Chaf1b (chromatin assembly factor 1 subunit B) - Rat Genome Database

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Gene: Chaf1b (chromatin assembly factor 1 subunit B) Rattus norvegicus
Analyze
Symbol: Chaf1b
Name: chromatin assembly factor 1 subunit B
RGD ID: 1307634
Description: Predicted to be involved in DNA replication-dependent chromatin assembly and nucleosome assembly. Predicted to be located in chromatin and nucleoplasm. Predicted to be part of CAF-1 complex. Predicted to be active in nucleus. Orthologous to human CHAF1B (chromatin assembly factor 1 subunit B); PARTICIPATES IN histone modification pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: chromatin assembly factor 1, subunit B (p60); LOC288242
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81146,670,560 - 46,690,739 (+)NCBIGRCr8
mRatBN7.21133,200,894 - 33,221,076 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,200,981 - 33,221,070 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1141,855,494 - 41,875,617 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01134,526,850 - 34,546,973 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01133,676,813 - 33,696,953 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01134,101,248 - 34,121,371 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1134,101,197 - 34,121,378 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01137,690,476 - 37,710,591 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41134,110,848 - 34,130,928 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11134,167,090 - 34,187,170 (+)NCBI
Celera1135,223,726 - 35,243,858 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-colchicine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP,ISO)
adenine  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
arecoline  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
corosolic acid  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
glycerol 2-phosphate  (ISO)
imiquimod  (ISO)
indometacin  (ISO)
L-ascorbic acid  (ISO)
lidocaine  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
mitomycin C  (ISO)
N-nitrosodiethylamine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
pinosylvin  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
quercetin  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (EXP,ISO)
topotecan  (EXP)
trans-pinosylvin  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
CAF-1 complex  (IBA,IEA,ISO)
chromatin  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA)
protein-containing complex  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Histone chaperones in nucleosome assembly and human disease. Burgess RJ and Zhang Z, Nat Struct Mol Biol. 2013 Jan;20(1):14-22. doi: 10.1038/nsmb.2461.
2. Prognostic significance of EDN/RB, HJURP, p60/CAF-1 and PDLI4, four new markers in high-grade gliomas. de Tayrac M, etal., PLoS One. 2013 Sep 11;8(9):e73332. doi: 10.1371/journal.pone.0073332. eCollection 2013.
3. Antibody against chromatin assembly factor-1 is a novel autoantibody specifically recognized in systemic lupus erythematosus. Doe K, etal., Lupus. 2014 Sep;23(10):1031-41. doi: 10.1177/0961203314536245. Epub 2014 May 16.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Overexpression of Chromatin Assembly Factor-1/p60 helps to predict the prognosis of melanoma patients. Mascolo M, etal., BMC Cancer. 2010 Feb 24;10:63. doi: 10.1186/1471-2407-10-63.
7. Overexpression of chromatin assembly factor-1 p60, poly(ADP-ribose) polymerase 1 and nestin predicts metastasizing behaviour of oral cancer. Mascolo M, etal., Histopathology. 2012 Dec;61(6):1089-105. doi: 10.1111/j.1365-2559.2012.04313.x. Epub 2012 Aug 8.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Overexpression of chromatin assembly factor-1 (CAF-1) p60 is predictive of adverse behaviour of prostatic cancer. Staibano S, etal., Histopathology. 2009 Apr;54(5):580-9. doi: 10.1111/j.1365-2559.2009.03266.x. Epub 2009 Mar 20.
12. The proliferation marker Chromatin Assembly Factor-1 is of clinical value in predicting the biological behaviour of salivary gland tumours. Staibano S, etal., Oncol Rep. 2011 Jan;25(1):13-22.
Additional References at PubMed
PMID:8858152   PMID:12477932   PMID:14718166   PMID:16780588   PMID:34626773  


Genomics

Comparative Map Data
Chaf1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81146,670,560 - 46,690,739 (+)NCBIGRCr8
mRatBN7.21133,200,894 - 33,221,076 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,200,981 - 33,221,070 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1141,855,494 - 41,875,617 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01134,526,850 - 34,546,973 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01133,676,813 - 33,696,953 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01134,101,248 - 34,121,371 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1134,101,197 - 34,121,378 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01137,690,476 - 37,710,591 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41134,110,848 - 34,130,928 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11134,167,090 - 34,187,170 (+)NCBI
Celera1135,223,726 - 35,243,858 (-)NCBICelera
Cytogenetic Map11q11NCBI
CHAF1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382136,385,392 - 36,419,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2136,385,392 - 36,419,015 (+)EnsemblGRCh38hg38GRCh38
GRCh372137,757,690 - 37,791,313 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362136,679,559 - 36,710,995 (+)NCBINCBI36Build 36hg18NCBI36
Build 342136,679,558 - 36,710,994NCBI
Celera2122,956,076 - 22,987,501 (+)NCBICelera
Cytogenetic Map21q22.12-q22.13NCBI
HuRef2123,233,429 - 23,264,863 (+)NCBIHuRef
CHM1_12137,319,551 - 37,350,873 (+)NCBICHM1_1
T2T-CHM13v2.02134,767,975 - 34,801,594 (+)NCBIT2T-CHM13v2.0
Chaf1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391693,680,801 - 93,703,003 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1693,680,789 - 93,703,003 (+)EnsemblGRCm39 Ensembl
GRCm381693,883,900 - 93,906,115 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1693,883,901 - 93,906,115 (+)EnsemblGRCm38mm10GRCm38
MGSCv371693,884,146 - 93,906,351 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361693,772,441 - 93,794,646 (+)NCBIMGSCv36mm8
Celera1694,972,620 - 94,994,875 (+)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1654.96NCBI
Chaf1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540735,602,819 - 35,617,917 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540735,601,992 - 35,618,287 (+)NCBIChiLan1.0ChiLan1.0
CHAF1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22232,506,196 - 32,537,434 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12127,366,151 - 27,397,330 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02122,755,721 - 22,786,958 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12136,113,971 - 36,143,575 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2136,113,971 - 36,143,575 (+)Ensemblpanpan1.1panPan2
CHAF1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13131,599,840 - 31,620,436 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3131,600,448 - 31,619,784 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3130,661,315 - 30,681,936 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03130,902,480 - 30,923,086 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3130,902,540 - 30,923,076 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13130,768,724 - 30,789,563 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03130,782,423 - 30,803,066 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03131,273,564 - 31,294,221 (+)NCBIUU_Cfam_GSD_1.0
Chaf1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497131,178,964 - 31,205,595 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365006,262,229 - 6,288,839 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365006,262,207 - 6,288,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHAF1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13200,048,149 - 200,072,556 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113200,048,096 - 200,074,902 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213210,075,142 - 210,099,935 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHAF1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1280,379,637 - 80,409,626 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl280,380,425 - 80,409,687 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660548,220,489 - 8,249,863 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chaf1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474527,095,361 - 27,117,669 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474527,094,302 - 27,117,957 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chaf1b
100 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000002299
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat

Markers in Region
RH131285  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81146,689,809 - 46,690,614 (+)Marker Load Pipeline
mRatBN7.21133,220,146 - 33,220,951 (+)MAPPERmRatBN7.2
Rnor_6.01134,120,451 - 34,121,255NCBIRnor6.0
Rnor_5.01137,709,671 - 37,710,475UniSTSRnor5.0
RGSC_v3.41134,130,008 - 34,130,812UniSTSRGSC3.4
Celera1135,223,842 - 35,224,646UniSTS
Cytogenetic Map11q11UniSTS
AFM286zb1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21133,207,473 - 33,208,612 (+)MAPPERmRatBN7.2
Rnor_6.01134,107,780 - 34,108,918NCBIRnor6.0
Rnor_5.01137,697,000 - 37,698,138UniSTSRnor5.0
RGSC_v3.41134,117,337 - 34,118,475UniSTSRGSC3.4
Celera1135,236,179 - 35,237,317UniSTS
Cytogenetic Map11q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 217 96 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000002299   ⟹   ENSRNOP00000002299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1133,200,981 - 33,221,070 (+)Ensembl
Rnor_6.0 Ensembl1134,101,197 - 34,121,378 (+)Ensembl
RefSeq Acc Id: NM_001024741   ⟹   NP_001019912
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,670,650 - 46,690,730 (+)NCBI
mRatBN7.21133,200,985 - 33,221,067 (+)NCBI
Rnor_6.01134,101,291 - 34,121,371 (+)NCBI
Rnor_5.01137,690,476 - 37,710,591 (+)NCBI
RGSC_v3.41134,110,848 - 34,130,928 (+)RGD
Celera1135,223,726 - 35,243,858 (-)RGD
Sequence:
RefSeq Acc Id: XM_063270417   ⟹   XP_063126487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,678,392 - 46,690,739 (+)NCBI
RefSeq Acc Id: XR_005491009
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81146,670,560 - 46,690,558 (+)NCBI
mRatBN7.21133,200,894 - 33,220,888 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001019912 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126487 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH97460 (Get FASTA)   NCBI Sequence Viewer  
  EDL76730 (Get FASTA)   NCBI Sequence Viewer  
  EDL76731 (Get FASTA)   NCBI Sequence Viewer  
  EDL76732 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002299
  ENSRNOP00000002299.4
RefSeq Acc Id: NP_001019912   ⟸   NM_001024741
- UniProtKB: Q4V8B4 (UniProtKB/TrEMBL),   F7F971 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002299   ⟸   ENSRNOT00000002299
RefSeq Acc Id: XP_063126487   ⟸   XM_063270417
- Peptide Label: isoform X1
Protein Domains
Chromatin assembly factor 1 subunit B C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V8B4-F1-model_v2 AlphaFold Q4V8B4 1-572 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307634 AgrOrtholog
BioCyc Gene G2FUF-21784 BioCyc
Ensembl Genes ENSRNOG00000001692 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002299 ENTREZGENE
  ENSRNOT00000002299.7 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7457454 IMAGE-MGC_LOAD
InterPro CAF1_p60_C UniProtKB/TrEMBL
  Gprotein_B UniProtKB/TrEMBL
  PTHR15271 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:288242 UniProtKB/TrEMBL
MGC_CLONE MGC:114524 IMAGE-MGC_LOAD
NCBI Gene 288242 ENTREZGENE
PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B UniProtKB/TrEMBL
  PTHR15271 UniProtKB/TrEMBL
Pfam CAF-1_p60_C UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Chaf1b PhenoGen
PRINTS GPROTEINB UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001692 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt F7F971 ENTREZGENE, UniProtKB/TrEMBL
  Q4V8B4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 Chaf1b  chromatin assembly factor 1 subunit B  Chaf1b  chromatin assembly factor 1, subunit B (p60)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Chaf1b  chromatin assembly factor 1, subunit B (p60)  Chaf1b_predicted  chromatin assembly factor 1, subunit B (p60) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Chaf1b_predicted  chromatin assembly factor 1, subunit B (p60) (predicted)      Symbol and Name status set to approved 70820 APPROVED