Celf4 (CUGBP, Elav-like family member 4)

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Gene: Celf4 (CUGBP, Elav-like family member 4) Rattus norvegicus

Analyze

Symbol:

Celf4

Name:

CUGBP, Elav-like family member 4

RGD ID:

1307630

Description:

Predicted to enable mRNA binding activity and pre-mRNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within several processes, including mRNA splicing, via spliceosome; negative regulation of excitatory postsynaptic potential; and regulation of mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and nucleoplasm. Orthologous to human CELF4 (CUGBP Elav-like family member 4); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

bruno-like 4, RNA binding protein; bruno-like 4, RNA binding protein (Drosophila); Brunol4; CUG-BP- and ETR-3-like factor 4; CUGBP Elav-like family member 4; LOC307540

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CELF4 (CUGBP Elav-like family member 4)	HGNC	Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Treefam
Mus musculus (house mouse):	Celf4 (CUGBP, Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Celf4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CELF4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CELF4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC106144891 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CELF4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CELF4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Celf4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PCLAF (PCNA clamp associated factor)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CELF4 (CUGBP Elav-like family member 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Celf4 (CUGBP, Elav-like family member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	celf4 (CUGBP, Elav-like family member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	unc-75	Alliance	DIOPT (Hieranoid\|OMA\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	celf4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	16,786,578 - 17,065,045 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	16,786,867 - 17,064,786 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	16,966,581 - 17,274,337 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	17,749,257 - 18,057,008 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	17,031,257 - 17,309,765 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	17,689,090 - 18,079,835 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	17,698,038 - 17,716,880 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	17,442,710 - 17,830,510 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	17,347,052 - 17,614,411 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	17,374,849 - 17,640,782 (-)	NCBI
Celera	18	16,689,194 - 16,964,152 (-)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

myoepithelioma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

CGP 52608 (ISO)

choline (ISO)

cobalt atom (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

fulvestrant (ISO)

L-methionine (ISO)

methapyrilene (ISO)

methimazole (EXP)

methoxychlor (EXP)

methylmercury chloride (ISO)

paracetamol (ISO)

pentanal (ISO)

propanal (ISO)

propiconazole (EXP)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium fluoride (ISO)

streptozocin (ISO)

sulfadimethoxine (EXP)

trichloroethene (EXP)

triclosan (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alternative mRNA splicing, via spliceosome (ISO)

excitatory postsynaptic potential (ISO)

in utero embryonic development (ISO)

mRNA splice site recognition (ISO)

negative regulation of excitatory postsynaptic potential (ISO)

negative regulation of mRNA splicing, via spliceosome (ISO)

positive regulation of mRNA splicing, via spliceosome (ISO)

regulation of alternative mRNA splicing, via spliceosome (ISO)

regulation of retina development in camera-type eye (ISO)

Cellular Component

cytoplasm (ISO)

nucleoplasm (IEA,ISO)

nucleus (ISO)

postsynapse (IEA)

Molecular Function

mRNA binding (ISO)

pre-mRNA binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11158314	PMID:15009664	PMID:19720736	PMID:21745337	PMID:23636947	PMID:23932931	PMID:27996060

Genomics

Comparative Map Data

Celf4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	16,786,578 - 17,065,045 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	16,786,867 - 17,064,786 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	16,966,581 - 17,274,337 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	17,749,257 - 18,057,008 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	17,031,257 - 17,309,765 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	17,689,090 - 18,079,835 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	17,698,038 - 17,716,880 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	17,442,710 - 17,830,510 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	17,347,052 - 17,614,411 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	17,374,849 - 17,640,782 (-)	NCBI
Celera	18	16,689,194 - 16,964,152 (-)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

CELF4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	37,242,844 - 37,565,798 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	37,243,040 - 37,565,827 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	18	34,823,003 - 35,145,761 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	33,077,828 - 33,399,941 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	18	33,087,771 - 33,399,602	NCBI
Celera	18	31,632,904 - 31,980,932 (-)	NCBI		Celera
Cytogenetic Map	18	q12.2	NCBI
HuRef	18	31,681,881 - 32,004,740 (-)	NCBI		HuRef
CHM1_1	18	34,750,014 - 34,992,394 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	18	37,436,109 - 37,759,418 (-)	NCBI		T2T-CHM13v2.0

Celf4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	25,610,677 - 25,887,577 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	25,610,689 - 25,887,214 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	25,477,620 - 25,754,520 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	25,477,632 - 25,754,157 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	25,636,121 - 25,912,484 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	25,622,125 - 25,897,167 (-)	NCBI		MGSCv36	mm8
Celera	18	25,963,423 - 26,269,707 (-)	NCBI		Celera
Cytogenetic Map	18	A2	NCBI
cM Map	18	13.92	NCBI

Celf4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	23,617,421 - 23,898,347 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	23,607,160 - 23,898,495 (-)	NCBI	ChiLan1.0	ChiLan1.0

CELF4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	18	40,327,510 - 40,650,933 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	30,495,149 - 30,818,358 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	34,052,355 - 34,374,624 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	34,068,123 - 34,374,372 (-)	Ensembl	panpan1.1		panPan2

CELF4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	52,940,941 - 53,012,206 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	52,838,558 - 53,010,041 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	52,129,759 - 52,428,092 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	52,673,506 - 52,972,302 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	52,673,273 - 52,971,138 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	52,364,227 - 52,662,451 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	52,387,439 - 52,685,576 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	52,673,900 - 52,972,133 (+)	NCBI		UU_Cfam_GSD_1.0

LOC106144891
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	48,682,698 - 48,683,334 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936517	8,010,133 - 8,010,721 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CELF4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	121,066,772 - 121,381,028 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	121,065,604 - 121,381,052 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	113,836,533 - 114,193,175 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CELF4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	43,314,960 - 43,635,301 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	43,603,021 - 43,624,537 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	17,860,703 - 18,181,333 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Celf4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624779	11,452,545 - 11,731,251 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624779	11,443,993 - 11,731,208 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Celf4
1258 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	77
Count of miRNA genes:	66
Interacting mature miRNAs:	75
Transcripts:	ENSRNOT00000061151
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	25758124	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	25758124	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)	18	2249477	22066430	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	2249477	22066430	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	11944273	26548295	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	11944273	26548295	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	11944273	26548295	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	11944273	26548295	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	11944273	26548295	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	11944273	26548295	Rat
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944273	26548295	Rat
1331781	Scl28	Serum cholesterol level QTL 28	3.995		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	11944299	24797117	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat

Markers in Region

D18Rat70

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	17,047,551 - 17,047,766 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	18,062,539 - 18,062,751	NCBI	Rnor6.0
Rnor_5.0	18	17,813,214 - 17,813,426	UniSTS	Rnor5.0
RGSC_v3.4	18	17,596,679 - 17,596,891	UniSTS	RGSC3.4
RGSC_v3.4	18	17,596,631 - 17,596,903	RGD	RGSC3.4
RGSC_v3.1	18	17,623,325 - 17,623,537	RGD
Celera	18	16,947,594 - 16,947,806	UniSTS
RH 3.4 Map	18	193.5	RGD
RH 3.4 Map	18	193.5	UniSTS
RH 2.0 Map	18	694.5	RGD
SHRSP x BN Map	18	9.25	RGD
FHH x ACI Map	18	12.22	RGD
Cytogenetic Map	18	p12	UniSTS

D18Rat47

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	17,046,480 - 17,046,730 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	18,061,468 - 18,061,717	NCBI	Rnor6.0
Rnor_5.0	18	17,812,143 - 17,812,392	UniSTS	Rnor5.0
RGSC_v3.4	18	17,595,607 - 17,595,857	RGD	RGSC3.4
RGSC_v3.4	18	17,595,608 - 17,595,857	UniSTS	RGSC3.4
RGSC_v3.1	18	17,622,253 - 17,622,503	RGD
Celera	18	16,946,523 - 16,946,772	UniSTS
SHRSP x BN Map	18	9.29	RGD
SHRSP x BN Map	18	9.29	UniSTS
Cytogenetic Map	18	p12	UniSTS

D18Rat105

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	16,905,110 - 16,905,341 (+)	MAPPER	mRatBN7.2
mRatBN7.2	18	16,905,110 - 16,905,393 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	17,807,783 - 17,808,013	NCBI	Rnor6.0
Rnor_6.0	18	17,807,783 - 17,808,184	NCBI	Rnor6.0
Rnor_5.0	18	17,560,168 - 17,560,569	UniSTS	Rnor5.0
Rnor_5.0	18	17,560,168 - 17,560,398	UniSTS	Rnor5.0
RGSC_v3.4	18	17,452,782 - 17,453,012	UniSTS	RGSC3.4
RGSC_v3.4	18	17,452,781 - 17,453,012	RGD	RGSC3.4
RGSC_v3.1	18	17,479,391 - 17,479,778	RGD
Celera	18	16,805,550 - 16,805,780	UniSTS
SHRSP x BN Map	18	9.25	RGD
SHRSP x BN Map	18	9.25	UniSTS
Cytogenetic Map	18	p12	UniSTS

MDB1448

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	16,786,660 - 16,786,824 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	17,688,885 - 17,689,047	NCBI	Rnor6.0
Rnor_5.0	18	17,442,505 - 17,442,667	UniSTS	Rnor5.0
RGSC_v3.4	18	17,346,847 - 17,347,009	UniSTS	RGSC3.4
Celera	18	16,688,989 - 16,689,151	UniSTS
Cytogenetic Map	18	p12	UniSTS

RH137760

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	16,963,057 - 16,963,212 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	17,865,972 - 17,866,126	NCBI	Rnor6.0
Rnor_5.0	18	17,617,811 - 17,617,965	UniSTS	Rnor5.0
RGSC_v3.4	18	17,511,539 - 17,511,693	UniSTS	RGSC3.4
Celera	18	16,863,351 - 16,863,505	UniSTS
RH 3.4 Map	18	193.6	UniSTS
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									68
Low	3	8	8						6	10	26	1
Below cutoff		18	17	13	7	13	5	6		10	12	10	5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001401250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000061151 ⟹ ENSRNOP00000057864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	16,786,867 - 17,064,786 (-)	Ensembl
Rnor_6.0 Ensembl	18	17,698,038 - 17,716,880 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000107952 ⟹ ENSRNOP00000077924

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	16,786,867 - 17,064,786 (-)	Ensembl

RefSeq Acc Id:

NM_001401250 ⟹ NP_001388179

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,064,903 (-)	NCBI

RefSeq Acc Id:

XM_039096880 ⟹ XP_038952808

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,042 (-)	NCBI

RefSeq Acc Id:

XM_039096881 ⟹ XP_038952809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,042 (-)	NCBI

RefSeq Acc Id:

XM_039096882 ⟹ XP_038952810

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,045 (-)	NCBI

RefSeq Acc Id:

XM_039096883 ⟹ XP_038952811

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,031 (-)	NCBI

RefSeq Acc Id:

XM_039096884 ⟹ XP_038952812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,042 (-)	NCBI

RefSeq Acc Id:

XM_039096885 ⟹ XP_038952813

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,042 (-)	NCBI

RefSeq Acc Id:

XM_039096886 ⟹ XP_038952814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,039 (-)	NCBI

RefSeq Acc Id:

XM_039096887 ⟹ XP_038952815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,039 (-)	NCBI

RefSeq Acc Id:

XM_039096888 ⟹ XP_038952816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,028 (-)	NCBI

RefSeq Acc Id:

XM_039096889 ⟹ XP_038952817

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,027 (-)	NCBI

RefSeq Acc Id:

XM_039096890 ⟹ XP_038952818

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,034 (-)	NCBI

RefSeq Acc Id:

XM_039096891 ⟹ XP_038952819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,033 (-)	NCBI

RefSeq Acc Id:

XM_039096892 ⟹ XP_038952820

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,024 (-)	NCBI

RefSeq Acc Id:

XM_039096893 ⟹ XP_038952821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,023 (-)	NCBI

RefSeq Acc Id:

XM_039096894 ⟹ XP_038952822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,033 (-)	NCBI

RefSeq Acc Id:

XM_039096895 ⟹ XP_038952823

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,024 (-)	NCBI

RefSeq Acc Id:

XM_039096896 ⟹ XP_038952824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,023 (-)	NCBI

RefSeq Acc Id:

XM_039096897 ⟹ XP_038952825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,022 (-)	NCBI

RefSeq Acc Id:

XM_039096898 ⟹ XP_038952826

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,021 (-)	NCBI

RefSeq Acc Id:

XM_039096899 ⟹ XP_038952827

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,024 (-)	NCBI

RefSeq Acc Id:

XM_039096900 ⟹ XP_038952828

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,023 (-)	NCBI

RefSeq Acc Id:

XM_039096901 ⟹ XP_038952829

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,022 (-)	NCBI

RefSeq Acc Id:

XM_039096902 ⟹ XP_038952830

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,021 (-)	NCBI

RefSeq Acc Id:

XM_039096904 ⟹ XP_038952832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,064,903 (-)	NCBI

RefSeq Acc Id:

XM_039096905 ⟹ XP_038952833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,064,903 (-)	NCBI

RefSeq Acc Id:

XM_039096906 ⟹ XP_038952834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,064,903 (-)	NCBI

RefSeq Acc Id:

XM_039096907 ⟹ XP_038952835

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 16,990,025 (-)	NCBI

RefSeq Acc Id:

XM_039096908 ⟹ XP_038952836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,018 (-)	NCBI

RefSeq Acc Id:

XM_039096909 ⟹ XP_038952837

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,017 (-)	NCBI

RefSeq Acc Id:

XM_039096910 ⟹ XP_038952838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 16,990,152 (-)	NCBI

RefSeq Acc Id:

XM_039096911 ⟹ XP_038952839

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,018 (-)	NCBI

RefSeq Acc Id:

XM_039096912 ⟹ XP_038952840

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,017 (-)	NCBI

RefSeq Acc Id:

XM_039096913 ⟹ XP_038952841

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,786,578 - 17,065,027 (-)	NCBI

RefSeq Acc Id:

XR_005496043

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	16,788,595 - 17,065,027 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001388179	(Get FASTA)	NCBI Sequence Viewer
	XP_038952808	(Get FASTA)	NCBI Sequence Viewer
	XP_038952809	(Get FASTA)	NCBI Sequence Viewer
	XP_038952810	(Get FASTA)	NCBI Sequence Viewer
	XP_038952811	(Get FASTA)	NCBI Sequence Viewer
	XP_038952812	(Get FASTA)	NCBI Sequence Viewer
	XP_038952813	(Get FASTA)	NCBI Sequence Viewer
	XP_038952814	(Get FASTA)	NCBI Sequence Viewer
	XP_038952815	(Get FASTA)	NCBI Sequence Viewer
	XP_038952816	(Get FASTA)	NCBI Sequence Viewer
	XP_038952817	(Get FASTA)	NCBI Sequence Viewer
	XP_038952818	(Get FASTA)	NCBI Sequence Viewer
	XP_038952819	(Get FASTA)	NCBI Sequence Viewer
	XP_038952820	(Get FASTA)	NCBI Sequence Viewer
	XP_038952821	(Get FASTA)	NCBI Sequence Viewer
	XP_038952822	(Get FASTA)	NCBI Sequence Viewer
	XP_038952823	(Get FASTA)	NCBI Sequence Viewer
	XP_038952824	(Get FASTA)	NCBI Sequence Viewer
	XP_038952825	(Get FASTA)	NCBI Sequence Viewer
	XP_038952826	(Get FASTA)	NCBI Sequence Viewer
	XP_038952827	(Get FASTA)	NCBI Sequence Viewer
	XP_038952828	(Get FASTA)	NCBI Sequence Viewer
	XP_038952829	(Get FASTA)	NCBI Sequence Viewer
	XP_038952830	(Get FASTA)	NCBI Sequence Viewer
	XP_038952832	(Get FASTA)	NCBI Sequence Viewer
	XP_038952833	(Get FASTA)	NCBI Sequence Viewer
	XP_038952834	(Get FASTA)	NCBI Sequence Viewer
	XP_038952835	(Get FASTA)	NCBI Sequence Viewer
	XP_038952836	(Get FASTA)	NCBI Sequence Viewer
	XP_038952837	(Get FASTA)	NCBI Sequence Viewer
	XP_038952838	(Get FASTA)	NCBI Sequence Viewer
	XP_038952839	(Get FASTA)	NCBI Sequence Viewer
	XP_038952840	(Get FASTA)	NCBI Sequence Viewer
	XP_038952841	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76148	(Get FASTA)	NCBI Sequence Viewer
	EDL76149	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

ENSRNOP00000057864 ⟸ ENSRNOT00000061151

RefSeq Acc Id:	XP_038952810 ⟸ XM_039096882
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038952813 ⟸ XM_039096885
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038952812 ⟸ XM_039096884
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038952809 ⟸ XM_039096881
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038952808 ⟸ XM_039096880
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038952815 ⟸ XM_039096887
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038952814 ⟸ XM_039096886
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038952818 ⟸ XM_039096890
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038952822 ⟸ XM_039096894
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_038952819 ⟸ XM_039096891
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038952811 ⟸ XM_039096883
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038952816 ⟸ XM_039096888
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038952841 ⟸ XM_039096913
- Peptide Label:	isoform X34

RefSeq Acc Id:	XP_038952817 ⟸ XM_039096889
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038952823 ⟸ XM_039096895
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_038952820 ⟸ XM_039096892
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038952827 ⟸ XM_039096899
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_038952824 ⟸ XM_039096896
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_038952821 ⟸ XM_039096893
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_038952828 ⟸ XM_039096900
- Peptide Label:	isoform X21

RefSeq Acc Id:	XP_038952829 ⟸ XM_039096901
- Peptide Label:	isoform X22

RefSeq Acc Id:	XP_038952825 ⟸ XM_039096897
- Peptide Label:	isoform X18

RefSeq Acc Id:	XP_038952830 ⟸ XM_039096902
- Peptide Label:	isoform X23

RefSeq Acc Id:	XP_038952826 ⟸ XM_039096898
- Peptide Label:	isoform X19

RefSeq Acc Id:	XP_038952839 ⟸ XM_039096911
- Peptide Label:	isoform X32

RefSeq Acc Id:	XP_038952836 ⟸ XM_039096908
- Peptide Label:	isoform X29

RefSeq Acc Id:	XP_038952840 ⟸ XM_039096912
- Peptide Label:	isoform X33

RefSeq Acc Id:	XP_038952837 ⟸ XM_039096909
- Peptide Label:	isoform X30

RefSeq Acc Id:	XP_038952834 ⟸ XM_039096906
- Peptide Label:	isoform X27

RefSeq Acc Id:	XP_038952833 ⟸ XM_039096905
- Peptide Label:	isoform X26

RefSeq Acc Id:	XP_038952832 ⟸ XM_039096904
- Peptide Label:	isoform X25

RefSeq Acc Id:	XP_038952838 ⟸ XM_039096910
- Peptide Label:	isoform X31

RefSeq Acc Id:	XP_038952835 ⟸ XM_039096907
- Peptide Label:	isoform X28

RefSeq Acc Id:

ENSRNOP00000077924 ⟸ ENSRNOT00000107952

RefSeq Acc Id:	NP_001388179 ⟸ NM_001401250
- UniProtKB:	A0A8I5ZKE7 (UniProtKB/TrEMBL)

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M6I9-F1-model_v2	AlphaFold	F1M6I9	1-329	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307630	AgrOrtholog
BioCyc Gene	G2FUF-8135	BioCyc
Ensembl Genes	ENSRNOG00000014503	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000057864.5	UniProtKB/TrEMBL
	ENSRNOP00000077924	ENTREZGENE
	ENSRNOP00000077924.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000061151.5	UniProtKB/TrEMBL
	ENSRNOT00000107952	ENTREZGENE
	ENSRNOT00000107952.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	CELF3/4/5/6_RRM1	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
KEGG Report	rno:307540	UniProtKB/TrEMBL
NCBI Gene	307540	ENTREZGENE
PANTHER	CUGBP ELAV-LIKE FAMILY MEMBER 4	UniProtKB/TrEMBL
	RNA BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PhenoGen	Celf4	PhenoGen
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8I5ZKE7	ENTREZGENE, UniProtKB/TrEMBL
	A6J2L7_RAT	UniProtKB/TrEMBL
	F1M6I9_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-28	Celf4	CUGBP, Elav-like family member 4	Brunol4	bruno-like 4, RNA binding protein (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Brunol4	bruno-like 4, RNA binding protein (Drosophila)	Brunol4_predicted	bruno-like 4, RNA binding protein (Drosophila) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Brunol4_predicted	bruno-like 4, RNA binding protein (Drosophila) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar