Bicc1 (BicC family RNA binding protein 1) - Rat Genome Database

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Gene: Bicc1 (BicC family RNA binding protein 1) Rattus norvegicus
Analyze
Symbol: Bicc1
Name: BicC family RNA binding protein 1
RGD ID: 1307459
Description: Predicted to enable RNA binding activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within determination of left/right symmetry; heart development; and kidney development. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in diffuse cystic renal dysplasia. Orthologous to human BICC1 (BicC family RNA binding protein 1); INTERACTS WITH 1,2-dimethylhydrazine; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bicaudal C homolog 1; bicaudal C homolog 1 (Drosophila); LOC361832
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82017,448,745 - 17,685,887 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2017,448,765 - 17,685,885 (+)EnsemblGRCr8
mRatBN7.22017,449,639 - 17,686,775 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2017,449,560 - 17,686,776 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2018,257,264 - 18,411,484 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02017,611,981 - 17,766,205 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02018,084,941 - 18,239,159 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02018,780,605 - 18,940,429 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2018,780,605 - 18,940,408 (+)Ensemblrn6Rnor6.0
Rnor_5.02020,910,387 - 21,094,056 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42018,288,079 - 18,477,016 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2018,929,366 - 19,081,174 (+)NCBICelera
RGSC_v3.12018,362,469 - 18,490,478 (+)NCBI
Cytogenetic Map20p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-Nitrobenzanthrone  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (EXP,ISO)
aflatoxin M1  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
glycidyl methacrylate  (ISO)
inulin  (ISO)
itraconazole  (ISO)
ketoconazole  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
melphalan  (ISO)
methoxychlor  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
orphenadrine  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
tributylstannane  (EXP)
triclosan  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21922595   PMID:22658674   PMID:25178406   PMID:25807483  


Genomics

Comparative Map Data
Bicc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82017,448,745 - 17,685,887 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2017,448,765 - 17,685,885 (+)EnsemblGRCr8
mRatBN7.22017,449,639 - 17,686,775 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2017,449,560 - 17,686,776 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2018,257,264 - 18,411,484 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02017,611,981 - 17,766,205 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02018,084,941 - 18,239,159 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02018,780,605 - 18,940,429 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2018,780,605 - 18,940,408 (+)Ensemblrn6Rnor6.0
Rnor_5.02020,910,387 - 21,094,056 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42018,288,079 - 18,477,016 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2018,929,366 - 19,081,174 (+)NCBICelera
RGSC_v3.12018,362,469 - 18,490,478 (+)NCBI
Cytogenetic Map20p11NCBI
BICC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381058,512,220 - 58,831,435 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1058,512,872 - 58,831,435 (+)Ensemblhg38GRCh38
GRCh371060,272,632 - 60,591,195 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361059,942,910 - 60,258,851 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1053,537,852 - 53,853,737 (+)NCBICelera
Cytogenetic Map10q21.1NCBI
HuRef1054,263,360 - 54,579,402 (+)NCBIHuRef
CHM1_11060,554,682 - 60,870,585 (+)NCBICHM1_1
T2T-CHM13v2.01059,367,047 - 59,685,442 (+)NCBIT2T-CHM13v2.0
Bicc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391070,758,660 - 70,995,581 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1070,758,662 - 70,995,530 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381070,922,830 - 71,159,690 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1070,922,832 - 71,159,700 (-)Ensemblmm10GRCm38
MGSCv371070,387,834 - 70,622,382 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361070,320,386 - 70,554,934 (-)NCBIMGSCv36mm8
Celera1072,006,733 - 72,235,068 (-)NCBICelera
Cytogenetic Map10B5.3NCBI
cM Map1036.75NCBI
Bicc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542512,333,747 - 12,519,872 (+)Ensembl
ChiLan1.0NW_00495542512,237,611 - 12,522,321 (+)NCBIChiLan1.0ChiLan1.0
BICC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2870,718,794 - 71,044,225 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11070,727,719 - 71,049,535 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01055,044,812 - 55,366,668 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11057,539,710 - 57,568,882 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1057,264,973 - 57,583,404 (+)EnsemblpanPan2panpan1.1
BICC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1410,735,307 - 11,006,650 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl410,735,306 - 11,066,274 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha410,927,931 - 11,198,411 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0410,992,359 - 11,262,878 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl410,991,801 - 11,262,608 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1410,975,790 - 11,246,137 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0411,096,467 - 11,366,931 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0411,405,347 - 11,676,261 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bicc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721370,124,835 - 70,398,621 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366144,211,083 - 4,484,868 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366144,211,090 - 4,484,862 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1461,793,332 - 62,127,094 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11461,793,362 - 62,128,424 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21466,669,316 - 66,911,540 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BICC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1972,469,498 - 72,789,106 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl972,469,323 - 72,789,167 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604833,363,225 - 33,688,871 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bicc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247914,732,581 - 5,057,912 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Bicc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11815,700,653 - 15,943,169 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Bicc1
2166 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:352
Count of miRNA genes:200
Interacting mature miRNAs:231
Transcripts:ENSRNOT00000000754
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
D20Rat5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22017,617,832 - 17,617,956 (+)MAPPERmRatBN7.2
Rnor_6.02018,872,150 - 18,872,273NCBIRnor6.0
Rnor_5.02021,025,611 - 21,025,734UniSTSRnor5.0
RGSC_v3.42018,411,845 - 18,411,969RGDRGSC3.4
RGSC_v3.42018,411,846 - 18,411,969UniSTSRGSC3.4
Celera2019,015,307 - 19,015,430UniSTS
RGSC_v3.12018,425,634 - 18,426,179RGD
RH 2.0 Map20258.6RGD
SHRSP x BN Map2016.6599RGD
FHH x ACI Map209.1099RGD
Cytogenetic Map20p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 158 91 90 59 74 59 6 338 174 11 137 81 92 31 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000000754   ⟹   ENSRNOP00000000754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2017,448,765 - 17,681,027 (+)Ensembl
mRatBN7.2 Ensembl2017,449,560 - 17,684,864 (+)Ensembl
Rnor_6.0 Ensembl2018,780,605 - 18,938,511 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080846   ⟹   ENSRNOP00000071622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2017,448,765 - 17,685,885 (+)Ensembl
mRatBN7.2 Ensembl2017,449,560 - 17,686,776 (+)Ensembl
Rnor_6.0 Ensembl2018,833,481 - 18,940,408 (+)Ensembl
RefSeq Acc Id: NM_001415073   ⟹   NP_001402002
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82017,448,765 - 17,685,885 (+)NCBI
mRatBN7.22017,449,639 - 17,686,773 (+)NCBI
RefSeq Acc Id: XM_017601688   ⟹   XP_017457177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82017,593,920 - 17,685,887 (+)NCBI
mRatBN7.22017,594,805 - 17,686,775 (+)NCBI
Rnor_6.02018,843,635 - 18,940,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098830   ⟹   XP_038954758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82017,448,745 - 17,685,887 (+)NCBI
mRatBN7.22017,449,644 - 17,686,775 (+)NCBI
RefSeq Acc Id: XM_039098831   ⟹   XP_038954759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82017,448,745 - 17,683,493 (+)NCBI
mRatBN7.22017,449,644 - 17,684,383 (+)NCBI
RefSeq Acc Id: XP_017457177   ⟸   XM_017601688
- Peptide Label: isoform X3
- UniProtKB: A6JKP7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071622   ⟸   ENSRNOT00000080846
Ensembl Acc Id: ENSRNOP00000000754   ⟸   ENSRNOT00000000754
RefSeq Acc Id: XP_038954758   ⟸   XM_039098830
- Peptide Label: isoform X1
- UniProtKB: A6JKP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954759   ⟸   XM_039098831
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K0Y0 (UniProtKB/TrEMBL),   A6JKP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001402002   ⟸   NM_001415073
- UniProtKB: D3ZDJ9 (UniProtKB/TrEMBL),   A6JKP7 (UniProtKB/TrEMBL)
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZDJ9-F1-model_v2 AlphaFold D3ZDJ9 1-898 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307459 AgrOrtholog
BioCyc Gene G2FUF-4041 BioCyc
Ensembl Genes ENSRNOG00000000614 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000754 ENTREZGENE
  ENSRNOT00000000754.8 UniProtKB/TrEMBL
  ENSRNOT00000080846 ENTREZGENE
  ENSRNOT00000080846.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  3.30.1370.10 UniProtKB/TrEMBL
  3.30.310.270 UniProtKB/TrEMBL
InterPro BICC1_KH UniProtKB/TrEMBL
  BICC1_KH-I_rpt1 UniProtKB/TrEMBL
  BICC1_KH-I_rpt2 UniProtKB/TrEMBL
  BICC1_KH-I_rpt3 UniProtKB/TrEMBL
  BICC1_SAM_dom UniProtKB/TrEMBL
  IPR004087 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
  KH_type_1 UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM_type UniProtKB/TrEMBL
NCBI Gene 361832 ENTREZGENE
PANTHER PROTEIN BICAUDAL C HOMOLOG 1 UniProtKB/TrEMBL
  SCP160 UniProtKB/TrEMBL
Pfam BICC1_KH UniProtKB/TrEMBL
  KH_1 UniProtKB/TrEMBL
  KH_BICC1_1st UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
PhenoGen Bicc1 PhenoGen
PROSITE KH_TYPE_1 UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000614 RatGTEx
SMART SAM UniProtKB/TrEMBL
  SM00322 UniProtKB/TrEMBL
Superfamily-SCOP SAM_homology UniProtKB/TrEMBL
  SSF54791 UniProtKB/TrEMBL
UniProt A0A0G2K0Y0 ENTREZGENE, UniProtKB/TrEMBL
  A6JKP7 ENTREZGENE, UniProtKB/TrEMBL
  A6JKP8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZDJ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-02-13 Bicc1  BicC family RNA binding protein 1  Bicc1  bicaudal C homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Bicc1  bicaudal C homolog 1 (Drosophila)   Bicc1_predicted  bicaudal C homolog 1 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Bicc1_predicted  bicaudal C homolog 1 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED