Kdm6b (lysine demethylase 6B) - Rat Genome Database

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Gene: Kdm6b (lysine demethylase 6B) Rattus norvegicus
Analyze
Symbol: Kdm6b
Name: lysine demethylase 6B
RGD ID: 1307629
Description: Enables chromatin binding activity. Involved in several processes, including hippocampus development; response to activity; and response to fungicide. Predicted to be located in nucleus. Predicted to be part of MLL3/4 complex. Human ortholog(s) of this gene implicated in Stolerman neurodevelopmental syndrome. Orthologous to human KDM6B (lysine demethylase 6B); PARTICIPATES IN histone modification pathway; INTERACTS WITH 17beta-estradiol; 2,2',5,5'-tetrachlorobiphenyl; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Jmjd3; jumonji domain containing 3; jumonji domain-containing 3; LOC363630; lysine (K)-specific demethylase 6B; lysine-specific demethylase 6B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,619,520 - 54,641,014 (-)NCBIGRCr8
mRatBN7.21054,120,716 - 54,142,212 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,121,848 - 54,130,794 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1058,782,470 - 58,803,961 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,271,086 - 58,292,578 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,779,180 - 53,800,683 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,000,494 - 56,009,582 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,001,799 - 56,008,885 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,743,701 - 55,751,368 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,194,131 - 56,202,139 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,207,737 - 56,221,527 (-)NCBI
Celera1053,278,345 - 53,286,159 (-)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
berberine  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP)
buta-1,3-diene  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
camptothecin  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glycidol  (EXP)
hydrogen peroxide  (ISO)
isoprenaline  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
mercury dichloride  (EXP)
methamphetamine  (EXP,ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methimazole  (EXP)
methylisothiazolinone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel dichloride  (ISO)
niclosamide  (ISO)
oxaliplatin  (EXP)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
propiconazole  (EXP,ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
theophylline  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Coexpression of nuclear receptors and histone methylation modifying genes in the testis: implications for endocrine disruptor modes of action. Anderson AM, etal., PLoS One. 2012;7(4):e34158. doi: 10.1371/journal.pone.0034158. Epub 2012 Apr 4.
2. Histone lysine methylation dynamics: establishment, regulation, and biological impact. Black JC, etal., Mol Cell. 2012 Nov 30;48(4):491-507. doi: 10.1016/j.molcel.2012.11.006.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Epigenetic induction of the Ink4a/Arf locus prevents Schwann cell overproliferation during nerve regeneration and after tumorigenic challenge. Gomez-Sanchez JA, etal., Brain. 2013 Jul;136(Pt 7):2262-78. doi: 10.1093/brain/awt130. Epub 2013 Jun 6.
5. High-intensity training induces EIB in rats through neuron transdifferentiation of adrenal medulla chromaffin cells. He R, etal., Am J Physiol Lung Cell Mol Physiol. 2013 May 1;304(9):L602-12. doi: 10.1152/ajplung.00406.2012. Epub 2013 Feb 15.
6. Ezh1 and Ezh2 differentially regulate PSD-95 gene transcription in developing hippocampal neurons. Henriquez B, etal., Mol Cell Neurosci. 2013 Nov;57:130-43. doi: 10.1016/j.mcn.2013.07.012. Epub 2013 Aug 8.
7. Molecular mechanism of Jmjd3-mediated interleukin-6 gene regulation in endothelial cells underlying spinal cord injury. Lee K, etal., J Neurochem. 2012 Jul;122(2):272-82. doi: 10.1111/j.1471-4159.2012.07786.x. Epub 2012 Jun 6.
8. Jmjd3-Mediated H3K27me3 Dynamics Orchestrate Brown Fat Development and Regulate White Fat Plasticity. Pan D, etal., Dev Cell. 2015 Dec 7;35(5):568-583. doi: 10.1016/j.devcel.2015.11.002. Epub 2015 Nov 25.
9. Histone demethylase KDM6B promotes epithelial-mesenchymal transition. Ramadoss S, etal., J Biol Chem. 2012 Dec 28;287(53):44508-17. doi: 10.1074/jbc.M112.424903. Epub 2012 Nov 14.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Expression and significance of histone H3K27 demethylases in renal cell carcinoma. Shen Y, etal., BMC Cancer. 2012 Oct 12;12:470. doi: 10.1186/1471-2407-12-470.
Additional References at PubMed
PMID:17825402   PMID:17928865   PMID:18716661   PMID:19710508   PMID:20808772   PMID:21095589   PMID:23856522   PMID:24097101   PMID:27010597   PMID:27425890   PMID:27815838   PMID:28262558  
PMID:29753027   PMID:29982434   PMID:32084453   PMID:32258110   PMID:33391480   PMID:33456568   PMID:33479437   PMID:34297635   PMID:34948220   PMID:37287407   PMID:37445785   PMID:37653221  


Genomics

Comparative Map Data
Kdm6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,619,520 - 54,641,014 (-)NCBIGRCr8
mRatBN7.21054,120,716 - 54,142,212 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,121,848 - 54,130,794 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1058,782,470 - 58,803,961 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,271,086 - 58,292,578 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,779,180 - 53,800,683 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,000,494 - 56,009,582 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,001,799 - 56,008,885 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,743,701 - 55,751,368 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,194,131 - 56,202,139 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,207,737 - 56,221,527 (-)NCBI
Celera1053,278,345 - 53,286,159 (-)NCBICelera
Cytogenetic Map10q24NCBI
KDM6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,834,217 - 7,854,796 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,834,217 - 7,854,796 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,737,535 - 7,758,114 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,683,960 - 7,698,843 (+)NCBINCBI36Build 36hg18NCBI36
Celera177,771,102 - 7,785,939 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,637,994 - 7,652,831 (+)NCBIHuRef
CHM1_1177,752,263 - 7,767,093 (+)NCBICHM1_1
T2T-CHM13v2.0177,738,322 - 7,760,122 (+)NCBIT2T-CHM13v2.0
Kdm6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,289,334 - 69,311,188 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,289,334 - 69,304,501 (-)EnsemblGRCm39 Ensembl
GRCm381169,398,508 - 69,420,367 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,398,508 - 69,413,675 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,212,010 - 69,227,177 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,214,703 - 69,229,870 (-)NCBIMGSCv36mm8
Celera1176,352,998 - 76,368,171 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.6NCBI
Kdm6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,086,204 - 9,094,404 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,085,239 - 9,106,658 (-)NCBIChiLan1.0ChiLan1.0
KDM6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,431,013 - 15,452,821 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,397,061 - 17,418,850 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,878,783 - 7,889,372 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,858,734 - 7,876,220 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,866,973 - 7,874,937 (+)Ensemblpanpan1.1panPan2
KDM6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,689,000 - 32,711,026 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,696,211 - 32,710,666 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,827,236 - 32,848,755 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,792,977 - 32,814,492 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,792,975 - 32,814,114 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,760,822 - 32,782,338 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,716,996 - 32,738,518 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,895,969 - 32,917,506 (+)NCBIUU_Cfam_GSD_1.0
Kdm6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,603,112 - 47,624,715 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,089,544 - 1,097,595 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,077,318 - 1,099,082 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDM6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,098,964 - 53,108,214 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,087,072 - 53,108,949 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,452,697 - 55,475,051 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KDM6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,221,769 - 7,241,230 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,232,426 - 7,241,040 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,166,684 - 14,188,438 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kdm6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,425,816 - 10,433,806 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,413,670 - 10,435,118 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kdm6b
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:78
Interacting mature miRNAs:87
Transcripts:ENSRNOT00000067677
