTCACTGTCACCGTCACCAGGAGGGA
GGACAAGAGTGTCTGTGCCTGTCTCCTCAGCACACTTGGGAGGCTGCGGCAGGAGGGTTAGACT
AGTAACAAGACTGGAGAACAAGAGAAAAAAAAGGGAGTCATGAAAGCTGAGGGGAGAGATGGCT
ACCACCCTCCAAAGCTGTTTAGATGACAGCTGTCGTGTGTTTTGAGGCCTTGGTGACTAAGGGT
CACCTCCAACTCCAAAGCGGTCCTTTTGCTGACTTGGTGTGTGTACATGTGTATTTATGAGGTA
CGCAGACCCTCCTACATTTGTAAATGTGTACTGAGAATAAAAAGGAGGGCTCCTGCACTGCTGC
CTTACCATGTCGCCAGTGTGGTCTGGCCCAGTCATGTTCCAAGAACCAACCAGTGCTCAGTCAG
CCTTGAGCCTCCAGGTCTCATGCTGGGGAGAAGGCCCTGGTTTCTGTCCAAGAGGACTTAGAAA
GGTGACTGCCTACGTGCTTGTGAACACGGGTGCTATGACACAATAGATGTATGTGTGAGAGCAG
GGATCAGAGGACAACTTGGCATGCAGATCCGAGCCTTCTGCCTTGAGACAGGGTCTCTTATTTA
CCCCTGAACCCTTCAGGTCGGCCGTGCAACAGGCTTCAGGGAGTCTCTGGTTTCCACTTCCACC
TTGCAGCAGCAGTGCTAGGATTATAGACTTTGCTGCTGTCCCGCTTTATGTGGGCCCTGGGGAC
TTGAACTCAGGTCTTCACGACTGCAGCAAGTATGGCTGACGTGTGTGGTATAGAATCAATGGGA
TTTCCTTGAAGGTCTGTCTGGAGTCTCCCTGCCTCCCAGACTGACCTGACAAGGGCTGTGGATT
CCCATGGGAATCAGGGACAAGCAAGGGAAGAGTGATGCCCAGCAGGGGGCGGAAAAAAGCAGAC
ACCGCTGGAAAGCAAGGCTCTGCTCTGCATTTCAAAACGTAGGGGCACTCCGTGGTGCCAAAGG
GTCCTGCCTCAGACACCGATGAGGGCTGATTGGGGCGGGGCCTCTGCTGAGCATGATGGAGCTC
AGCTGATGACGCTGGAGGTAGGTGGGCCGGCCAGCCAGCGCTTTGTAAGAACTAGAAGCTGGTA
TGGATTATATATCAAATATGTAAGTAAATCTGAGGCACTGTGTTGTTGCAGACTTAGCTACATG
GCTACC

hide sequence

RefSeq Acc Id:

XM_006252914 ⟹ XP_006252976

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,272,433 - 19,282,088 (-)	NCBI
mRatBN7.2	16	19,237,638 - 19,248,151 (-)	NCBI
Rnor_6.0	16	20,985,841 - 20,996,351 (-)	NCBI
Rnor_5.0	16	20,835,785 - 20,846,295 (-)	NCBI

Sequence:

