Sesn1 (sestrin 1) - Rat Genome Database

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Gene: Sesn1 (sestrin 1) Rattus norvegicus
Analyze
Symbol: Sesn1
Name: sestrin 1
RGD ID: 1307517
Description: Predicted to enable L-leucine binding activity and oxidoreductase activity, acting on peroxide as acceptor. Predicted to be involved in several processes, including cellular response to L-leucine; cellular response to leucine starvation; and negative regulation of TORC1 signaling. Predicted to act upstream of or within regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction. Predicted to be located in cytoplasm; fibrillar center; and nucleoplasm. Predicted to be part of GATOR2 complex. Orthologous to human SESN1 (sestrin 1); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH (S)-colchicine; 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC294518; sestrin-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82046,876,918 - 46,970,010 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2046,876,895 - 46,970,010 (+)EnsemblGRCr8
mRatBN7.22045,294,876 - 45,387,698 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2045,294,871 - 45,387,697 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2047,012,668 - 47,105,158 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02046,662,855 - 46,755,338 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02047,362,434 - 47,451,891 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02046,667,116 - 46,758,306 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,667,121 - 46,758,305 (+)Ensemblrn6Rnor6.0
Rnor_5.02048,347,213 - 48,437,687 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42045,786,623 - 45,877,856 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2054,572,050 - 54,662,230 (-)NCBICelera
RGSC_v3.12045,879,708 - 45,900,868 (+)NCBI
Cytogenetic Map20q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(S)-colchicine  (EXP,ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methoxyethanol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
acrylamide  (EXP)
adefovir pivoxil  (ISO)
adenine  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
amphetamine  (EXP)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bilirubin IXalpha  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Brusatol  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (EXP)
cantharidin  (ISO)
capsaicin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
celastrol  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chlorpromazine  (EXP)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (EXP,ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
erastin  (ISO)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
fenofibrate  (EXP)
fenthion  (ISO)
fluoranthene  (ISO)
folpet  (ISO)
formaldehyde  (ISO)
gedunin  (ISO)
genistein  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
hydroxyurea  (ISO)
ibuprofen  (EXP)
ifosfamide  (ISO)
isoflavones  (ISO)
isoprenaline  (ISO)
ketamine  (EXP)
leflunomide  (ISO)
leptomycin B  (ISO)
lipopolysaccharide  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (EXP)
metformin  (EXP)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
myristicin  (ISO)
N(4)-hydroxycytidine  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nickel dichloride  (EXP)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
phenobarbital  (ISO)
picoxystrobin  (ISO)
pifithrin-alpha hydrobromide  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium bromate  (ISO)
propanal  (ISO)
Ptaquiloside  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thiram  (ISO)
titanium dioxide  (ISO)
tremolite asbestos  (ISO)
triphenyl phosphate  (EXP,ISO)
troglitazone  (EXP,ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
fibrillar center  (IEA,ISO)
GATOR2 complex  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9926927   PMID:15105503   PMID:18692468   PMID:20203043   PMID:22958918   PMID:24315959   PMID:25259925   PMID:25263562   PMID:26449471   PMID:30835510   PMID:33883304  


Genomics

Comparative Map Data
Sesn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82046,876,918 - 46,970,010 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2046,876,895 - 46,970,010 (+)EnsemblGRCr8
mRatBN7.22045,294,876 - 45,387,698 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2045,294,871 - 45,387,697 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2047,012,668 - 47,105,158 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02046,662,855 - 46,755,338 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02047,362,434 - 47,451,891 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02046,667,116 - 46,758,306 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,667,121 - 46,758,305 (+)Ensemblrn6Rnor6.0
Rnor_5.02048,347,213 - 48,437,687 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42045,786,623 - 45,877,856 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2054,572,050 - 54,662,230 (-)NCBICelera
RGSC_v3.12045,879,708 - 45,900,868 (+)NCBI
Cytogenetic Map20q12NCBI
SESN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386108,984,309 - 109,094,846 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6108,984,309 - 109,094,846 (-)Ensemblhg38GRCh38
GRCh376109,305,512 - 109,416,049 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366109,414,338 - 109,521,970 (-)NCBIBuild 36Build 36hg18NCBI36
Build 346109,414,339 - 109,521,970NCBI
Celera6110,053,551 - 110,161,184 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6106,874,235 - 106,981,304 (-)NCBIHuRef
CHM1_16109,570,466 - 109,678,815 (-)NCBICHM1_1
T2T-CHM13v2.06110,161,725 - 110,272,953 (-)NCBIT2T-CHM13v2.0
Sesn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391041,686,570 - 41,784,432 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1041,685,931 - 41,784,420 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381041,810,574 - 41,908,436 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1041,809,935 - 41,908,424 (+)Ensemblmm10GRCm38
MGSCv371041,530,380 - 41,628,242 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361041,575,864 - 41,596,839 (+)NCBIMGSCv36mm8
Celera1042,690,911 - 42,787,751 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.77NCBI
Sesn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541134,032,490 - 34,139,822 (-)Ensembl
ChiLan1.0NW_00495541134,033,986 - 34,051,171 (-)NCBIChiLan1.0ChiLan1.0
SESN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25128,995,546 - 129,101,997 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16126,886,948 - 126,992,685 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06106,789,911 - 106,896,382 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16110,839,631 - 110,945,723 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6110,839,631 - 110,946,276 (-)EnsemblpanPan2panpan1.1
SESN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11265,958,995 - 66,057,369 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1265,960,066 - 66,057,035 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1265,777,446 - 65,875,811 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01266,840,480 - 66,939,046 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1266,840,487 - 66,939,038 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11266,191,015 - 66,289,363 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01266,039,317 - 66,137,542 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01266,311,345 - 66,409,780 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sesn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946100,912,289 - 101,016,826 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365645,187,005 - 5,291,498 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365645,187,152 - 5,291,201 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SESN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,056,734 - 75,088,954 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1175,056,731 - 75,170,374 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2184,357,130 - 84,371,187 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SESN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11364,756,393 - 64,864,795 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1364,841,773 - 64,863,698 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604037,058,232 - 37,167,839 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sesn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624916230,348 - 332,985 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624916231,168 - 332,423 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Sesn1
486 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:155
Count of miRNA genes:104
Interacting mature miRNAs:130
Transcripts:ENSRNOT00000065890
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat

Markers in Region
RH130564  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22045,387,397 - 45,387,602 (+)MAPPERmRatBN7.2
Rnor_6.02046,758,006 - 46,758,210NCBIRnor6.0
Rnor_5.02048,437,387 - 48,437,591UniSTSRnor5.0
RGSC_v3.42045,877,557 - 45,877,761UniSTSRGSC3.4
Celera2054,572,145 - 54,572,349UniSTS
Cytogenetic Map20q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
18 13 79 202 91 90 59 143 59 6 447 259 16 186 103 114 31 33 33

Sequence


Ensembl Acc Id: ENSRNOT00000065890   ⟹   ENSRNOP00000060435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2045,295,214 - 45,387,697 (+)Ensembl
Rnor_6.0 Ensembl2046,667,454 - 46,758,305 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089611   ⟹   ENSRNOP00000073119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2046,876,895 - 46,970,008 (+)Ensembl
mRatBN7.2 Ensembl2045,294,871 - 45,387,694 (+)Ensembl
Rnor_6.0 Ensembl2046,667,121 - 46,758,305 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116987   ⟹   ENSRNOP00000090761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2046,877,893 - 46,970,010 (+)Ensembl
mRatBN7.2 Ensembl2045,366,374 - 45,387,694 (+)Ensembl
RefSeq Acc Id: NM_001414937   ⟹   NP_001401866
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,948,719 - 46,970,010 (+)NCBI
mRatBN7.22045,366,407 - 45,387,698 (+)NCBI
RefSeq Acc Id: XM_006256560   ⟹   XP_006256622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,876,918 - 46,970,010 (+)NCBI
mRatBN7.22045,294,876 - 45,387,698 (+)NCBI
Rnor_6.02046,667,116 - 46,758,306 (+)NCBI
Rnor_5.02048,347,213 - 48,437,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063279074   ⟹   XP_063135144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,876,922 - 46,970,010 (+)NCBI
RefSeq Acc Id: XM_063279075   ⟹   XP_063135145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82046,948,707 - 46,970,010 (+)NCBI
RefSeq Acc Id: XP_006256622   ⟸   XM_006256560
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K4P1 (UniProtKB/TrEMBL),   A6K6Z8 (UniProtKB/TrEMBL),   D3ZJU4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073119   ⟸   ENSRNOT00000089611
Ensembl Acc Id: ENSRNOP00000060435   ⟸   ENSRNOT00000065890
Ensembl Acc Id: ENSRNOP00000090761   ⟸   ENSRNOT00000116987
RefSeq Acc Id: NP_001401866   ⟸   NM_001414937
- UniProtKB: A0A8I6AEX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135144   ⟸   XM_063279074
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063135145   ⟸   XM_063279075
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K4P1-F1-model_v2 AlphaFold A0A0G2K4P1 1-551 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701671
Promoter ID:EPDNEW_R12192
Type:single initiation site
Name:Sesn1_1
Description:sestrin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02046,667,101 - 46,667,161EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307517 AgrOrtholog
BioCyc Gene G2FUF-3388 BioCyc
Ensembl Genes ENSRNOG00000000302 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065890.2 UniProtKB/TrEMBL
  ENSRNOT00000089611 ENTREZGENE
  ENSRNOT00000089611.2 UniProtKB/TrEMBL
  ENSRNOT00000116987.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1290.10 UniProtKB/TrEMBL
InterPro AhpD-like UniProtKB/TrEMBL
  PA26 UniProtKB/TrEMBL
NCBI Gene 294518 ENTREZGENE
PANTHER PTHR12474 UniProtKB/TrEMBL
  SESTRIN-1 UniProtKB/TrEMBL
Pfam PA26 UniProtKB/TrEMBL
PhenoGen Sesn1 PhenoGen
RatGTEx ENSRNOG00000000302 RatGTEx
Superfamily-SCOP SSF69118 UniProtKB/TrEMBL
UniProt A0A0G2K4P1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AEX8 ENTREZGENE, UniProtKB/TrEMBL
  A6K6Z8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJU4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Sesn1  sestrin 1   Sesn1_predicted  sestrin 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Sesn1_predicted  sestrin 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED