Dmxl1 (Dmx-like 1) - Rat Genome Database

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Gene: Dmxl1 (Dmx-like 1) Rattus norvegicus
Analyze
Symbol: Dmxl1
Name: Dmx-like 1
RGD ID: 1307692
Description: Predicted to be involved in vacuolar acidification. Predicted to be part of RAVE complex. Orthologous to human DMXL1 (Dmx like 1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dmX-like protein 1; LOC307429
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81845,179,505 - 45,349,999 (+)NCBIGRCr8
mRatBN7.21842,993,292 - 43,163,457 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1842,993,340 - 43,163,456 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1845,036,322 - 45,206,529 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01845,757,411 - 45,921,796 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01843,542,215 - 43,712,440 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01844,468,762 - 44,644,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1844,468,784 - 44,642,050 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01843,689,005 - 43,866,902 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41844,819,576 - 44,828,508 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11844,857,206 - 44,981,563 (+)NCBI
Celera1841,218,987 - 41,388,761 (+)NCBICelera
Cytogenetic Map18q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
RAVE complex  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25931508  


Genomics

Comparative Map Data
Dmxl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81845,179,505 - 45,349,999 (+)NCBIGRCr8
mRatBN7.21842,993,292 - 43,163,457 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1842,993,340 - 43,163,456 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1845,036,322 - 45,206,529 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01845,757,411 - 45,921,796 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01843,542,215 - 43,712,440 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01844,468,762 - 44,644,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1844,468,784 - 44,642,050 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01843,689,005 - 43,866,902 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41844,819,576 - 44,828,508 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11844,857,206 - 44,981,563 (+)NCBI
Celera1841,218,987 - 41,388,761 (+)NCBICelera
Cytogenetic Map18q11NCBI
DMXL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385119,071,027 - 119,249,127 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5119,037,772 - 119,249,138 (+)EnsemblGRCh38hg38GRCh38
GRCh375118,406,722 - 118,584,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365118,434,983 - 118,612,721 (+)NCBINCBI36Build 36hg18NCBI36
Build 345118,435,083 - 118,612,721NCBI
Celera5114,354,305 - 114,538,495 (+)NCBICelera
Cytogenetic Map5q23.1NCBI
HuRef5113,594,456 - 113,779,935 (+)NCBIHuRef
CHM1_15117,839,648 - 118,017,742 (+)NCBICHM1_1
T2T-CHM13v2.05119,584,012 - 119,769,943 (+)NCBIT2T-CHM13v2.0
Dmxl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391849,965,657 - 50,098,540 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1849,965,737 - 50,098,540 (+)EnsemblGRCm39 Ensembl
GRCm381849,832,590 - 49,965,473 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1849,832,670 - 49,965,473 (+)EnsemblGRCm38mm10GRCm38
MGSCv371849,992,667 - 50,124,739 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361849,958,327 - 50,090,415 (+)NCBIMGSCv36mm8
Celera1851,159,366 - 51,291,703 (+)NCBICelera
Cytogenetic Map18D1NCBI
cM Map1827.12NCBI
Dmxl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540838,705,595 - 38,848,874 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540838,705,489 - 38,850,770 (+)NCBIChiLan1.0ChiLan1.0
DMXL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24114,334,243 - 114,525,577 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15112,487,976 - 112,679,240 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05114,443,624 - 114,634,900 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15120,229,732 - 120,420,341 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5120,229,875 - 120,418,440 (+)Ensemblpanpan1.1panPan2
DMXL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1118,435,939 - 8,563,525 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl118,436,322 - 8,561,550 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha119,564,594 - 9,692,262 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0118,522,304 - 8,649,885 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl118,522,766 - 8,649,947 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1118,393,926 - 8,519,212 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0118,449,622 - 8,578,309 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0118,707,210 - 8,835,941 (+)NCBIUU_Cfam_GSD_1.0
Dmxl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213131,454,394 - 131,618,420 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367152,013,722 - 2,179,224 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367152,013,745 - 2,177,418 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DMXL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2123,003,086 - 123,141,060 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12123,003,077 - 123,142,865 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22128,440,506 - 128,543,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DMXL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12322,312,178 - 22,488,151 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2322,312,204 - 22,490,906 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603455,827,070 - 56,008,726 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dmxl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247332,440,068 - 2,610,899 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247332,438,874 - 2,610,987 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dmxl1
621 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:17
Count of miRNA genes:15
Interacting mature miRNAs:17
Transcripts:ENSRNOT00000031812
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat

Markers in Region
RH144413  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21843,020,619 - 43,020,787 (+)MAPPERmRatBN7.2
Rnor_6.01844,496,061 - 44,496,228NCBIRnor6.0
Rnor_5.01843,716,691 - 43,716,858UniSTSRnor5.0
RGSC_v3.41844,846,861 - 44,847,028UniSTSRGSC3.4
Celera1841,246,126 - 41,246,293UniSTS
Cytogenetic Map18q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ200391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000031812   ⟹   ENSRNOP00000033699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1842,993,340 - 43,163,456 (+)Ensembl
Rnor_6.0 Ensembl1844,468,784 - 44,642,050 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094956   ⟹   ENSRNOP00000088454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1842,993,340 - 43,163,456 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113305   ⟹   ENSRNOP00000082026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1842,993,340 - 43,163,456 (+)Ensembl
RefSeq Acc Id: NM_001107388   ⟹   NP_001100858
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81845,179,888 - 45,349,999 (+)NCBI
mRatBN7.21842,993,340 - 43,163,457 (+)NCBI
RefSeq Acc Id: XM_006254710   ⟹   XP_006254772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81845,179,506 - 45,349,999 (+)NCBI
mRatBN7.21842,993,292 - 43,163,457 (+)NCBI
Rnor_6.01844,468,762 - 44,643,908 (+)NCBI
Rnor_5.01843,689,005 - 43,866,902 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254711   ⟹   XP_006254773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81845,179,507 - 45,349,999 (+)NCBI
mRatBN7.21842,993,292 - 43,163,457 (+)NCBI
Rnor_6.01844,468,762 - 44,643,908 (+)NCBI
Rnor_5.01843,689,005 - 43,866,902 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254712   ⟹   XP_006254774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81845,179,507 - 45,349,999 (+)NCBI
mRatBN7.21842,993,292 - 43,161,600 (+)NCBI
Rnor_6.01844,468,762 - 44,643,908 (+)NCBI
Rnor_5.01843,689,005 - 43,866,902 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601109   ⟹   XP_017456598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81845,179,505 - 45,320,649 (+)NCBI
mRatBN7.21842,993,292 - 43,134,107 (+)NCBI
Rnor_6.01844,468,762 - 44,615,551 (+)NCBI
Sequence:
RefSeq Acc Id: XP_006254772   ⟸   XM_006254710
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A9G2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254773   ⟸   XM_006254711
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZU67 (UniProtKB/TrEMBL),   A0A8I6A9G2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254774   ⟸   XM_006254712
- Peptide Label: isoform X3
- UniProtKB: D4AA13 (UniProtKB/TrEMBL),   A0A8I6A9G2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456598   ⟸   XM_017601109
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A9G2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000033699   ⟸   ENSRNOT00000031812
RefSeq Acc Id: NP_001100858   ⟸   NM_001107388
- UniProtKB: A6IWZ8 (UniProtKB/TrEMBL),   A0A8I6A9G2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000082026   ⟸   ENSRNOT00000113305
Ensembl Acc Id: ENSRNOP00000088454   ⟸   ENSRNOT00000094956
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307692 AgrOrtholog
BioCyc Gene G2FUF-7556 BioCyc
Ensembl Genes ENSRNOG00000024671 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031812.6 UniProtKB/TrEMBL
  ENSRNOT00000094956.1 UniProtKB/TrEMBL
  ENSRNOT00000113305.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro DmX-like/RAVE_component UniProtKB/TrEMBL
  Rav1p_C UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene 307429 ENTREZGENE
PANTHER DMX-LIKE PROTEIN 1 UniProtKB/TrEMBL
  RABCONNECTIN-RELATED UniProtKB/TrEMBL
Pfam Rav1p_C UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Dmxl1 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024671 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A8I5ZU67 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9G2 ENTREZGENE, UniProtKB/TrEMBL
  A6IWZ8 ENTREZGENE, UniProtKB/TrEMBL
  D4AA13 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Dmxl1  Dmx-like 1   Dmxl1_predicted  Dmx-like 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Dmxl1_predicted  Dmx-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED