Kif20a (kinesin family member 20A) - Rat Genome Database

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Gene: Kif20a (kinesin family member 20A) Rattus norvegicus
Analyze
Symbol: Kif20a
Name: kinesin family member 20A
RGD ID: 1307695
Description: Predicted to enable several functions, including ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in several processes, including microtubule bundle formation; midbody abscission; and regulation of cytokinesis. Predicted to be located in several cellular components, including intercellular bridge; midbody; and spindle. Predicted to be part of kinesin complex. Predicted to be active in microtubule and nucleus. Human ortholog(s) of this gene implicated in restrictive cardiomyopathy. Orthologous to human KIF20A (kinesin family member 20A); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: kinesin-like protein KIF20A; LOC361308
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81826,504,422 - 26,512,908 (+)NCBIGRCr8
mRatBN7.21826,230,294 - 26,238,780 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,230,230 - 26,238,780 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1826,357,675 - 26,366,161 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01827,121,481 - 27,129,979 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01826,456,388 - 26,464,886 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01827,424,328 - 27,432,814 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,424,328 - 27,432,814 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01827,137,685 - 27,146,171 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41827,100,044 - 27,108,530 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11827,126,319 - 27,135,178 (+)NCBI
Celera1825,967,936 - 25,976,422 (+)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-colchicine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
3,4-dichloroaniline  (ISO)
3,7-dihydropurine-6-thione  (EXP)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
adenine  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antimycin A  (ISO)
arsenite(3-)  (ISO)
azathioprine  (ISO)
azoxystrobin  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bicalutamide  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (EXP)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (EXP)
deguelin  (ISO)
diallyl trisulfide  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloroacetic acid  (ISO)
dimethylarsinic acid  (EXP)
dioxygen  (EXP)
diuron  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
fenpyroximate  (ISO)
fipronil  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP,ISO)
gamma-tocopherol  (ISO)
genistein  (ISO)
hydrogen peroxide  (ISO)
hydroxyurea  (ISO)
indole-3-methanol  (EXP)
ivermectin  (ISO)
kainic acid  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
leflunomide  (EXP,ISO)
lidocaine  (EXP)
lipopolysaccharide  (ISO)
lithium atom  (EXP)
lithium hydride  (EXP)
lucanthone  (ISO)
mercaptopurine  (EXP)
methamphetamine  (EXP,ISO)
methimazole  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
mitomycin C  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
niclosamide  (ISO)
O-methyleugenol  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-menthan-3-ol  (ISO)
palbociclib  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenformin  (EXP)
phenobarbital  (ISO)
PhIP  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
pravastatin  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
progesterone  (ISO)
propanal  (ISO)
purine-6-thiol  (EXP)
pyrimidifen  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thifluzamide  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (EXP,ISO)
tocopherol  (ISO)
topotecan  (EXP)
Tributyltin oxide  (ISO)
trichloroethene  (EXP,ISO)
trimellitic anhydride  (ISO)
Triptolide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
zaragozic acid A  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12939256   PMID:15843429   PMID:25036038   PMID:29093437  


Genomics

Comparative Map Data
Kif20a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81826,504,422 - 26,512,908 (+)NCBIGRCr8
mRatBN7.21826,230,294 - 26,238,780 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,230,230 - 26,238,780 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1826,357,675 - 26,366,161 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01827,121,481 - 27,129,979 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01826,456,388 - 26,464,886 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01827,424,328 - 27,432,814 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,424,328 - 27,432,814 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01827,137,685 - 27,146,171 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41827,100,044 - 27,108,530 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11827,126,319 - 27,135,178 (+)NCBI
Celera1825,967,936 - 25,976,422 (+)NCBICelera
Cytogenetic Map18p12NCBI
KIF20A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385138,179,112 - 138,187,723 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5138,178,719 - 138,187,723 (+)EnsemblGRCh38hg38GRCh38
GRCh375137,514,801 - 137,523,412 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,542,784 - 137,551,261 (+)NCBINCBI36Build 36hg18NCBI36
Build 345137,543,247 - 137,551,259NCBI
Celera5133,635,706 - 133,644,693 (+)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5132,705,415 - 132,714,402 (+)NCBIHuRef
CHM1_15136,947,040 - 136,956,027 (+)NCBICHM1_1
T2T-CHM13v2.05138,705,404 - 138,714,015 (+)NCBIT2T-CHM13v2.0
Kif20a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391834,757,677 - 34,766,330 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1834,757,666 - 34,766,330 (+)EnsemblGRCm39 Ensembl
GRCm381834,624,624 - 34,633,277 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1834,624,613 - 34,633,277 (+)EnsemblGRCm38mm10GRCm38
MGSCv371834,784,278 - 34,792,931 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361834,749,796 - 34,758,078 (+)NCBIMGSCv36mm8
Celera1835,077,037 - 35,085,702 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.69NCBI
Kif20a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554182,222,398 - 2,232,775 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554182,222,398 - 2,232,775 (-)NCBIChiLan1.0ChiLan1.0
KIF20A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24133,452,429 - 133,461,478 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15131,591,982 - 131,601,019 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05133,557,456 - 133,566,089 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15139,690,512 - 139,699,446 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5139,690,517 - 139,699,446 (+)Ensemblpanpan1.1panPan2
KIF20A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11125,826,140 - 25,834,220 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1125,825,747 - 25,833,985 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1124,592,059 - 24,604,038 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01126,678,590 - 26,690,572 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1126,679,487 - 26,690,569 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11125,385,711 - 25,397,687 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01125,208,292 - 25,220,262 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01125,872,755 - 25,884,735 (+)NCBIUU_Cfam_GSD_1.0
Kif20a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213154,240,161 - 154,249,493 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365317,361,928 - 7,374,789 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365317,361,928 - 7,371,397 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF20A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2140,202,015 - 140,211,155 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12140,202,316 - 140,213,144 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22145,901,017 - 145,910,033 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KIF20A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12340,848,762 - 40,857,685 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2340,849,108 - 40,857,434 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603437,032,588 - 37,041,180 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kif20a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474330,995,526 - 31,011,396 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474330,994,664 - 31,003,858 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kif20a
20 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:122
Interacting mature miRNAs:135
Transcripts:ENSRNOT00000033784
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat

Markers in Region
RH127370  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,238,464 - 26,238,673 (+)MAPPERmRatBN7.2
Rnor_6.01827,432,499 - 27,432,707NCBIRnor6.0
Rnor_5.01827,145,856 - 27,146,064UniSTSRnor5.0
RGSC_v3.41827,108,215 - 27,108,423UniSTSRGSC3.4
Celera1825,976,107 - 25,976,315UniSTS
RH 3.4 Map18367.8UniSTS
Cytogenetic Map18p12UniSTS
RH131509  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,236,925 - 26,237,129 (+)MAPPERmRatBN7.2
Rnor_6.01827,430,960 - 27,431,163NCBIRnor6.0
Rnor_5.01827,144,317 - 27,144,520UniSTSRnor5.0
RGSC_v3.41827,106,676 - 27,106,879UniSTSRGSC3.4
Celera1825,974,568 - 25,974,771UniSTS
RH 3.4 Map18368.5UniSTS
Cytogenetic Map18p12UniSTS
RH132745  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,238,924 - 26,239,137 (+)MAPPERmRatBN7.2
Rnor_6.01827,432,959 - 27,433,171NCBIRnor6.0
Rnor_5.01827,146,316 - 27,146,528UniSTSRnor5.0
RGSC_v3.41827,108,675 - 27,108,887UniSTSRGSC3.4
Celera1825,976,567 - 25,976,779UniSTS
RH 3.4 Map18368.5UniSTS
Cytogenetic Map18p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000033784   ⟹   ENSRNOP00000037441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1826,230,230 - 26,238,780 (+)Ensembl
Rnor_6.0 Ensembl1827,424,328 - 27,432,814 (+)Ensembl
RefSeq Acc Id: NM_001108426   ⟹   NP_001101896
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,504,422 - 26,512,908 (+)NCBI
mRatBN7.21826,230,294 - 26,238,780 (+)NCBI
Rnor_6.01827,424,328 - 27,432,814 (+)NCBI
Rnor_5.01827,137,685 - 27,146,171 (+)NCBI
RGSC_v3.41827,100,044 - 27,108,530 (+)RGD
Celera1825,967,936 - 25,976,422 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001101896 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI61953 (Get FASTA)   NCBI Sequence Viewer  
  EDL76235 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037441.4
RefSeq Acc Id: NP_001101896   ⟸   NM_001108426
- UniProtKB: B1WC01 (UniProtKB/TrEMBL),   A6J2V3 (UniProtKB/TrEMBL),   F7F7A1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000037441   ⟸   ENSRNOT00000033784
Protein Domains
Kinesin motor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WC01-F1-model_v2 AlphaFold B1WC01 1-888 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700697
Promoter ID:EPDNEW_R11220
Type:initiation region
Name:Kif20a_1
Description:kinesin family member 20A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01827,424,341 - 27,424,401EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307695 AgrOrtholog
BioCyc Gene G2FUF-7952 BioCyc
Ensembl Genes ENSRNOG00000024428 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033784.5 UniProtKB/TrEMBL
Gene3D-CATH 3.40.850.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9026823 IMAGE-MGC_LOAD
InterPro Kinesin-like_fam UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:361308 UniProtKB/TrEMBL
MGC_CLONE MGC:187752 IMAGE-MGC_LOAD
NCBI Gene 361308 ENTREZGENE
PANTHER KINESIN-LIKE PROTEIN KIF20A UniProtKB/TrEMBL
  KINESIN-RELATED UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/TrEMBL
PhenoGen Kif20a PhenoGen
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_DOMAIN1 UniProtKB/TrEMBL
  KINESIN_MOTOR_DOMAIN2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024428 RatGTEx
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A6J2V3 ENTREZGENE, UniProtKB/TrEMBL
  B1WC01 ENTREZGENE
  F7F7A1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B1WC01 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Kif20a  kinesin family member 20A   Kif20a_predicted  kinesin family member 20A (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Kif20a_predicted  kinesin family member 20A (predicted)      Symbol and Name status set to approved 70820 APPROVED