show sequence

CAGCATCCTAATTGGCTGAGATCCCTCAGCGCTTCCCCGCCTCCAGCCTTGTGCCAGTGTGCGC
CCGGGGAGCGGACATGGCGGTCCTTGGAGTGCAGCTGGTGGTGACTCTGTTCACCGCCACCCTC
ATGCACAGGCTGGCCCCACACTGCTCCTTCGCTCGCTGGCTGCTCTGCAATGGCAGTCTGTTCC
GGTACATACACCCGTCAGAGGAGGAACTGCGGGCGCTGGCAGGGAAACCGAGACCCCGGGGCAG
GAAGGAACGGTGGGCAAACAGTCTTCATGATGAGAAGCCACTGTCGGTGCCTCGAGATGCCCAT
TTCCAGCTGGAGACCTGCCCCCTCACTGCTGTGGATGCCCTAGGCCTGGCCAGCATGACCCAGC
ACCTGGAGCCTGTTCTGAAGAAGCAGGATTGGGACTGGACACTCCCTGTGATCAAGTTGTCCAT
CCGCCTTGGGCTGGCAGTGCTAGGCTCCTTGCTGGGCGCCTTCCTCATTTTTCCTGGCCTGAGG
CTGGCACAGACCCACCAAGATGCGCTAACCCTGTCTGCGGACCGACCGCTGCTACAGCTGCTCC
TGCACACCAGCTTCCTGTCGCCCCTGTGCACCTTGTGGCTCTGGACAAAGCCTGTCGCCCGGGA
CTTCCTGTACCAGGCACCCATGAGGAACATGACCTTCTCTGTACCGTCGGAAGAGGTTTTCGAC
TCCCTGCGCCTCTGGGTGCTGGTGGTGCTGTGCCTGTTACGGCTGGTAGTGACCCGGCCACACC
TGCAGGCCTACCTGTGCCTCGCTAAGGCTCGCGTGGAGCAGCTGCGAAAGGAGGCTGGCCGCAT
TGAGGCCCGAGAAGTACAGCAGCGGGTGGTCCGGGTGTACTGCTACGTGACAGTGGTGAGCCTG
CAGTACCTGACTCCACTCATCCTTACTTTGCATTGCACACTGCTGCTCAAGACCCTGGGTGGCT
ACTCTTGGGCCCTGAGCCCTACTCCTCACCCACTGGCCCCATCCCAGCCCTCAGAGACTTTGAT
CTCTGTAGACCCTGCAGACGAGGCCCAGCAGACTGCAGCCCAGGTCGCAGGGATCCTGGGTGGC
CTACTCACACCCCTTTTCCTCCGAGGTGTGCTGGCCTACATCATCTGGTGGACTGCTGCCTGCC
AGCTGCTCTCCAGCCTCTTCGGCCTCTACTTCCACCAGCACCTGACGGCCTCTTAGCATGAAGG
CACGGCATCTGATTTCTGCCCACCAGGCCTGGGACTCTGGTGTTTGTGCCTCGGTGTCCTTAGA
TGACCTAAGGGTTGGTGGGGGAACTCCCTACCATCTCTCTCACCTCAGTGCCTAGGTCATGAAC
CTCTTGAAGCAGTCTCCCCTGGGTCATGATCCCCAAGTGTGTGGGGCACTTTTTACAGAAATGT
CCCAGAGACTGGGGAGATGAGCGGGGAGCCTGGACAGTAAGAGAGGCCTAGGCAGGAGTGGAAA
CCTGGAGGGCAGGGGTGTCTAGGAGAGAGCTAGGGGTGGGACTCTGACCTAGCGTCCACACAGC
CCTGGCGCCTGTCACTGTCACCGTCACCAGGAGGGAGGACAAGAGTGTCTGTGCCTGTCTCCTC
AGCACACTTGGGAGGCTGCGGCAGGAGGGTTAGACTAGTAACAAGACTGGAGAACAAGAGAAAA
AAAAGGGAGTCATGAAAGCTGAGGGGAGAGATGGCTACCACCCTCCAAAGCTGTTTAGATGACA
GCTGTCGTGTGTTTTGAGGCCTTGGTGACTAAGGGTCACCTCCAACTCCAAAGCGGTCCTTTTG
CTGACTTGGTGTGTGTACATGTGTATTTATGAGGTACGCAGACCCTCCTACATTTGTAAATGTG
TACTGAGAATAAAAAGGAGGGCTCCTGCACTGCTGCCTTACCATGTCGCCAGTGTGGTCTGGCC
CAGTCATGTTCCAAGAACCAACCAGTGCTCAGTCAGCCTTGAGCCTCCAGGTCTCATGCTGGGG
AGAAGGCCCTGGTTTCTGTCCAAGAGGACTTAGAAAGGTGACTGCCTACGTGCTTGTGAACACG
GGTGCTATGACACAATAGATGTATGTGTGAGAGCAGGGATCAGAGGACAACTTGGCATGCAGAT
CCGAGCCTTCTGCCTTGAGACAGGGTCTCTTATTTACCCCTGAACCCTTCAGGTCGGCCGTGCA
ACAGGCTTCAGGGAGTCTCTGGTTTCCACTTCCACCTTGCAGCAGCAGTGCTAGGATTATAGAC
TTTGCTGCTGTCCCGCTTTATGTGGGCCCTGGGGACTTGAACTCAGGTCTTCACGACTGCAGCA
AGTATGGCTGACGTGTGTGGTATAGAATCAATGGGATTTCCTTGAAGGTCTGTCTGGAGTCTCC
CTGCCTCCCAGACTGACCTGACAAGGGCTGTGGATTCCCATGGGAATCAGGGACAAGCAAGGGA
AGAGTGATGCCCAGCAGGGGGCGGAAAAAAGCAGACACCGCTGGAAAGCAAGGCTCTGCTCTGC
ATTTCAAAACGTAGGGGCACTCCGTGGTGCCAAAGGGTCCTGCCTCAGACACCGATGAGGGCTG
ATTGGGGCGGGGCCTCTGCTGAGCATGATGGAGCTCAGCTGATGACGCTGGAGGTAGGTGGGCC
GGCCAGCCAGCGCTTTGTAAGAACTAGAAGCTGGTATGGATTATATATCAAATATGTAAGTAAA
TCTGAGGCACTGTGTTGTTGCAGACTTAGCTACATGGCTACC

hide sequence

RefSeq Acc Id:

XM_008771143 ⟹ XP_008769365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,272,433 - 19,282,079 (-)	NCBI
mRatBN7.2	16	19,237,638 - 19,248,126 (-)	NCBI
Rnor_6.0	16	20,985,841 - 20,996,322 (-)	NCBI

Sequence:

show sequence

CGCTTCCCCGCCTCCAGCCTTGTGCCAGTGTGCGCCCGGGGAGCGGACATGTCTGTTCCGGTAC
ATACACCCGTCAGAGGAGGAACTGCGGGCGCTGGCAGGGAAACCGAGACCCCGGGGCAGGAAGG
AACGGTGGGCAAACAGTCTTCATGATGAGAAGCCACTGTCGGTGCCTCGAGATGCCCATTTCCA
GCTGGAGACCTGCCCCCTCACTGCTGTGGATGCCCTAGTCCTGCGCTTCTTTCTGGAATACCAG
TGGTTCGTCGACTTCGCTGTGTACTCGGTTGGTGTTTACCTCTTCACAGAGGCCTACTATTTTG
TGTTGGGCCCAGTCCAGGAGACCAACATCGCTGTGTTCTGGTGTCTGCTCACTCTGGCCTTCTC
TCTCAAGGTGTTCCTCATGGTGACCCGACTGTACTTCAGCAGCAAGGAGGGCGGTGAGCGCTCA
GTGTGTCTCTCCTTTGCTTTCCTCTTCCTCCTCTTGGCCATGCTGGTGCAGGTGGTTCGAGAGG
AGACCCTGGAGCTGGGCTTAGAGCCAGGCCTGGCCAGCATGACCCAGCACCTGGAGCCTGTTCT
GAAGAAGCAGGATTGGGACTGGACACTCCCTGTGATCAAGTTGTCCATCCGCCTTGGGCTGGCA
GTGCTAGGCTCCTTGCTGGGCGCCTTCCTCATTTTTCCTGGCCTGAGGCTGGCACAGACCCACC
AAGATGCGCTAACCCTGTCTGCGGACCGACCGCTGCTACAGCTGCTCCTGCACACCAGCTTCCT
GTCGCCCCTGTGCACCTTGTGGCTCTGGACAAAGCCTGTCGCCCGGGACTTCCTGTACCAGGCA
CCCATGAGGAACATGACCTTCTCTGTACCGTCGGAAGAGGTTTTCGACTCCCTGCGCCTCTGGG
TGCTGGTGGTGCTGTGCCTGTTACGGCTGGTAGTGACCCGGCCACACCTGCAGGCCTACCTGTG
CCTCGCTAAGGCTCGCGTGGAGCAGCTGCGAAAGGAGGCTGGCCGCATTGAGGCCCGAGAAGTA
CAGCAGCGGGTGGTCCGGGTGTACTGCTACGTGACAGTGGTGAGCCTGCAGTACCTGACTCCAC
TCATCCTTACTTTGCATTGCACACTGCTGCTCAAGACCCTGGGTGGCTACTCTTGGGCCCTGAG
CCCTACTCCTCACCCACTGGCCCCATCCCAGCCCTCAGAGACTTTGATCTCTGTAGACCCTGCA
GACGAGGCCCAGCAGACTGCAGCCCAGGTCGCAGGGATCCTGGGTGGCCTACTCACACCCCTTT
TCCTCCGAGGTGTGCTGGCCTACATCATCTGGTGGACTGCTGCCTGCCAGCTGCTCTCCAGCCT
CTTCGGCCTCTACTTCCACCAGCACCTGACGGCCTCTTAGCATGAAGGCACGGCATCTGATTTC
TGCCCACCAGGCCTGGGACTCTGGTGTTTGTGCCTCGGTGTCCTTAGATGACCTAAGGGTTGGT
GGGGGAACTCCCTACCATCTCTCTCACCTCAGTGCCTAGGTCATGAACCTCTTGAAGCAGTCTC
CCCTGGGTCATGATCCCCAAGTGTGTGGGGCACTTTTTACAGAAATGTCCCAGAGACTGGGGAG
ATGAGCGGGGAGCCTGGACAGTAAGAGAGGCCTAGGCAGGAGTGGAAACCTGGAGGGCAGGGGT
GTCTAGGAGAGAGCTAGGGGTGGGACTCTGACCTAGCGTCCACACAGCCCTGGCGCCTGTCACT
GTCACCGTCACCAGGAGGGAGGACAAGAGTGTCTGTGCCTGTCTCCTCAGCACACTTGGGAGGC
TGCGGCAGGAGGGTTAGACTAGTAACAAGACTGGAGAACAAGAGAAAAAAAAGGGAGTCATGAA
AGCTGAGGGGAGAGATGGCTACCACCCTCCAAAGCTGTTTAGATGACAGCTGTCGTGTGTTTTG
AGGCCTTGGTGACTAAGGGTCACCTCCAACTCCAAAGCGGTCCTTTTGCTGACTTGGTGTGTGT
ACATGTGTATTTATGAGGTACGCAGACCCTCCTACATTTGTAAATGTGTACTGAGAATAAAAAG
GAGGGCTCCTGCACTGCTGCCTTACCATGTCGCCAGTGTGGTCTGGCCCAGTCATGTTCCAAGA
ACCAACCAGTGCTCAGTCAGCCTTGAGCCTCCAGGTCTCATGCTGGGGAGAAGGCCCTGGTTTC
TGTCCAAGAGGACTTAGAAAGGTGACTGCCTACGTGCTTGTGAACACGGGTGCTATGACACAAT
AGATGTATGTGTGAGAGCAGGGATCAGAGGACAACTTGGCATGCAGATCCGAGCCTTCTGCCTT
GAGACAGGGTCTCTTATTTACCCCTGAACCCTTCAGGTCGGCCGTGCAACAGGCTTCAGGGAGT
CTCTGGTTTCCACTTCCACCTTGCAGCAGCAGTGCTAGGATTATAGACTTTGCTGCTGTCCCGC
TTTATGTGGGCCCTGGGGACTTGAACTCAGGTCTTCACGACTGCAGCAAGTATGGCTGACGTGT
GTGGTATAGAATCAATGGGATTTCCTTGAAGGTCTGTCTGGAGTCTCCCTGCCTCCCAGACTGA
CCTGACAAGGGCTGTGGATTCCCATGGGAATCAGGGACAAGCAAGGGAAGAGTGATGCCCAGCA
GGGGGCGGAAAAAAGCAGACACCGCTGGAAAGCAAGGCTCTGCTCTGCATTTCAAAACGTAGGG
GCACTCCGTGGTGCCAAAGGGTCCTGCCTCAGACACCGATGAGGGCTGATTGGGGCGGGGCCTC
TGCTGAGCATGATGGAGCTCAGCTGATGACGCTGGAGGTAGGTGGGCCGGCCAGCCAGCGCTTT
GTAAGAACTAGAAGCTGGTATGGATTATATATCAAATATGTAAGTAAATCTGAGGCACTGTGTT
GTTGCAGACTTAGCTACATGGCTACC

hide sequence

RefSeq Acc Id:

XM_039094717 ⟹ XP_038950645

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,272,433 - 19,282,058 (-)	NCBI
mRatBN7.2	16	19,237,638 - 19,248,127 (-)	NCBI

RefSeq Acc Id:

XM_039094719 ⟹ XP_038950647

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,272,433 - 19,282,090 (-)	NCBI
mRatBN7.2	16	19,237,638 - 19,248,151 (-)	NCBI

RefSeq Acc Id:

XM_063275591 ⟹ XP_063131661

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,272,433 - 19,282,056 (-)	NCBI

RefSeq Acc Id:

XM_063275592 ⟹ XP_063131662

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,272,433 - 19,282,173 (-)	NCBI

RefSeq Acc Id:

XM_063275593 ⟹ XP_063131663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,272,433 - 19,282,056 (-)	NCBI

RefSeq Acc Id:

XM_063275594 ⟹ XP_063131664

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	19,272,433 - 19,282,042 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102344	(Get FASTA)	NCBI Sequence Viewer
	XP_006252975	(Get FASTA)	NCBI Sequence Viewer
	XP_006252976	(Get FASTA)	NCBI Sequence Viewer
	XP_008769365	(Get FASTA)	NCBI Sequence Viewer
	XP_038950645	(Get FASTA)	NCBI Sequence Viewer
	XP_038950647	(Get FASTA)	NCBI Sequence Viewer
	XP_063131661	(Get FASTA)	NCBI Sequence Viewer
	XP_063131662	(Get FASTA)	NCBI Sequence Viewer
	XP_063131663	(Get FASTA)	NCBI Sequence Viewer
	XP_063131664	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI61989	(Get FASTA)	NCBI Sequence Viewer
	EDL90657	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027639
	ENSRNOP00000027639.6
	ENSRNOP00000092050
	ENSRNOP00000092050.1

RefSeq Acc Id:	NP_001102344 ⟸ NM_001108874
- Peptide Label:	precursor
- UniProtKB:	B1WC35 (UniProtKB/TrEMBL), F7EZW5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVLGVQLVVTLFTATLMHRLAPHCSFARWLLCNGSLFRYIHPSEEELRALAGKPRPRGRKERW ANSLHDEKPLSVPRDAHFQLETCPLTAVDALVLRFFLEYQWFVDFAVYSVGVYLFTEAYYFVLG PVQETNIAVFWCLLTLAFSLKVFLMVTRLYFSSKEGGERSVCLSFAFLFLLLAMLVQVVREETL ELGLEPGLASMTQHLEPVLKKQDWDWTLPVIKLSIRLGLAVLGSLLGAFLIFPGLRLAQTHQDA LTLSADRPLLQLLLHTSFLSPLCTLWLWTKPVARDFLYQAPMRNMTFSVPSEEVFDSLRLWVLV VLCLLRLVVTRPHLQAYLCLAKARVEQLRKEAGRIEAREVQQRVVRVYCYVTVVSLQYLTPLIL TLHCTLLLKTLGGYSWALSPTPHPLAPSQPSETLISVDPADEAQQTAAQVAGILGGLLTPLFLR GVLAYIIWWTAACQLLSSLFGLYFHQHLTAS hide sequence

RefSeq Acc Id:

XP_006252976 ⟸ XM_006252914

- Peptide Label:

isoform X6

- Sequence:

show sequence

MAVLGVQLVVTLFTATLMHRLAPHCSFARWLLCNGSLFRYIHPSEEELRALAGKPRPRGRKERW
ANSLHDEKPLSVPRDAHFQLETCPLTAVDALGLASMTQHLEPVLKKQDWDWTLPVIKLSIRLGL
AVLGSLLGAFLIFPGLRLAQTHQDALTLSADRPLLQLLLHTSFLSPLCTLWLWTKPVARDFLYQ
APMRNMTFSVPSEEVFDSLRLWVLVVLCLLRLVVTRPHLQAYLCLAKARVEQLRKEAGRIEARE
VQQRVVRVYCYVTVVSLQYLTPLILTLHCTLLLKTLGGYSWALSPTPHPLAPSQPSETLISVDP
ADEAQQTAAQVAGILGGLLTPLFLRGVLAYIIWWTAACQLLSSLFGLYFHQHLTAS

hide sequence

RefSeq Acc Id:	XP_006252975 ⟸ XM_006252913
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GJF5 (UniProtKB/TrEMBL), F7EZW5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVCSGTYTRQRRNCGRWQGNRDPGAGRNDVSSPCPYVLRWANSLHDEKPLSVPRDAHFQLETC PLTAVDALVLRFFLEYQWFVDFAVYSVGVYLFTEAYYFVLGPVQETNIAVFWCLLTLAFSLKVF LMVTRLYFSSKEGGERSVCLSFAFLFLLLAMLVQVVREETLELGLEPGLASMTQHLEPVLKKQD WDWTLPVIKLSIRLGLAVLGSLLGAFLIFPGLRLAQTHQDALTLSADRPLLQLLLHTSFLSPLC TLWLWTKPVARDFLYQAPMRNMTFSVPSEEVFDSLRLWVLVVLCLLRLVVTRPHLQAYLCLAKA RVEQLRKEAGRIEAREVQQRVVRVYCYVTVVSLQYLTPLILTLHCTLLLKTLGGYSWALSPTPH PLAPSQPSETLISVDPADEAQQTAAQVAGILGGLLTPLFLRGVLAYIIWWTAACQLLSSLFGLY FHQHLTAS hide sequence

RefSeq Acc Id:

XP_008769365 ⟸ XM_008771143

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVTRLYFSSKEGGERSVCLSFAFLFLLLAMLVQVVREETLELGLEPGLASMTQHLEPVLKKQDW
DWTLPVIKLSIRLGLAVLGSLLGAFLIFPGLRLAQTHQDALTLSADRPLLQLLLHTSFLSPLCT
LWLWTKPVARDFLYQAPMRNMTFSVPSEEVFDSLRLWVLVVLCLLRLVVTRPHLQAYLCLAKAR
VEQLRKEAGRIEAREVQQRVVRVYCYVTVVSLQYLTPLILTLHCTLLLKTLGGYSWALSPTPHP
LAPSQPSETLISVDPADEAQQTAAQVAGILGGLLTPLFLRGVLAYIIWWTAACQLLSSLFGLYF
HQHLTAS

hide sequence

Ensembl Acc Id:

ENSRNOP00000027639 ⟸ ENSRNOT00000027639

RefSeq Acc Id:	XP_038950647 ⟸ XM_039094719
- Peptide Label:	isoform X3
- UniProtKB:	F7EZW5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950645 ⟸ XM_039094717
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000092050 ⟸ ENSRNOT00000100387

RefSeq Acc Id:	XP_063131662 ⟸ XM_063275592
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063131663 ⟸ XM_063275593
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063131661 ⟸ XM_063275591
- Peptide Label:	isoform X4
- UniProtKB:	F7EZW5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131664 ⟸ XM_063275594
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F7EZW5-F1-model_v2	AlphaFold	F7EZW5	1-478	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307703	AgrOrtholog
BioCyc Gene	G2FUF-11761	BioCyc
Ensembl Genes	ENSRNOG00000020390	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027639	ENTREZGENE
	ENSRNOT00000027639.7	UniProtKB/TrEMBL
	ENSRNOT00000100387	ENTREZGENE
	ENSRNOT00000100387.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:9032206	IMAGE-MGC_LOAD
InterPro	Transmembrane_161AB_prd	UniProtKB/TrEMBL
KEGG Report	rno:364535	UniProtKB/TrEMBL
MGC_CLONE	MGC:187817	IMAGE-MGC_LOAD
NCBI Gene	364535	ENTREZGENE
PANTHER	PTHR13624	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 161A	UniProtKB/TrEMBL
Pfam	Tmemb_161AB	UniProtKB/TrEMBL
PhenoGen	Tmem161a	PhenoGen
RatGTEx	ENSRNOG00000020390	RatGTEx
UniProt	A0A8I6GJF5	ENTREZGENE, UniProtKB/TrEMBL
	B1WC35	ENTREZGENE, UniProtKB/TrEMBL
	F7EZW5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Tmem161a	transmembrane protein 161A	RGD1307703_predicted	similar to hypothetical protein FLJ20422 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1307703_predicted	similar to hypothetical protein FLJ20422 (predicted)	LOC364535_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC364535_predicted	similar to hypothetical protein FLJ20422 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar