Rpp38 (ribonuclease P/MRP subunit p38) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rpp38 (ribonuclease P/MRP subunit p38) Rattus norvegicus
Analyze
Symbol: Rpp38
Name: ribonuclease P/MRP subunit p38
RGD ID: 1307474
Description: Predicted to enable ribonuclease P RNA binding activity. Predicted to contribute to ribonuclease P activity. Predicted to be involved in tRNA 5'-leader removal. Predicted to be located in nucleolus. Predicted to be part of multimeric ribonuclease P complex. Predicted to be active in fibrillar center. Orthologous to human RPP38 (ribonuclease P/MRP subunit p38); PARTICIPATES IN tRNA maturation pathway; ribosome biogenesis pathway; RNA transport pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291317; MGC124666; ribonuclease P protein subunit p38; ribonuclease P/MRP 38 subunit; ribonuclease P/MRP 38 subunit (human); ribonuclease P/MRP 38kDa subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81779,823,237 - 79,826,908 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1779,822,980 - 79,869,245 (+)EnsemblGRCr8
mRatBN7.21774,914,066 - 74,917,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1774,908,932 - 74,927,431 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1778,380,911 - 78,384,455 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01782,216,290 - 82,219,834 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01776,264,235 - 76,267,779 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01778,915,450 - 78,919,144 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1778,915,604 - 78,919,143 (+)Ensemblrn6Rnor6.0
Rnor_5.01780,556,274 - 80,560,521 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41786,033,450 - 86,036,990 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1774,293,601 - 74,297,141 (+)NCBICelera
RGSC_v3.11786,046,905 - 86,047,736 (+)NCBI
Cytogenetic Map17q12.3NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Unexpected diversity of RNase P, an ancient tRNA processing enzyme: challenges and prospects. Lai LB, etal., FEBS Lett. 2010 Jan 21;584(2):287-96. doi: 10.1016/j.febslet.2009.11.048. Epub .
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:10444065   PMID:12477932   PMID:30454648  


Genomics

Comparative Map Data
Rpp38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81779,823,237 - 79,826,908 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1779,822,980 - 79,869,245 (+)EnsemblGRCr8
mRatBN7.21774,914,066 - 74,917,742 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1774,908,932 - 74,927,431 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1778,380,911 - 78,384,455 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01782,216,290 - 82,219,834 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01776,264,235 - 76,267,779 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01778,915,450 - 78,919,144 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1778,915,604 - 78,919,143 (+)Ensemblrn6Rnor6.0
Rnor_5.01780,556,274 - 80,560,521 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41786,033,450 - 86,036,990 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1774,293,601 - 74,297,141 (+)NCBICelera
RGSC_v3.11786,046,905 - 86,047,736 (+)NCBI
Cytogenetic Map17q12.3NCBI
RPP38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381015,097,355 - 15,104,257 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1015,097,180 - 15,139,818 (+)Ensemblhg38GRCh38
GRCh371015,139,354 - 15,146,256 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361015,179,188 - 15,186,262 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1015,067,814 - 15,074,888 (+)NCBICelera
Cytogenetic Map10p13NCBI
HuRef1015,049,413 - 15,056,395 (+)NCBIHuRef
CHM1_11015,139,292 - 15,146,368 (+)NCBICHM1_1
T2T-CHM13v2.01015,111,088 - 15,118,231 (+)NCBIT2T-CHM13v2.0
Rpp38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,328,305 - 3,334,023 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,329,986 - 3,333,680 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3823,326,548 - 3,332,986 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,328,949 - 3,332,643 (-)Ensemblmm10GRCm38
MGSCv3723,246,221 - 3,249,900 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3623,246,221 - 3,249,863 (-)NCBIMGSCv36mm8
Celera23,280,688 - 3,284,367 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map21.87NCBI
Rpp38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542919,358,765 - 19,360,973 (-)Ensembl
ChiLan1.0NW_00495542919,358,765 - 19,360,973 (-)NCBIChiLan1.0ChiLan1.0
RPP38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2827,937,238 - 27,944,415 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11027,942,564 - 27,949,741 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01015,413,026 - 15,420,170 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11015,694,410 - 15,701,569 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1015,700,027 - 15,703,046 (+)EnsemblpanPan2panpan1.1
RPP38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1221,612,114 - 21,617,371 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl221,612,200 - 21,614,485 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha218,725,394 - 18,730,634 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0221,913,363 - 21,918,600 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl221,913,380 - 21,918,563 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1219,113,947 - 19,119,188 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0219,948,839 - 19,954,079 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0220,575,433 - 20,580,672 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpp38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934416,149,771 - 16,153,543 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365745,651,758 - 5,657,119 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365745,648,696 - 5,653,030 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPP38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1046,717,197 - 46,725,920 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11046,720,135 - 46,725,962 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21051,454,233 - 51,459,147 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPP38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1915,073,265 - 15,080,322 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl915,079,383 - 15,080,231 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605120,617,027 - 20,624,053 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpp38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624805453,703 - 460,430 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624805456,432 - 460,906 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpp38
92 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:44
Count of miRNA genes:42
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000057855
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174238816487388164Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)177061350286062352Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175819406487388164Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)173803135483031354Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)175482950393515804Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)173803135483031354Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)173803135483031354Rat
61466Niddm12Non-insulin dependent diabetes mellitus QTL 123.20.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)176515487293515804Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173803135483031354Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)174238816487388164Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)174605012691050126Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175560459793006569Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)174265489587654895Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)173768787782687877Rat
1300131Bp193Blood pressure QTL 1933.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)176855004093515804Rat
7488963Bp369Blood pressure QTL 3690.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)176369714782818564Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173604553781045537Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)176456982086954580Rat

Markers in Region
D17Got93  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21774,913,451 - 74,913,656 (+)MAPPERmRatBN7.2
Rnor_6.01778,914,854 - 78,915,058NCBIRnor6.0
Rnor_5.01780,555,659 - 80,555,863UniSTSRnor5.0
RGSC_v3.41786,032,699 - 86,032,904RGDRGSC3.4
RGSC_v3.41786,032,700 - 86,032,904UniSTSRGSC3.4
Celera1774,292,851 - 74,293,055UniSTS
RGSC_v3.11786,043,533 - 86,043,737RGD
RH 3.4 Map17765.5UniSTS
RH 3.4 Map17765.5RGD
RH 2.0 Map17666.8RGD
Cytogenetic Map17q12.3UniSTS
RH127990  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21774,917,529 - 74,917,721 (+)MAPPERmRatBN7.2
Rnor_6.01778,918,932 - 78,919,123NCBIRnor6.0
Rnor_5.01780,559,737 - 80,559,928UniSTSRnor5.0
RGSC_v3.41786,036,778 - 86,036,969UniSTSRGSC3.4
Celera1774,296,929 - 74,297,120UniSTS
RH 3.4 Map17761.4UniSTS
Cytogenetic Map17q12.3UniSTS
RH137116  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81779,827,048 - 79,827,230 (+)Marker Load Pipeline
mRatBN7.21774,917,882 - 74,918,064 (+)MAPPERmRatBN7.2
Rnor_6.01778,919,285 - 78,919,466NCBIRnor6.0
Rnor_5.01780,560,090 - 80,560,271UniSTSRnor5.0
RGSC_v3.41786,037,131 - 86,037,312UniSTSRGSC3.4
Celera1774,297,282 - 74,297,463UniSTS
RH 3.4 Map17761.3UniSTS
Cytogenetic Map17q12.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 85 59 6 349 185 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000057855   ⟹   ENSRNOP00000054664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1778,915,604 - 78,919,143 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094577   ⟹   ENSRNOP00000080403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1774,908,932 - 74,920,677 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097249   ⟹   ENSRNOP00000076703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1779,823,143 - 79,831,501 (+)Ensembl
mRatBN7.2 Ensembl1774,908,932 - 74,920,677 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104375   ⟹   ENSRNOP00000088393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1779,823,143 - 79,830,813 (+)Ensembl
mRatBN7.2 Ensembl1774,912,734 - 74,920,677 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113691   ⟹   ENSRNOP00000089727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1779,823,130 - 79,827,822 (+)Ensembl
mRatBN7.2 Ensembl1774,908,932 - 74,927,431 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000133039   ⟹   ENSRNOP00000112622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1779,823,261 - 79,869,245 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000133712   ⟹   ENSRNOP00000111340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1779,823,368 - 79,826,907 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000151742   ⟹   ENSRNOP00000104525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1779,822,980 - 79,850,642 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000152366   ⟹   ENSRNOP00000102450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1779,823,121 - 79,862,627 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000162891   ⟹   ENSRNOP00000112286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1779,823,248 - 79,852,244 (+)Ensembl
RefSeq Acc Id: NM_001033063   ⟹   NP_001028235
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,823,368 - 79,826,908 (+)NCBI
mRatBN7.21774,914,202 - 74,917,742 (+)NCBI
Rnor_6.01778,915,604 - 78,919,144 (+)NCBI
Rnor_5.01780,556,274 - 80,560,521 (+)NCBI
RGSC_v3.41786,033,450 - 86,036,990 (+)RGD
Celera1774,293,601 - 74,297,141 (+)RGD
Sequence:
RefSeq Acc Id: XM_006254268   ⟹   XP_006254330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81779,823,237 - 79,826,898 (+)NCBI
mRatBN7.21774,914,066 - 74,917,742 (+)NCBI
Rnor_6.01778,915,450 - 78,919,144 (+)NCBI
Rnor_5.01780,556,274 - 80,560,521 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001028235 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254330 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI00624 (Get FASTA)   NCBI Sequence Viewer  
  EDL78701 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000076703.1
  ENSRNOP00000080403.1
  ENSRNOP00000088393.1
  ENSRNOP00000089727.1
  ENSRNOP00000111340
RefSeq Acc Id: NP_001028235   ⟸   NM_001033063
- UniProtKB: Q497C2 (UniProtKB/TrEMBL),   A6JM24 (UniProtKB/TrEMBL),   A0A8I5YBF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254330   ⟸   XM_006254268
- Peptide Label: isoform X1
- UniProtKB: Q497C2 (UniProtKB/TrEMBL),   A6JM24 (UniProtKB/TrEMBL),   A0A8I5YBF8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000054664   ⟸   ENSRNOT00000057855
Ensembl Acc Id: ENSRNOP00000089727   ⟸   ENSRNOT00000113691
Ensembl Acc Id: ENSRNOP00000080403   ⟸   ENSRNOT00000094577
Ensembl Acc Id: ENSRNOP00000076703   ⟸   ENSRNOT00000097249
Ensembl Acc Id: ENSRNOP00000088393   ⟸   ENSRNOT00000104375
Ensembl Acc Id: ENSRNOP00000102450   ⟸   ENSRNOT00000152366
Ensembl Acc Id: ENSRNOP00000112286   ⟸   ENSRNOT00000162891
Ensembl Acc Id: ENSRNOP00000104525   ⟸   ENSRNOT00000151742
Ensembl Acc Id: ENSRNOP00000112622   ⟸   ENSRNOT00000133039
Ensembl Acc Id: ENSRNOP00000111340   ⟸   ENSRNOT00000133712
Protein Domains
Ribosomal protein eL8/eL30/eS12/Gadd45

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q497C2-F1-model_v2 AlphaFold Q497C2 1-272 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700587
Promoter ID:EPDNEW_R11111
Type:initiation region
Name:Rpp38_1
Description:ribonuclease P/MRP subunit p38
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01778,915,592 - 78,915,652EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307474 AgrOrtholog
BioCyc Gene G2FUF-8640 BioCyc
Ensembl Genes ENSRNOG00000038025 Ensembl
  ENSRNOG00000063181 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000094577.1 UniProtKB/TrEMBL
  ENSRNOT00000097249.1 UniProtKB/TrEMBL
  ENSRNOT00000104375.1 UniProtKB/TrEMBL
  ENSRNOT00000113691.1 UniProtKB/TrEMBL
  ENSRNOT00000133712 ENTREZGENE
Gene3D-CATH 3.30.1330.30 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7929545 IMAGE-MGC_LOAD
InterPro L30e-like UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/TrEMBL
  Rpp38 UniProtKB/TrEMBL
KEGG Report rno:291317 UniProtKB/TrEMBL
MGC_CLONE MGC:124666 IMAGE-MGC_LOAD
NCBI Gene 291317 ENTREZGENE
PANTHER PTHR46948 UniProtKB/TrEMBL
  RIBONUCLEASE P PROTEIN SUBUNIT P38 UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/TrEMBL
PhenoGen Rpp38 PhenoGen
RatGTEx ENSRNOG00000038025 RatGTEx
  ENSRNOG00000063181 RatGTEx
Superfamily-SCOP SSF55315 UniProtKB/TrEMBL
UniProt A0A8I5YBF8 ENTREZGENE, UniProtKB/TrEMBL
  A6JM24 ENTREZGENE
  Q497C2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6JM24 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-27 Rpp38  ribonuclease P/MRP subunit p38  Rpp38  ribonuclease P/MRP 38 subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-02-04 Rpp38  ribonuclease P/MRP 38 subunit  Rpp38  ribonuclease P/MRP 38 subunit (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Rpp38  ribonuclease P/MRP 38 subunit (human)    ribonuclease P/MRP 38kDa subunit  Name updated 1299863 APPROVED
2005-12-06 Rpp38  ribonuclease P/MRP 38kDa subunit  Rpp38_predicted  ribonuclease P/MRP 38kDa subunit (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rpp38_predicted  ribonuclease P/MRP 38kDa subunit (predicted)      Symbol and Name status set to approved 70820 APPROVED