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1578762Toxo1Toxoplasma gondii resistance QTL 1brain integrity trait (VT:0010579)percentage of study population displaying Toxoplasma gondii brain cysts at a point in time (CMO:0002028)105220003059378278Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
2306787Ean3Experimental allergic neuritis QTL 33.1nervous system integrity trait (VT:0010566)body weight loss (CMO:0001399)105379738566979128Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1354585Eae18aExperimental allergic encephalomyelitis QTL 18a7.50.0004nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)105379738558445852Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF532396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000067677   ⟹   ENSRNOP00000060247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1054,121,848 - 54,130,794 (-)Ensembl
Rnor_6.0 Ensembl1056,001,799 - 56,008,885 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116399   ⟹   ENSRNOP00000091469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1054,121,848 - 54,130,794 (-)Ensembl
RefSeq Acc Id: NM_001108829   ⟹   NP_001102299
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,641,014 (-)NCBI
mRatBN7.21054,120,718 - 54,142,212 (-)NCBI
Rnor_6.01056,001,626 - 56,009,582 (-)NCBI
Rnor_5.01055,743,701 - 55,751,368 (-)NCBI
RGSC_v3.41056,194,131 - 56,202,139 (-)RGD
Celera1053,278,345 - 53,286,159 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401950   ⟹   NP_001388879
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,641,014 (-)NCBI
mRatBN7.21054,120,718 - 54,142,212 (-)NCBI
RefSeq Acc Id: XM_039086469   ⟹   XP_038942397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,641,004 (-)NCBI
mRatBN7.21054,120,716 - 54,142,212 (-)NCBI
RefSeq Acc Id: XM_039086470   ⟹   XP_038942398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,636,888 (-)NCBI
mRatBN7.21054,120,716 - 54,138,075 (-)NCBI
RefSeq Acc Id: XM_039086471   ⟹   XP_038942399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,635,670 (-)NCBI
mRatBN7.21054,120,716 - 54,137,352 (-)NCBI
RefSeq Acc Id: XM_039086472   ⟹   XP_038942400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,635,603 (-)NCBI
mRatBN7.21054,120,716 - 54,136,810 (-)NCBI
RefSeq Acc Id: XM_039086473   ⟹   XP_038942401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,630,626 (-)NCBI
mRatBN7.21054,120,716 - 54,131,830 (-)NCBI
RefSeq Acc Id: XM_039086474   ⟹   XP_038942402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,630,984 (-)NCBI
mRatBN7.21054,120,716 - 54,132,184 (-)NCBI
RefSeq Acc Id: XM_039086475   ⟹   XP_038942403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,632,186 (-)NCBI
mRatBN7.21054,120,716 - 54,133,392 (-)NCBI
RefSeq Acc Id: XM_039086476   ⟹   XP_038942404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,632,186 (-)NCBI
mRatBN7.21054,120,716 - 54,133,392 (-)NCBI
RefSeq Acc Id: XM_039086477   ⟹   XP_038942405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,632,618 (-)NCBI
mRatBN7.21054,120,716 - 54,133,824 (-)NCBI
RefSeq Acc Id: XM_039086478   ⟹   XP_038942406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,641,004 (-)NCBI
mRatBN7.21054,120,716 - 54,142,212 (-)NCBI
RefSeq Acc Id: XM_039086479   ⟹   XP_038942407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,636,888 (-)NCBI
mRatBN7.21054,120,716 - 54,138,075 (-)NCBI
RefSeq Acc Id: XM_039086480   ⟹   XP_038942408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,635,665 (-)NCBI
mRatBN7.21054,120,716 - 54,136,863 (-)NCBI
RefSeq Acc Id: XM_039086481   ⟹   XP_038942409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,635,603 (-)NCBI
mRatBN7.21054,120,716 - 54,136,810 (-)NCBI
RefSeq Acc Id: XM_039086483   ⟹   XP_038942411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,641,004 (-)NCBI
mRatBN7.21054,120,716 - 54,142,212 (-)NCBI
RefSeq Acc Id: XM_063269516   ⟹   XP_063125586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,636,932 (-)NCBI
RefSeq Acc Id: XM_063269517   ⟹   XP_063125587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,630,984 (-)NCBI
RefSeq Acc Id: XM_063269518   ⟹   XP_063125588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81054,619,520 - 54,641,004 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102299 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388879 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942397 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942398 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942399 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942400 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942401 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942402 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942403 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942404 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942405 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942406 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942407 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942408 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942409 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942411 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125586 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125587 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125588 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABU49313 (Get FASTA)   NCBI Sequence Viewer  
  ABU49314 (Get FASTA)   NCBI Sequence Viewer  
  ABU49315 (Get FASTA)   NCBI Sequence Viewer  
  ABU49316 (Get FASTA)   NCBI Sequence Viewer  
  ABU49317 (Get FASTA)   NCBI Sequence Viewer  
  ABU49318 (Get FASTA)   NCBI Sequence Viewer  
  ABU49319 (Get FASTA)   NCBI Sequence Viewer  
  ABU49320 (Get FASTA)   NCBI Sequence Viewer  
  ABU49321 (Get FASTA)   NCBI Sequence Viewer  
  ABU49322 (Get FASTA)   NCBI Sequence Viewer  
  ABU49323 (Get FASTA)   NCBI Sequence Viewer  
  EDM04866 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060247.4
  ENSRNOP00000091469.1
RefSeq Acc Id: NP_001102299   ⟸   NM_001108829
- Peptide Label: isoform 1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL),   G3V9U4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000060247   ⟸   ENSRNOT00000067677
RefSeq Acc Id: XP_038942406   ⟸   XM_039086478
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942411   ⟸   XM_039086483
- Peptide Label: isoform X3
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942397   ⟸   XM_039086469
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942407   ⟸   XM_039086479
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942398   ⟸   XM_039086470
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942399   ⟸   XM_039086471
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942408   ⟸   XM_039086480
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942409   ⟸   XM_039086481
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942400   ⟸   XM_039086472
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942405   ⟸   XM_039086477
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942404   ⟸   XM_039086476
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942403   ⟸   XM_039086475
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942402   ⟸   XM_039086474
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942401   ⟸   XM_039086473
- Peptide Label: isoform X1
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091469   ⟸   ENSRNOT00000116399
RefSeq Acc Id: NP_001388879   ⟸   NM_001401950
- Peptide Label: isoform 2
- UniProtKB: A0A8I6AFH2 (UniProtKB/TrEMBL),   A6HFR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125588   ⟸   XM_063269518
- Peptide Label: isoform X2
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL),   A0A8I6AFH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125586   ⟸   XM_063269516
- Peptide Label: isoform X2
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL),   A0A8I6AFH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125587   ⟸   XM_063269517
- Peptide Label: isoform X2
- UniProtKB: A6HFR1 (UniProtKB/TrEMBL),   A0A8I6AFH2 (UniProtKB/TrEMBL)
Protein Domains
JmjC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9U4-F1-model_v2 AlphaFold G3V9U4 1-1356 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307629 AgrOrtholog
BioCyc Gene G2FUF-24550 BioCyc
Ensembl Genes ENSRNOG00000037613 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067677.4 UniProtKB/TrEMBL
  ENSRNOT00000116399.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1370 UniProtKB/TrEMBL
  1.25.40.10 UniProtKB/TrEMBL
  2.10.110.20 UniProtKB/TrEMBL
  Cupin UniProtKB/TrEMBL
InterPro Corepressor-Demethylase UniProtKB/TrEMBL
  JmjC_dom UniProtKB/TrEMBL
  KDM6_GATAL_sf UniProtKB/TrEMBL
  KDM6A_B-like_C-hel UniProtKB/TrEMBL
  KDM6A_B-like_GATAL UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
KEGG Report rno:363630 UniProtKB/TrEMBL
NCBI Gene 363630 ENTREZGENE
PANTHER LYSINE-SPECIFIC DEMETHYLASE UniProtKB/TrEMBL
  PTHR14017:SF5 UniProtKB/TrEMBL
Pfam JmjC UniProtKB/TrEMBL
  KDM6_C-hel UniProtKB/TrEMBL
  KDM6_GATAL UniProtKB/TrEMBL
PhenoGen Kdm6b PhenoGen
PROSITE JMJC UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000037613 RatGTEx
SMART JmjC UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0A8I6AFH2 ENTREZGENE, UniProtKB/TrEMBL
  A6HFR1 ENTREZGENE, UniProtKB/TrEMBL
  G3V9U4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Kdm6b  lysine demethylase 6B  Kdm6b  lysine (K)-specific demethylase 6B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-03-09 Kdm6b  lysine (K)-specific demethylase 6B  Jmjd3  jumonji domain containing 3   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Jmjd3  jumonji domain containing 3   Jmjd3_predicted  jumonji domain containing 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Jmjd3_predicted  jumonji domain containing 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED